Personal tools

UBERON:0010286

From FANTOM5_SSTAR

Jump to: navigation, search

Name:midbrain neural tube
Namespace:FANTOM
Definition:"Portion of neural tube that gives rise to the midbrain." [ZFA:0007039]
Xrefs:
links:

TAO:0007039

ZFA:0007039

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0004121(ectoderm-derived structure),UBERON:0005291(embryonic tissue)
part_of:UBERON:0003080(anterior neural tube)



Children

develops from:UBERON:0009616 (presumptive midbrain)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010286 (midbrain neural tube), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
9.37e-99FFCP PHASE1:Hg19::chr9:139916913..139916917,+#_9768417f73cb6e108417440f99f2affap@chr9:139916913..139916917, +
9.37e-99FFCP PHASE2:Hg19::chr10:62149979..62149980,-#_9768417f73cb6e108417440f99f2affap59@ANK3
9.37e-99FFCP PHASE2:Hg19::chr4:56229918..56229919,-#_9768417f73cb6e108417440f99f2affap@chr4:56229918..56229919, -
9.37e-99FFCP PHASE2:Hg19::chr1:24915966..24915971,+#_9768417f73cb6e108417440f99f2affap5@C1orf130
9.37e-99FFCP PHASE1:Hg19::chr4:56229918..56229919,-#_9768417f73cb6e108417440f99f2affap@chr4:56229918..56229919, -
9.37e-99FFCP PHASE1:Hg19::chr1:24915966..24915971,+#_9768417f73cb6e108417440f99f2affap5@C1orf130
9.37e-99FFCP PHASE1:Hg19::chr10:62149979..62149980,-#_9768417f73cb6e108417440f99f2affap59@ANK3
9.37e-99FFCP PHASE2:Hg19::chr9:139916913..139916917,+#_9768417f73cb6e108417440f99f2affa+, p@chr9:139916913..139916917
9.37e-99FFCP PHASE2:Hg19::chr10:68718064..68718067,-#_9768417f73cb6e108417440f99f2affap@chr10:68718064..68718067, -
9.37e-99FFCP PHASE1:Hg19::chr10:68718064..68718067,-#_9768417f73cb6e108417440f99f2affap@chr10:68718064..68718067, -
2.55e-98FFCP PHASE2:Hg19::chr1:65776926..65776928,+#_bb97fd695d6f02bfc83a6104ba1aedb3p@chr1:65776926..65776928, +
2.55e-98FFCP PHASE1:Hg19::chr1:65776926..65776928,+#_bb97fd695d6f02bfc83a6104ba1aedb3p@chr1:65776926..65776928, +
2.55e-98FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_bb97fd695d6f02bfc83a6104ba1aedb3p@chr18:74702556..74702558, -
2.55e-98FFCP PHASE1:Hg19::chr5:57935348..57935354,-#_bb97fd695d6f02bfc83a6104ba1aedb3p@chr5:57935348..57935354, -
2.55e-98FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_bb97fd695d6f02bfc83a6104ba1aedb3p@chr18:74702556..74702558, -
2.55e-98FFCP PHASE2:Hg19::chr5:57935348..57935354,-#_bb97fd695d6f02bfc83a6104ba1aedb3p@chr5:57935348..57935354, -
1.23e-66FFCP PHASE2:Hg19::chr10:22967066..22967069,-#_ec059ca11a7b2f70a427db088604b41ap@chr10:22967066..22967069, -
1.23e-66FFCP PHASE2:Hg19::chr8:53312058..53312067,-#_ec059ca11a7b2f70a427db088604b41ap@chr8:53312058..53312067, -
1.23e-66FFCP PHASE1:Hg19::chr16:81170013..81170024,-#_ec059ca11a7b2f70a427db088604b41ap6@PKD1L2
1.23e-66FFCP PHASE2:Hg19::chr16:81170013..81170024,-#_ec059ca11a7b2f70a427db088604b41ap6@PKD1L2
1.23e-66FFCP PHASE1:Hg19::chr8:53312058..53312067,-#_ec059ca11a7b2f70a427db088604b41ap@chr8:53312058..53312067, -
