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UBERON:0007690

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Name:early pharyngeal endoderm
Namespace:FANTOM
Definition:"." [1]
Xrefs:
links:

EFO:0003626
EHDAA2:0001457
EHDAA:962
TAO:0001104

ZFA:0001104
Synonyms: "early pharyngeal arch endoderm" EXACT [EHDAA2:0001457]
"pharyngeal arch endoderm" RELATED []
"pharyngeal endoderm" RELATED [ZFA:0001104]
"pharyngeal region endoderm" RELATED [EHDAA2:0001456]
Comments:relation conflict: ZFA vs EHDAA2. Note EHDAA2 term renamed to 'early PA endoderm'

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0003258(endoderm of foregut),UBERON:0004814(upper respiratory tract epithelium),UBERON:0005291(embryonic tissue)
develops_from:UBERON:0000925(endoderm)
part_of:UBERON:0008814(pharyngeal arch system),UBERON:0009722(entire pharyngeal arch endoderm)



Children

develops from:UBERON:0003351 (pharyngeal epithelium),UBERON:0004117 (pharyngeal pouch),UBERON:0005562 (thymus primordium)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007690 (early pharyngeal endoderm), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.76e-68FFCP PHASE2:Mm9::chr6:41483113..41483131,+#_28afe21f1226cb216e14232c453bf846p4@uc009bpa.1
1.76e-68FFCP PHASE1:Mm9::chr6:41483113..41483131,+#_28afe21f1226cb216e14232c453bf846p4@uc009bpa.1
2.4e-67FFCP PHASE2:Mm9::chr6:41483037..41483046,+#_0e6bc5816219dd42cd5171b8894ed8b3p8@uc009bpa.1
2.4e-67FFCP PHASE1:Mm9::chr6:41483037..41483046,+#_0e6bc5816219dd42cd5171b8894ed8b3p8@uc009bpa.1
1.12e-65FFCP PHASE2:Mm9::chr6:41485075..41485096,+#_6c9f22eabb8f53699d9f7d56378ff157p1@ENSMUST00000103288, p1@uc009bpl.1
1.12e-65FFCP PHASE1:Mm9::chr6:41485075..41485096,+#_6c9f22eabb8f53699d9f7d56378ff157p1@ENSMUST00000103288, p1@uc009bpl.1
2.12e-64FFCP PHASE2:Mm9::chr6:41491752..41491776,-#_1c5287b22385082565c80194d75776acp@chr6:41491752..41491776, -
2.12e-64FFCP PHASE1:Mm9::chr6:41491752..41491776,-#_1c5287b22385082565c80194d75776acp@chr6:41491752..41491776, -
2.12e-64FFCP PHASE2:Mm9::chr12:108361918..108361930,-#_1c5287b22385082565c80194d75776acp@chr12:108361918..108361930, -
2.12e-64FFCP PHASE1:Mm9::chr12:108361918..108361930,-#_1c5287b22385082565c80194d75776acp@chr12:108361918..108361930, -
3.88e-63FFCP PHASE2:Mm9::chr6:41483173..41483188,+#_71850c4c118a63aa6a9e7c33ec8acfa2p2@ENSMUST00000103283
3.88e-63FFCP PHASE1:Mm9::chr6:41483173..41483188,+#_71850c4c118a63aa6a9e7c33ec8acfa2p2@ENSMUST00000103283
4.88e-63FFCP PHASE2:Mm9::chr6:41484803..41484826,+#_ad648a589a0b90a57c9e8521c6975d6cp1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1
4.88e-63FFCP PHASE1:Mm9::chr6:41484803..41484826,+#_ad648a589a0b90a57c9e8521c6975d6cp1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1
7.68e-62FFCP PHASE1:Mm9::chr9:44807434..44807445,-#_c02afa086c813293e04b3cc61ed3759cp@chr9:44807434..44807445, -
7.68e-62FFCP PHASE2:Mm9::chr9:44807434..44807445,-#_c02afa086c813293e04b3cc61ed3759cp@chr9:44807434..44807445, -
