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UBERON:0007844

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Name:cartilage element
Namespace:FANTOM
Definition:"Skeletal element that is composed of cartilage tissue and may be permanent or transient." [VSAO:curator]
Xrefs:
links:

AAO:0011130
FMA:55107
VSAO:0000000
XAO:0004013

ZFA:0001501
Synonyms: "cartilage" RELATED [VSAO:0000000]
"cartilage element" EXACT []
"cartilage organ" EXACT [FMA:55107]
"chondrogenic element" EXACT [VSAO:0000000]
Comments:AO notes: TAO still mixes tissue and element
Subset: organ_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0004765(skeletal element)
develops_from:UBERON:0005863(cartilaginous condensation)



Children

is a:UBERON:0010885 (hindlimb cartilage element),UBERON:0011135 (intervertebral cartilage)
develops from:UBERON:0002513 (endochondral bone)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007844 (cartilage element), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.25e-162FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_4c2ec95e9e84c55dda77da68ef4c880ap@chr3:174737010..174737023, +
1.25e-162FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_4c2ec95e9e84c55dda77da68ef4c880ap@chr3:174737010..174737023, +
3.92e-140FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_2bcd42168fce003e0c3bfaa6a5bb6df9p4@PAX1
3.92e-140FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_2bcd42168fce003e0c3bfaa6a5bb6df9p4@PAX1
4.22e-99FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_fd5dff9fc10af0bf3d0c8b68c715e4f1p@chr5:30104176..30104187, -
4.22e-99FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_fd5dff9fc10af0bf3d0c8b68c715e4f1p@chr5:30104176..30104187, -
1.06e-78FFCP PHASE1:Hg19::chr4:13546130..13546145,-#_2f6e0293416017a5443f80dff78fa286p4@NKX3-2
1.06e-78FFCP PHASE2:Hg19::chr4:13546130..13546145,-#_2f6e0293416017a5443f80dff78fa286p4@NKX3-2
2.52e-71FFCP PHASE1:Hg19::chr9:114135497..114135526,-#_d19b58e7be1089708ddd9fd9521566f8p@chr9:114135497..114135526, -
2.52e-71FFCP PHASE2:Hg19::chr9:114135497..114135526,-#_d19b58e7be1089708ddd9fd9521566f8p@chr9:114135497..114135526, -
7.4e-71FFCP PHASE1:Hg19::chr2:241897125..241897142,-#_1085d47587e78793ff475e326323bef9p@chr2:241897125..241897142, -
7.4e-71FFCP PHASE2:Hg19::chr2:241897125..241897142,-#_1085d47587e78793ff475e326323bef9p@chr2:241897125..241897142, -
6.33e-70FFCP PHASE2:Hg19::chr3:80727046..80727051,-#_b5091c4bd812e811e14386a7d2c57d21p@chr3:80727046..80727051, -
6.33e-70FFCP PHASE1:Hg19::chr3:80727046..80727051,-#_b5091c4bd812e811e14386a7d2c57d21p@chr3:80727046..80727051, -
4.8e-67FFCP PHASE2:Hg19::chr2:242004292..242004308,+#_a3a7139287be106b64f4ec62bb851edfp15@SNED1
4.8e-67FFCP PHASE1:Hg19::chr2:242004292..242004308,+#_a3a7139287be106b64f4ec62bb851edfp15@SNED1
1.24e-66FFCP PHASE1:Hg19::chr1:19811132..19811155,-#_998ac72978b4baa8872cc7c59c374146p20@CAPZB
1.24e-66FFCP PHASE2:Hg19::chr1:19811132..19811155,-#_998ac72978b4baa8872cc7c59c374146p20@CAPZB