1.23e-66FFCP PHASE1:Hg19::chr16:57309513..57309516,-#_ec059ca11a7b2f70a427db088604b41ap@chr16:57309513..57309516, -
1.23e-66FFCP PHASE1:Hg19::chr10:22967066..22967069,-#_ec059ca11a7b2f70a427db088604b41ap@chr10:22967066..22967069, -
1.23e-66FFCP PHASE2:Hg19::chr16:57309513..57309516,-#_ec059ca11a7b2f70a427db088604b41ap@chr16:57309513..57309516, -
2.39e-66FFCP PHASE1:Hg19::chr11:7340444..7340448,+#_cc260b842af583953ae41ea104adb9cdp@chr11:7340444..7340448, +
2.39e-66FFCP PHASE2:Hg19::chr11:7340444..7340448,+#_cc260b842af583953ae41ea104adb9cdp@chr11:7340444..7340448, +
2.39e-66FFCP PHASE2:Hg19::chr1:44956567..44956571,+#_cc260b842af583953ae41ea104adb9cdp@chr1:44956567..44956571, +
2.39e-66FFCP PHASE2:Hg19::chr14:95727527..95727529,-#_cc260b842af583953ae41ea104adb9cdp@chr14:95727527..95727529, -
2.39e-66FFCP PHASE1:Hg19::chr1:44956567..44956571,+#_cc260b842af583953ae41ea104adb9cdp@chr1:44956567..44956571, +
2.39e-66FFCP PHASE1:Hg19::chr14:95727527..95727529,-#_cc260b842af583953ae41ea104adb9cdp@chr14:95727527..95727529, -
4.66e-66FFCP PHASE1:Hg19::chr13:34922094..34922105,+#_9043eea9c0bda32b236908f6af487883p@chr13:34922094..34922105, +
4.66e-66FFCP PHASE2:Hg19::chr13:34922094..34922105,+#_9043eea9c0bda32b236908f6af487883p@chr13:34922094..34922105, +
4.66e-66FFCP PHASE2:Hg19::chr9:79516011..79516022,-#_9043eea9c0bda32b236908f6af487883p@chr9:79516011..79516022, -
4.66e-66FFCP PHASE1:Hg19::chr14:105166013..105166017,+#_9043eea9c0bda32b236908f6af487883p@chr14:105166013..105166017, +
4.66e-66FFCP PHASE2:Hg19::chr13:43872447..43872452,-#_9043eea9c0bda32b236908f6af487883p@chr13:43872447..43872452, -
4.66e-66FFCP PHASE1:Hg19::chr9:79516011..79516022,-#_9043eea9c0bda32b236908f6af487883p@chr9:79516011..79516022, -
4.66e-66FFCP PHASE2:Hg19::chr17:29623232..29623241,-#_9043eea9c0bda32b236908f6af487883p8@OMG
4.66e-66FFCP PHASE1:Hg19::chr13:43872447..43872452,-#_9043eea9c0bda32b236908f6af487883p@chr13:43872447..43872452, -
4.66e-66FFCP PHASE1:Hg19::chr17:29623232..29623241,-#_9043eea9c0bda32b236908f6af487883p8@OMG
4.66e-66FFCP PHASE2:Hg19::chr14:105166013..105166017,+#_9043eea9c0bda32b236908f6af487883p@chr14:105166013..105166017, +
1.46e-50FFCP PHASE2:Hg19::chr9:108178201..108178203,+#_446aab7d8e6f245cb80d710f4aaafc03p@chr9:108178201..108178203, +
1.46e-50FFCP PHASE1:Hg19::chr9:108178201..108178203,+#_446aab7d8e6f245cb80d710f4aaafc03p@chr9:108178201..108178203, +
1.46e-50FFCP PHASE1:Hg19::chrX:28627633..28627642,+#_446aab7d8e6f245cb80d710f4aaafc03p@chrX:28627633..28627642, +
1.46e-50FFCP PHASE2:Hg19::chrX:28627633..28627642,+#_446aab7d8e6f245cb80d710f4aaafc03p@chrX:28627633..28627642, +
3.99e-50FFCP PHASE2:Hg19::chr6:89803656..89803659,+#_31e1e88b42476749ba702b19f7795ca6p@chr6:89803656..89803659, +
3.99e-50FFCP PHASE1:Hg19::chr3:50717966..50717971,+#_31e1e88b42476749ba702b19f7795ca6+, p@chr3:50717966..50717971
3.99e-50FFCP PHASE2:Hg19::chr3:50717966..50717971,+#_31e1e88b42476749ba702b19f7795ca6p@chr3:50717966..50717971, +
