Personal tools

UBERON:0010258

From FANTOM5_SSTAR

Jump to: navigation, search

Name:mesenchyme from rhombencephalic neural crest
Namespace:FANTOM
Xrefs:
links:
EHDAA2:0004423

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0007213(mesenchyme derived from head neural crest)
develops_from:UBERON:0003852(rhombencephalon neural crest)
part_of:UBERON:0007213(mesenchyme derived from head neural crest)



Children

is a:UBERON:0005705 (primary palate mesenchyme),UBERON:0010259 (1st arch mesenchyme from neural crest),UBERON:0010334 (maxillary process mesenchyme from neural crest)
part of:UBERON:0010253 (1st arch maxillary mesenchyme from neural crest)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010258 (mesenchyme from rhombencephalic neural crest), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_14d1eb73314a7d940e280c06f56c8015p14@C17orf67
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_14d1eb73314a7d940e280c06f56c8015p14@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_b2327774549a0764ae59e4a7a0536ffcp11@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_b2327774549a0764ae59e4a7a0536ffcp13@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_b2327774549a0764ae59e4a7a0536ffcp12@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_b2327774549a0764ae59e4a7a0536ffcp@chr8:57353655..57353662, -
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_b2327774549a0764ae59e4a7a0536ffcp11@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_b2327774549a0764ae59e4a7a0536ffcp12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_b2327774549a0764ae59e4a7a0536ffcp@chr8:57353655..57353662, -
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_b2327774549a0764ae59e4a7a0536ffcp13@C17orf67
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_69c66c06e2ec2f07908a1db606ee2b1bp14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_69c66c06e2ec2f07908a1db606ee2b1bp14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_69c66c06e2ec2f07908a1db606ee2b1bp@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_69c66c06e2ec2f07908a1db606ee2b1bp@chr5:75912402..75912418, -
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_8b3a22653f980ebaf9dc1430d55aae06p@chr4:151505582..151505614, +
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_8b3a22653f980ebaf9dc1430d55aae06p@chr4:151505582..151505614, +
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_7ef55ecc38ce1f518f11ee727986b05ep@chr8:57354278..57354286, +
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_7ef55ecc38ce1f518f11ee727986b05ep9@C17orf67
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_7ef55ecc38ce1f518f11ee727986b05ep17@RSRC1
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_7ef55ecc38ce1f518f11ee727986b05e+, p@chr8:57354278..57354286
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_7ef55ecc38ce1f518f11ee727986b05ep9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_7ef55ecc38ce1f518f11ee727986b05ep17@RSRC1
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_c203c4b01e6a5ac1af8062ce54991488p@chr8:57802672..57802682, -
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_c203c4b01e6a5ac1af8062ce54991488p@chr8:57802672..57802682, -
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_b395f27bb951df63639be68ab5dc9440p1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_b395f27bb951df63639be68ab5dc9440p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_b395f27bb951df63639be68ab5dc9440p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_b395f27bb951df63639be68ab5dc9440p1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_b395f27bb951df63639be68ab5dc9440p7@ALX1
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_b395f27bb951df63639be68ab5dc9440p7@ALX1
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_227a479e380a22bf39f9cbb04c96ab8fp@chr2:33519090..33519092, +
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_227a479e380a22bf39f9cbb04c96ab8fp@chr2:33519090..33519092, +
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_227a479e380a22bf39f9cbb04c96ab8fp23@FLT1
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_227a479e380a22bf39f9cbb04c96ab8fp23@FLT1
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_6c65aa93391cd6e040f0b1c1a58dfc7bp@chr8:57353666..57353675, -
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_6c65aa93391cd6e040f0b1c1a58dfc7bp@chr8:57354143..57354152, +
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_6c65aa93391cd6e040f0b1c1a58dfc7bp@chr8:57353779..57353790, -
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_6c65aa93391cd6e040f0b1c1a58dfc7bp@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_6c65aa93391cd6e040f0b1c1a58dfc7b-, p@chr8:57353779..57353790
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_6c65aa93391cd6e040f0b1c1a58dfc7bp@chr8:57353666..57353675, -
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_0698ff47211217261cf9b67c2a0a3f9fp8@LHX8
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_0698ff47211217261cf9b67c2a0a3f9fp2@TAS1R1
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_0698ff47211217261cf9b67c2a0a3f9fp12@FAM65C
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_0698ff47211217261cf9b67c2a0a3f9fp8@LHX8
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_0698ff47211217261cf9b67c2a0a3f9fp2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_0698ff47211217261cf9b67c2a0a3f9fp12@FAM65C
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_2673c87e70cbb2a39da2b1ee8e70e518p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_2673c87e70cbb2a39da2b1ee8e70e518p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_2673c87e70cbb2a39da2b1ee8e70e518p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_2673c87e70cbb2a39da2b1ee8e70e518p@chr5:75912831..75912842, -