1.26e-62FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_bfc61f0cd11532feaf31c297902f0968p@chr1:19778678..19778689, -
1.26e-62FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_bfc61f0cd11532feaf31c297902f0968-, p@chr1:19778678..19778689
1.1e-59FFCP PHASE1:Hg19::chr2:241897189..241897221,-#_5c4b8d25b6890a8dde141ba731b30434p@chr2:241897189..241897221, -
1.1e-59FFCP PHASE2:Hg19::chr2:241897189..241897221,-#_5c4b8d25b6890a8dde141ba731b30434p@chr2:241897189..241897221, -
1.55e-57FFCP PHASE2:Hg19::chr14:23574186..23574212,-#_22bd8fa31552c05234366680f4737081p1@uc010aki.1
1.55e-57FFCP PHASE1:Hg19::chr14:23574186..23574212,-#_22bd8fa31552c05234366680f4737081p1@uc010aki.1
4.09e-56FFCP PHASE2:Hg19::chr14:61190754..61190776,-#_9c47f71ab4cfc289468a0d667ba1c70ap6@SIX4
4.09e-56FFCP PHASE1:Hg19::chr14:61190754..61190776,-#_9c47f71ab4cfc289468a0d667ba1c70ap6@SIX4
3.74e-53FFCP PHASE1:Hg19::chr14:23574164..23574179,-#_17559775f72490a9bc3a85dc1c9123cbp3@uc010aki.1
3.74e-53FFCP PHASE2:Hg19::chr14:23574164..23574179,-#_17559775f72490a9bc3a85dc1c9123cbp3@uc010aki.1
1.15e-51FFCP PHASE1:Hg19::chr20:21687260..21687270,+#_9a5f3e08834cb921953aa9848af9c624p3@PAX1
1.15e-51FFCP PHASE2:Hg19::chr20:21687260..21687270,+#_9a5f3e08834cb921953aa9848af9c624p3@PAX1
2.3e-51FFCP PHASE2:Hg19::chr10:81923378..81923389,-#_a4c57be1c957f38d862b316c10d6531bp@chr10:81923378..81923389, -
2.3e-51FFCP PHASE1:Hg19::chr10:81923378..81923389,-#_a4c57be1c957f38d862b316c10d6531bp@chr10:81923378..81923389, -
3.24e-51FFCP PHASE2:Hg19::chr2:12248310..12248334,-#_1bb76e95ce2ff62869448879cc6723bcp@chr2:12248310..12248334, -
3.24e-51FFCP PHASE1:Hg19::chr2:12248310..12248334,-#_1bb76e95ce2ff62869448879cc6723bcp@chr2:12248310..12248334, -
8.0e-51FFCP PHASE2:Hg19::chr7:18832913..18832946,+#_10404810aa853646fd63d699e5ddc18bp19@HDAC9
8.0e-51FFCP PHASE1:Hg19::chr7:18832913..18832946,+#_10404810aa853646fd63d699e5ddc18bp19@HDAC9
3.4e-49FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_1d5fecb23c075fab671abbf093a957cep26@Myo18a
3.4e-49FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_1d5fecb23c075fab671abbf093a957cep26@Myo18a
4.96e-49FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_05ef4c2858912242e5c1155001b6f636p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_05ef4c2858912242e5c1155001b6f636p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_05ef4c2858912242e5c1155001b6f636p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_05ef4c2858912242e5c1155001b6f636p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_05ef4c2858912242e5c1155001b6f636p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_05ef4c2858912242e5c1155001b6f636p@chr2:32482372..32482381, +
5.06e-49FFCP PHASE1:Hg19::chr7:158224707..158224729,-#_ba45d1d5326330a3c4c5725b030bdc49-, p@chr7:158224707..158224729
5.06e-49FFCP PHASE2:Hg19::chr7:158224707..158224729,-#_ba45d1d5326330a3c4c5725b030bdc49p@chr7:158224707..158224729, -