3.99e-50FFCP PHASE1:Hg19::chr20:52570026..52570037,-#_31e1e88b42476749ba702b19f7795ca6p@chr20:52570026..52570037, -
3.99e-50FFCP PHASE1:Hg19::chr6:134626498..134626502,-#_31e1e88b42476749ba702b19f7795ca6p@chr6:134626498..134626502, -
3.99e-50FFCP PHASE1:Hg19::chr6:89803656..89803659,+#_31e1e88b42476749ba702b19f7795ca6p@chr6:89803656..89803659, +
3.99e-50FFCP PHASE2:Hg19::chr20:52570026..52570037,-#_31e1e88b42476749ba702b19f7795ca6p@chr20:52570026..52570037, -
3.99e-50FFCP PHASE2:Hg19::chr6:134626498..134626502,-#_31e1e88b42476749ba702b19f7795ca6p@chr6:134626498..134626502, -
6.58e-50FFCP PHASE2:Hg19::chr17:3479944..3479947,-#_d1e83dbf13cc95002434f61a4d74508d-, p@chr17:3479944..3479947
6.58e-50FFCP PHASE2:Hg19::chr22:48980473..48980481,+#_d1e83dbf13cc95002434f61a4d74508dp@chr22:48980473..48980481, +
6.58e-50FFCP PHASE2:Hg19::chr6:163745521..163745530,-#_d1e83dbf13cc95002434f61a4d74508dp2@LOC285796
6.58e-50FFCP PHASE1:Hg19::chr1:161275096..161275109,-#_d1e83dbf13cc95002434f61a4d74508dp@chr1:161275096..161275109, -
6.58e-50FFCP PHASE1:Hg19::chr18:26665245..26665249,+#_d1e83dbf13cc95002434f61a4d74508dp@chr18:26665245..26665249, +
6.58e-50FFCP PHASE2:Hg19::chr17:70910145..70910148,-#_d1e83dbf13cc95002434f61a4d74508dp@chr17:70910145..70910148, -
6.58e-50FFCP PHASE2:Hg19::chr9:19515907..19515918,-#_d1e83dbf13cc95002434f61a4d74508dp@chr9:19515907..19515918, -
6.58e-50FFCP PHASE1:Hg19::chr17:70910145..70910148,-#_d1e83dbf13cc95002434f61a4d74508dp@chr17:70910145..70910148, -
6.58e-50FFCP PHASE1:Hg19::chr17:3479944..3479947,-#_d1e83dbf13cc95002434f61a4d74508dp@chr17:3479944..3479947, -
6.58e-50FFCP PHASE1:Hg19::chr1:160009700..160009711,-#_d1e83dbf13cc95002434f61a4d74508dp10@KCNJ10
6.58e-50FFCP PHASE2:Hg19::chr1:160009700..160009711,-#_d1e83dbf13cc95002434f61a4d74508dp10@KCNJ10
6.58e-50FFCP PHASE1:Hg19::chr9:137240632..137240635,+#_d1e83dbf13cc95002434f61a4d74508dp@chr9:137240632..137240635, +
6.58e-50FFCP PHASE1:Hg19::chr6:163745521..163745530,-#_d1e83dbf13cc95002434f61a4d74508dp2@LOC285796
6.58e-50FFCP PHASE2:Hg19::chr9:137240632..137240635,+#_d1e83dbf13cc95002434f61a4d74508dp@chr9:137240632..137240635, +
6.58e-50FFCP PHASE2:Hg19::chr1:161275096..161275109,-#_d1e83dbf13cc95002434f61a4d74508d-, p@chr1:161275096..161275109
6.58e-50FFCP PHASE2:Hg19::chr18:26665245..26665249,+#_d1e83dbf13cc95002434f61a4d74508dp@chr18:26665245..26665249, +
6.58e-50FFCP PHASE1:Hg19::chr9:19515907..19515918,-#_d1e83dbf13cc95002434f61a4d74508dp@chr9:19515907..19515918, -
6.58e-50FFCP PHASE2:Hg19::chr6:151042126..151042135,+#_d1e83dbf13cc95002434f61a4d74508dp21@PLEKHG1
6.58e-50FFCP PHASE1:Hg19::chr6:151042126..151042135,+#_d1e83dbf13cc95002434f61a4d74508dp21@PLEKHG1
6.58e-50FFCP PHASE1:Hg19::chr22:48980473..48980481,+#_d1e83dbf13cc95002434f61a4d74508dp@chr22:48980473..48980481, +
2.38e-43FFCP PHASE1:Mm9::chr19:40804786..40804795,-#_3dbde2c95fb95f55071bca818f67d4d6p@chr19:40804786..40804795, -