1.0e-61FFCP PHASE2:Mm9::chr6:41494001..41494028,+#_a2cfbcf0478b13963436f2891cf2cb5ep@chr6:41494001..41494028, +
1.0e-61FFCP PHASE1:Mm9::chr6:41494001..41494028,+#_a2cfbcf0478b13963436f2891cf2cb5ep@chr6:41494001..41494028, +
2.4e-61FFCP PHASE2:Mm9::chr9:44809185..44809215,-#_302486934dfba12730ca70a6f40e1766p@chr9:44809185..44809215, -
2.4e-61FFCP PHASE1:Mm9::chr9:44809185..44809215,-#_302486934dfba12730ca70a6f40e1766p@chr9:44809185..44809215, -
2.59e-61FFCP PHASE2:Mm9::chr2:11093788..11093799,+#_634db4777e5fdb340d4ebeb4d49f7e53p11@Prkcq
2.59e-61FFCP PHASE1:Mm9::chr2:11093788..11093799,+#_634db4777e5fdb340d4ebeb4d49f7e53p11@Prkcq
8.25e-61FFCP PHASE2:Mm9::chr14:54791784..54791787,+#_ed964fdedb8ea2730cc035d165c5aa66p@chr14:54791784..54791787, +
8.25e-61FFCP PHASE1:Mm9::chr14:54791784..54791787,+#_ed964fdedb8ea2730cc035d165c5aa66p@chr14:54791784..54791787, +
1.47e-60FFCP PHASE2:Mm9::chr6:40997465..40997489,+#_3b2843e677e153e277ab43a3605cafcdp1@ENSMUST00000103263
1.47e-60FFCP PHASE1:Mm9::chr6:40997465..40997489,+#_3b2843e677e153e277ab43a3605cafcdp1@ENSMUST00000103263
2.74e-60FFCP PHASE1:Mm9::chr10:28388454..28388458,+#_4b3b04d42fd60e37195194f6e882ec97p5@Themis
2.74e-60FFCP PHASE2:Mm9::chr10:28388454..28388458,+#_4b3b04d42fd60e37195194f6e882ec97p5@Themis
3.21e-60FFCP PHASE2:Mm9::chr6:41482920..41482933,+#_6b6439ef8b2d1843ffbe62f6437b387cp5@uc009bpa.1
3.21e-60FFCP PHASE1:Mm9::chr6:41482920..41482933,+#_6b6439ef8b2d1843ffbe62f6437b387cp5@uc009bpa.1
3.77e-60FFCP PHASE2:Mm9::chr9:44793518..44793537,+#_09edb14107227295c4714293df53ebe2p@chr9:44793518..44793537, +
3.77e-60FFCP PHASE1:Mm9::chr9:44793518..44793537,+#_09edb14107227295c4714293df53ebe2p@chr9:44793518..44793537, +
4.87e-60FFCP PHASE2:Mm9::chr6:41071548..41071565,+#_cd2225ff8f4b86beb98e802ea2280c68p@chr6:41071548..41071565, +
4.87e-60FFCP PHASE1:Mm9::chr6:41071548..41071565,+#_cd2225ff8f4b86beb98e802ea2280c68+, p@chr6:41071548..41071565
9.63e-60FFCP PHASE2:Mm9::chr6:40997323..40997349,+#_82ede143d7c4ef1eaff4031744a7abf9p2@uc009bnp.1, p2@uc012eki.1
9.63e-60FFCP PHASE1:Mm9::chr6:40997323..40997349,+#_82ede143d7c4ef1eaff4031744a7abf9p2@uc009bnp.1, p2@uc012eki.1
5.49e-59FFCP PHASE1:Mm9::chr11:52095797..52095809,-#_d57705088d3b3ce58036cccab489e689p5@Tcf7
5.49e-59FFCP PHASE2:Mm9::chr11:52095797..52095809,-#_d57705088d3b3ce58036cccab489e689p5@Tcf7
2.14e-58FFCP PHASE2:Mm9::chr14:61328148..61328173,+#_6048b45d81a89702f2f892cba95027eep@chr14:61328148..61328173, +
2.14e-58FFCP PHASE1:Mm9::chr14:61328148..61328173,+#_6048b45d81a89702f2f892cba95027eep@chr14:61328148..61328173, +
3.25e-58FFCP PHASE2:Mm9::chr6:41483016..41483036,+#_1daf6932736e86769a08f1a84b2333b9p2@uc009bpa.1
3.25e-58FFCP PHASE1:Mm9::chr6:41483016..41483036,+#_1daf6932736e86769a08f1a84b2333b9p2@uc009bpa.1
3.74e-58FFCP PHASE2:Mm9::chrX:39855684..39855699,+#_58a9156c9e13febdb4dbab6cf0175ef9p2@Sh2d1a
3.74e-58FFCP PHASE1:Mm9::chrX:39855684..39855699,+#_58a9156c9e13febdb4dbab6cf0175ef9p2@Sh2d1a
7.15e-58FFCP PHASE2:Mm9::chr6:41128981..41128995,+#_05b88455d351f24e46e51f5b223d2b07p1@uc012ekr.1