5.24e-48FFCP PHASE2:Hg19::chr1:65888177..65888194,+#_c52f380569069fcdb00e5012ded1d0b0+, p@chr1:65888177..65888194
5.24e-48FFCP PHASE1:Hg19::chr1:65888177..65888194,+#_c52f380569069fcdb00e5012ded1d0b0p@chr1:65888177..65888194, +
2.98e-45FFCP PHASE1:Hg19::chr4:13546583..13546593,-#_c08288d34cdbf769ff708a98e027466ap3@NKX3-2
2.98e-45FFCP PHASE2:Hg19::chr4:13546583..13546593,-#_c08288d34cdbf769ff708a98e027466ap3@NKX3-2
2.92e-44FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_ce5020629f0d96ab70fdc009d9120d83p1@MGC27382
2.92e-44FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_ce5020629f0d96ab70fdc009d9120d83p1@MGC27382
3.15e-44FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_bbe3e90256ab4e53ec43b8f42cd9a0a0p@chr6:51525810..51525817, +
3.15e-44FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_bbe3e90256ab4e53ec43b8f42cd9a0a0p@chr6:51525810..51525817, +
1.71e-43FFCP PHASE1:Hg19::chr7:18832834..18832859,+#_e22cb3939371f88af1ab6e1a9a0d5d1dp18@HDAC9
1.71e-43FFCP PHASE2:Hg19::chr7:18832834..18832859,+#_e22cb3939371f88af1ab6e1a9a0d5d1dp18@HDAC9
1.48e-40FFCP PHASE2:Hg19::chr13:24914614..24914622,-#_058a144febb4026906076a760e3ce106p@chr13:24914614..24914622, -
1.48e-40FFCP PHASE1:Hg19::chr9:33028063..33028067,-#_058a144febb4026906076a760e3ce106p@chr9:33028063..33028067, -
1.48e-40FFCP PHASE2:Hg19::chr9:33028063..33028067,-#_058a144febb4026906076a760e3ce106-, p@chr9:33028063..33028067
1.48e-40FFCP PHASE1:Hg19::chr13:24914614..24914622,-#_058a144febb4026906076a760e3ce106p@chr13:24914614..24914622, -
1.64e-40FFCP PHASE1:Hg19::chr20:21686317..21686350,+#_da0c6a975d9214793dd53ba681a02c19p1@PAX1
1.64e-40FFCP PHASE2:Hg19::chr20:21686317..21686350,+#_da0c6a975d9214793dd53ba681a02c19p1@PAX1
1.81e-40FFCP PHASE2:Hg19::chr1:78769549..78769554,+#_9e3df8ed69efe7060816350a0c07a968p5@PTGFR
1.81e-40FFCP PHASE1:Hg19::chr1:78769549..78769554,+#_9e3df8ed69efe7060816350a0c07a968p5@PTGFR
2.13e-40FFCP PHASE1:Hg19::chr2:241897363..241897398,+#_4763b75d9a6cea458a4f8d2af5e47ae1p@chr2:241897363..241897398, +
2.13e-40FFCP PHASE2:Hg19::chr2:241897363..241897398,+#_4763b75d9a6cea458a4f8d2af5e47ae1p@chr2:241897363..241897398, +
9.78e-40FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_6c0a116655cc893ea837b3986089f019p@chr19:4876870..4876880, -
9.78e-40FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_6c0a116655cc893ea837b3986089f019p@chr19:4876870..4876880, -
1.15e-39FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_9b27e08b1688b4a32bc67b187fe3a31cp@chr11:67063327..67063335, +
1.15e-39FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_9b27e08b1688b4a32bc67b187fe3a31cp@chr6:4490674..4490679, +
1.15e-39FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_9b27e08b1688b4a32bc67b187fe3a31c+, p@chr6:4490674..4490679
1.15e-39FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_9b27e08b1688b4a32bc67b187fe3a31cp@chr16:24096441..24096449, +
1.15e-39FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_9b27e08b1688b4a32bc67b187fe3a31cp@chr16:24096441..24096449, +