2.38e-43FFCP PHASE2:Mm9::chr19:40804786..40804795,-#_3dbde2c95fb95f55071bca818f67d4d6p@chr19:40804786..40804795, -
6.62e-41FFCP PHASE1:Hg19::chr4:139891920..139891924,-#_48b8ef6d8d7612bfdc6c276d07c97646p@chr4:139891920..139891924, -
6.62e-41FFCP PHASE1:Hg19::chr5:60933634..60933637,+#_48b8ef6d8d7612bfdc6c276d07c97646p4@C5orf64
6.62e-41FFCP PHASE2:Hg19::chr5:60933634..60933637,+#_48b8ef6d8d7612bfdc6c276d07c97646p4@C5orf64
6.62e-41FFCP PHASE2:Hg19::chr4:139891920..139891924,-#_48b8ef6d8d7612bfdc6c276d07c97646p@chr4:139891920..139891924, -
9.91e-41FFCP PHASE1:Hg19::chr13:21100208..21100214,+#_5a749aceabd9c6a743fe191416575ff2p@chr13:21100208..21100214, +
9.91e-41FFCP PHASE2:Hg19::chr13:21100208..21100214,+#_5a749aceabd9c6a743fe191416575ff2p@chr13:21100208..21100214, +
9.91e-41FFCP PHASE1:Hg19::chrX:13792462..13792477,-#_5a749aceabd9c6a743fe191416575ff2p@chrX:13792462..13792477, -
9.91e-41FFCP PHASE1:Hg19::chr5:152017019..152017026,+#_5a749aceabd9c6a743fe191416575ff2p@chr5:152017019..152017026, +
9.91e-41FFCP PHASE2:Hg19::chr5:152017019..152017026,+#_5a749aceabd9c6a743fe191416575ff2p@chr5:152017019..152017026, +
9.91e-41FFCP PHASE2:Hg19::chrX:13792462..13792477,-#_5a749aceabd9c6a743fe191416575ff2p@chrX:13792462..13792477, -
1.48e-40FFCP PHASE1:Hg19::chr17:71046459..71046462,-#_e47df2a26c2c7465d1faffddf2782dfdp@chr17:71046459..71046462, -
1.48e-40FFCP PHASE2:Hg19::chr9:139911084..139911102,-#_e47df2a26c2c7465d1faffddf2782dfd-, p@chr9:139911084..139911102
1.48e-40FFCP PHASE2:Hg19::chr17:71046459..71046462,-#_e47df2a26c2c7465d1faffddf2782dfdp@chr17:71046459..71046462, -
1.48e-40FFCP PHASE1:Hg19::chr1:109806865..109806872,+#_e47df2a26c2c7465d1faffddf2782dfdp10@CELSR2
1.48e-40FFCP PHASE2:Hg19::chr1:161275238..161275250,-#_e47df2a26c2c7465d1faffddf2782dfdp@chr1:161275238..161275250, -
1.48e-40FFCP PHASE2:Hg19::chr1:109806865..109806872,+#_e47df2a26c2c7465d1faffddf2782dfdp10@CELSR2
1.48e-40FFCP PHASE1:Hg19::chr9:139911084..139911102,-#_e47df2a26c2c7465d1faffddf2782dfdp@chr9:139911084..139911102, -
1.48e-40FFCP PHASE1:Hg19::chr2:135170207..135170218,+#_e47df2a26c2c7465d1faffddf2782dfdp@chr2:135170207..135170218, +
1.48e-40FFCP PHASE2:Hg19::chr2:135170207..135170218,+#_e47df2a26c2c7465d1faffddf2782dfdp@chr2:135170207..135170218, +
1.48e-40FFCP PHASE1:Hg19::chr1:161275238..161275250,-#_e47df2a26c2c7465d1faffddf2782dfdp@chr1:161275238..161275250, -
2.21e-40FFCP PHASE1:Hg19::chr9:19513297..19513309,-#_e34ae49bd04ebad0c85caa0474bad41dp4@SLC24A2
2.21e-40FFCP PHASE2:Hg19::chr8:27522642..27522647,+#_e34ae49bd04ebad0c85caa0474bad41dp@chr8:27522642..27522647, +
2.21e-40FFCP PHASE2:Hg19::chrX:103046993..103046994,+#_e34ae49bd04ebad0c85caa0474bad41dp@chrX:103046993..103046994, +
2.21e-40FFCP PHASE1:Hg19::chr10:1246202..1246207,-#_e34ae49bd04ebad0c85caa0474bad41dp19@ADARB2
2.21e-40FFCP PHASE1:Hg19::chrX:103046993..103046994,+#_e34ae49bd04ebad0c85caa0474bad41dp@chrX:103046993..103046994, +
2.21e-40FFCP PHASE1:Hg19::chr10:1246245..1246252,-#_e34ae49bd04ebad0c85caa0474bad41dp20@ADARB2