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_2c12b28ec6f8d6e5b01f19b444d69241p@chr6:46190219..46190230, -
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_2c12b28ec6f8d6e5b01f19b444d69241p@chr9:125165007..125165016, +
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_2c12b28ec6f8d6e5b01f19b444d69241p@chr9:125165007..125165016, +
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_2c12b28ec6f8d6e5b01f19b444d69241p@chr6:46190219..46190230, -
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_fd59d864e0e92cc04cb9b2cffbbb8a85p@chr10:15760985..15760992, -
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_fd59d864e0e92cc04cb9b2cffbbb8a85p5@PENK
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_fd59d864e0e92cc04cb9b2cffbbb8a85p5@PENK
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_fd59d864e0e92cc04cb9b2cffbbb8a85p4@CPZ
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_fd59d864e0e92cc04cb9b2cffbbb8a85p@chr10:15760985..15760992, -
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_fd59d864e0e92cc04cb9b2cffbbb8a85p4@CPZ
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_afa5f1fda8cad71f10e0e8bd90692f72p9@SIX1
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_afa5f1fda8cad71f10e0e8bd90692f72p9@SIX1
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_a29dcd04decf8025fbf8d9e46c283b3ap@chr6:134327986..134327991, -
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_a29dcd04decf8025fbf8d9e46c283b3ap@chr6:134327986..134327991, -
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_ead9c4ad25a2798e422bc4de742e96adp@chr13:58291223..58291226, +
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_ead9c4ad25a2798e422bc4de742e96ad-, p@chr8:57353676..57353688
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_ead9c4ad25a2798e422bc4de742e96adp@chr8:57353676..57353688, -
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_ead9c4ad25a2798e422bc4de742e96adp@chr13:58291223..58291226, +
9.85e-34FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_60c9fdb541d6e95e2d3ca5ed0fabd3b4p12@FBN2
9.85e-34FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_60c9fdb541d6e95e2d3ca5ed0fabd3b4p4@PLAC1
9.85e-34FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_60c9fdb541d6e95e2d3ca5ed0fabd3b4-, p@chr5:19721484..19721507
9.85e-34FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_60c9fdb541d6e95e2d3ca5ed0fabd3b4p4@PLAC1
9.85e-34FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_60c9fdb541d6e95e2d3ca5ed0fabd3b4p12@FBN2
9.85e-34FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_60c9fdb541d6e95e2d3ca5ed0fabd3b4p@chr5:19721484..19721507, -
7.48e-30FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_3c30427a2ad63ed3d72d0bf35d40fc8b+, p@chr8:57354360..57354367
7.48e-30FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_3c30427a2ad63ed3d72d0bf35d40fc8b-, p@chr8:57353982..57353991
7.48e-30FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_3c30427a2ad63ed3d72d0bf35d40fc8bp@chr8:57353982..57353991, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_3c30427a2ad63ed3d72d0bf35d40fc8bp@chr8:57353804..57353821, -
7.48e-30FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_3c30427a2ad63ed3d72d0bf35d40fc8bp@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_3c30427a2ad63ed3d72d0bf35d40fc8bp@chr8:57354360..57354367, +
9.99e-30FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_ce5793f0abeb1bdc38fdd3c12f171a07p7@SHOX2
9.99e-30FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_ce5793f0abeb1bdc38fdd3c12f171a07p7@SHOX2
9.99e-30FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_ce5793f0abeb1bdc38fdd3c12f171a07p10@ITGA8
9.99e-30FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_ce5793f0abeb1bdc38fdd3c12f171a07p10@ITGA8
1.33e-29FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_4c8a653c9ae9ccd76b2d01013d4ade1ep@chrX:132670143..132670152, -
1.33e-29FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_4c8a653c9ae9ccd76b2d01013d4ade1ep@chr17:79071218..79071221, -
1.33e-29FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_4c8a653c9ae9ccd76b2d01013d4ade1ep@chr17:79071218..79071221, -
1.33e-29FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_4c8a653c9ae9ccd76b2d01013d4ade1ep@chr22:28193943..28193956, -
1.33e-29FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_4c8a653c9ae9ccd76b2d01013d4ade1ep@chr22:28193943..28193956, -
1.33e-29FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_4c8a653c9ae9ccd76b2d01013d4ade1ep@chrX:132670143..132670152, -
1.78e-29FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_3dd06d822d83b1a3b0eed02c5d0ff251p@chr1:21904551..21904569, -
1.78e-29FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_3dd06d822d83b1a3b0eed02c5d0ff251p@chr1:21904551..21904569, -
3.16e-29FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_c5ec2185a7aff2305460af703226e619p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_c5ec2185a7aff2305460af703226e619p18@MEF2D
3.16e-29FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_c5ec2185a7aff2305460af703226e619p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_c5ec2185a7aff2305460af703226e619p@chr8:57359975..57359992, -
3.16e-29FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_c5ec2185a7aff2305460af703226e619-, p@chr8:57359975..57359992
3.16e-29FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_c5ec2185a7aff2305460af703226e619p18@MEF2D
4.2e-29FFCP PHASE1:Hg19::chr1:6615468..6615485,+#_c217b88c3c07949c1a2807c13840280dp1@TAS1R1
4.2e-29FFCP PHASE1:Hg19::chr13:36046127..36046134,+#_c217b88c3c07949c1a2807c13840280dp@chr13:36046127..36046134, +