1.15e-39FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_9b27e08b1688b4a32bc67b187fe3a31cp@chr1:174140324..174140335, -
1.15e-39FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_9b27e08b1688b4a32bc67b187fe3a31cp@chr11:67063327..67063335, +
1.15e-39FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_9b27e08b1688b4a32bc67b187fe3a31cp@chr1:174140324..174140335, -
1.55e-39FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_1d57c2e8f5a65e838f28b87d695aac08p@chr1:174143249..174143260, -
1.55e-39FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_1d57c2e8f5a65e838f28b87d695aac08p@chr1:174143249..174143260, -
3.03e-39FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_bb833e7537797c189aaa792cb8a76ca2p@chr6:51525869..51525891, +
3.03e-39FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_bb833e7537797c189aaa792cb8a76ca2p@chr6:51525869..51525891, +
3.04e-39FFCP PHASE1:Hg19::chr20:21686290..21686311,+#_42cad67c6dc24a307f674808e359188cp2@PAX1
3.04e-39FFCP PHASE2:Hg19::chr20:21686290..21686311,+#_42cad67c6dc24a307f674808e359188cp2@PAX1
7.19e-39FFCP PHASE1:Hg19::chr5:140887761..140887777,+#_76ab97e2fa2db8ece03e356d9280d60ap@chr5:140887761..140887777, +
7.19e-39FFCP PHASE2:Hg19::chr7:18832759..18832786,+#_76ab97e2fa2db8ece03e356d9280d60ap16@HDAC9
7.19e-39FFCP PHASE2:Hg19::chr5:140887761..140887777,+#_76ab97e2fa2db8ece03e356d9280d60ap@chr5:140887761..140887777, +
7.19e-39FFCP PHASE1:Hg19::chr7:18832759..18832786,+#_76ab97e2fa2db8ece03e356d9280d60ap16@HDAC9
9.31e-39FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_d701314b31332efd21b17fcdcca9f59cp3@Asb16
9.31e-39FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_d701314b31332efd21b17fcdcca9f59cp3@Asb16
1.24e-38FFCP PHASE1:Hg19::chr4:77068930..77068959,-#_cc9ca7c5c9adbed141ad405d45a632f2p4@NUP54
1.24e-38FFCP PHASE2:Hg19::chr4:77068930..77068959,-#_cc9ca7c5c9adbed141ad405d45a632f2p4@NUP54
2.08e-38FFCP PHASE2:Hg19::chr2:241938405..241938416,+#_9cd110c464013aa1ea12b1bc632f89b8p@chr2:241938405..241938416, +
2.08e-38FFCP PHASE1:Hg19::chr2:241938405..241938416,+#_9cd110c464013aa1ea12b1bc632f89b8p@chr2:241938405..241938416, +
3.34e-38FFCP PHASE1:Hg19::chr4:13546632..13546662,-#_4f6a0bd45e15799bf83e186978dbad9ep1@NKX3-2
3.34e-38FFCP PHASE2:Hg19::chr4:13546632..13546662,-#_4f6a0bd45e15799bf83e186978dbad9ep1@NKX3-2
3.68e-38FFCP PHASE1:Hg19::chr6:158490457..158490470,+#_448f43ad005308ff7155454ff4be04d2p10@SYNJ2
3.68e-38FFCP PHASE2:Hg19::chr6:158490457..158490470,+#_448f43ad005308ff7155454ff4be04d2p10@SYNJ2
5.39e-38FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_7148c5b1faccd8d10998afd1fa925130p@chr9:16138889..16138902, -
5.39e-38FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_7148c5b1faccd8d10998afd1fa925130p@chr9:16138889..16138902, -
8.66e-38FFCP PHASE1:Hg19::chr8:78311303..78311320,+#_88e51ba5d296fda1351978db32fbee65p2@ENST00000518706
8.66e-38FFCP PHASE2:Hg19::chr8:78311303..78311320,+#_88e51ba5d296fda1351978db32fbee65p2@ENST00000518706