7.15e-58FFCP PHASE1:Mm9::chr6:41128981..41128995,+#_05b88455d351f24e46e51f5b223d2b07p1@uc012ekr.1
9.05e-58FFCP PHASE2:Mm9::chr6:40841675..40841691,+#_4ca5a66558141c869bb01d2ae72986cdp2@1810009J06Rik
9.05e-58FFCP PHASE1:Mm9::chr6:40841675..40841691,+#_4ca5a66558141c869bb01d2ae72986cdp2@1810009J06Rik
1.34e-57FFCP PHASE2:Mm9::chr6:41066036..41066054,+#_d3296e54e9cd8580f53624b94c98ce1bp1@uc012ekk.1
1.34e-57FFCP PHASE1:Mm9::chr6:41066036..41066054,+#_d3296e54e9cd8580f53624b94c98ce1bp1@uc012ekk.1
1.56e-57FFCP PHASE2:Mm9::chr6:41009432..41009454,+#_f1e25a05fa761ffb03ac90924f6db471p1@ENSMUST00000103265
1.56e-57FFCP PHASE2:Mm9::chr6:41491943..41491953,+#_f1e25a05fa761ffb03ac90924f6db471p3@uc009bpo.1, p3@uc009bpp.1
1.56e-57FFCP PHASE1:Mm9::chr6:41009432..41009454,+#_f1e25a05fa761ffb03ac90924f6db471p1@ENSMUST00000103265
1.56e-57FFCP PHASE1:Mm9::chr6:41491943..41491953,+#_f1e25a05fa761ffb03ac90924f6db471p3@uc009bpo.1, p3@uc009bpp.1
3.61e-57FFCP PHASE1:Mm9::chr7:133512043..133512060,-#_a192a04fae89bf0d59c7c780246e1445p@chr7:133512043..133512060, -
3.61e-57FFCP PHASE2:Mm9::chr7:133512043..133512060,-#_a192a04fae89bf0d59c7c780246e1445p@chr7:133512043..133512060, -
4.31e-57FFCP PHASE2:Mm9::chr6:41128837..41128859,+#_c4b20c91aab87704c11b43d3a89ab2b4p2@Gm5409
4.31e-57FFCP PHASE1:Mm9::chr6:41128837..41128859,+#_c4b20c91aab87704c11b43d3a89ab2b4p2@Gm5409
6.91e-57FFCP PHASE2:Mm9::chr16:48772215..48772256,-#_869dbaf3918f3745cce54753cd2a65c7p4@Trat1
6.91e-57FFCP PHASE1:Mm9::chr16:48772215..48772256,-#_869dbaf3918f3745cce54753cd2a65c7p4@Trat1
6.93e-57FFCP PHASE1:Mm9::chr16:48772258..48772270,-#_d4d3afb061e4cd3858d8e743898f7cb4p5@Trat1
6.93e-57FFCP PHASE2:Mm9::chr16:48772258..48772270,-#_d4d3afb061e4cd3858d8e743898f7cb4p5@Trat1
7.43e-57FFCP PHASE2:Mm9::chr6:41489240..41489252,+#_a78aa1cc69a7277a0fce544744cd4688p@chr6:41489240..41489252, +
7.43e-57FFCP PHASE1:Mm9::chr6:41489240..41489252,+#_a78aa1cc69a7277a0fce544744cd4688p@chr6:41489240..41489252, +
1.27e-56FFCP PHASE2:Mm9::chr6:41484314..41484337,+#_0cda2a5a17abf22b8b1b94059e6b8750p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1
1.27e-56FFCP PHASE1:Mm9::chr6:41484314..41484337,+#_0cda2a5a17abf22b8b1b94059e6b8750p1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1
1.56e-56FFCP PHASE2:Mm9::chr6:41231266..41231303,+#_b8d52d2497f0ce1c9e2fb7254160103cp1@ENSMUST00000103282
1.56e-56FFCP PHASE2:Mm9::chr6:41494376..41494389,-#_b8d52d2497f0ce1c9e2fb7254160103cp@chr6:41494376..41494389, -
1.56e-56FFCP PHASE1:Mm9::chr6:41231266..41231303,+#_b8d52d2497f0ce1c9e2fb7254160103cp1@ENSMUST00000103282
1.56e-56FFCP PHASE1:Mm9::chr6:41494376..41494389,-#_b8d52d2497f0ce1c9e2fb7254160103cp@chr6:41494376..41494389, -
1.67e-56FFCP PHASE2:Mm9::chr6:41493801..41493826,+#_c31a059ba4220debd756dd822a8e33a2p1@ENSMUST00000103298, p1@uc009bpy.1
1.67e-56FFCP PHASE1:Mm9::chr6:41493801..41493826,+#_c31a059ba4220debd756dd822a8e33a2p1@ENSMUST00000103298, p1@uc009bpy.1
1.92e-56FFCP PHASE2:Mm9::chr6:41492643..41492662,+#_facf78968310886ecf01a851c8d15ea2p@chr6:41492643..41492662, +
1.92e-56FFCP PHASE1:Mm9::chr6:41492643..41492662,+#_facf78968310886ecf01a851c8d15ea2p@chr6:41492643..41492662, +
2.05e-56FFCP PHASE2:Mm9::chr14:54794540..54794554,+#_19bd1b1139d58bfe8bf1620059eb7ee3p@chr14:54794540..54794554, +
2.05e-56FFCP PHASE1:Mm9::chr14:54794540..54794554,+#_19bd1b1139d58bfe8bf1620059eb7ee3p@chr14:54794540..54794554, +
2.23e-56FFCP PHASE1:Mm9::chr14:54496363..54496388,+#_7f29bcecbd6662959ac195940d7a6976p@chr14:54496363..54496388, +
2.23e-56FFCP PHASE2:Mm9::chr14:54496363..54496388,+#_7f29bcecbd6662959ac195940d7a6976p@chr14:54496363..54496388, +
2.23e-56FFCP PHASE2:Mm9::chr6:41491801..41491815,-#_7f29bcecbd6662959ac195940d7a6976p@chr6:41491801..41491815, -
2.23e-56FFCP PHASE1:Mm9::chr6:41491801..41491815,-#_7f29bcecbd6662959ac195940d7a6976p@chr6:41491801..41491815, -
2.36e-56FFCP PHASE2:Mm9::chr6:41492605..41492621,+#_ba42994c7f962a410bc33809207b312dp@chr6:41492605..41492621, +
2.36e-56FFCP PHASE1:Mm9::chr6:41492605..41492621,+#_ba42994c7f962a410bc33809207b312dp@chr6:41492605..41492621, +
2.54e-56FFCP PHASE2:Mm9::chr11:53448200..53448205,-#_a8538213da0ea56c2bb7e97ebc8c106ep1@Il13
2.54e-56FFCP PHASE1:Mm9::chr11:53448200..53448205,-#_a8538213da0ea56c2bb7e97ebc8c106ep1@Il13
2.88e-56FFCP PHASE2:Mm9::chr7:133512914..133512925,-#_214a48fba15d1b292477dc831af2696fp7@Lat
2.88e-56FFCP PHASE1:Mm9::chr7:133512914..133512925,-#_214a48fba15d1b292477dc831af2696fp7@Lat
3.14e-56FFCP PHASE2:Mm9::chr6:41138311..41138333,+#_60dd54098b52d5d1f2ce985e33267a6ap@chr6:41138311..41138333, +
3.14e-56FFCP PHASE1:Mm9::chr6:41138311..41138333,+#_60dd54098b52d5d1f2ce985e33267a6ap@chr6:41138311..41138333, +
4.06e-56FFCP PHASE2:Mm9::chr6:40996879..40996890,+#_773a60c769ee81798dfb5242404cdda3p5@uc009bnp.1, p5@uc012eki.1
4.06e-56FFCP PHASE1:Mm9::chr6:40996879..40996890,+#_773a60c769ee81798dfb5242404cdda3p5@uc009bnp.1, p5@uc012eki.1
4.76e-56FFCP PHASE2:Mm9::chr6:41483146..41483158,+#_0b3cccf45f399ccdf1c0ab87637c9d2fp6@uc009bpa.1
4.76e-56FFCP PHASE1:Mm9::chr6:41483146..41483158,+#_0b3cccf45f399ccdf1c0ab87637c9d2fp6@uc009bpa.1
4.76e-56FFCP PHASE1:Mm9::chr7:133512935..133512936,-#_0b3cccf45f399ccdf1c0ab87637c9d2fp8@Lat
4.76e-56FFCP PHASE2:Mm9::chr4:125978325..125978339,-#_0b3cccf45f399ccdf1c0ab87637c9d2fp@chr4:125978325..125978339, -
4.76e-56FFCP PHASE2:Mm9::chr7:133512935..133512936,-#_0b3cccf45f399ccdf1c0ab87637c9d2fp8@Lat
4.76e-56FFCP PHASE1:Mm9::chr4:125978325..125978339,-#_0b3cccf45f399ccdf1c0ab87637c9d2fp@chr4:125978325..125978339, -
3.9e-55FFCP PHASE2:Mm9::chr19:10904535..10904553,-#_9efc2e8faf195de2be4e5b1ffd4f9bcap2@Cd6
3.9e-55FFCP PHASE1:Mm9::chr19:10904535..10904553,-#_9efc2e8faf195de2be4e5b1ffd4f9bcap2@Cd6
4.2e-55FFCP PHASE1:Mm9::chr11:52075039..52075066,+#_30712aeb888a399c934429e8850aaacdp@chr11:52075039..52075066, +
4.2e-55FFCP PHASE2:Mm9::chr11:52075039..52075066,+#_30712aeb888a399c934429e8850aaacdp@chr11:52075039..52075066, +