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UBERON:0010912

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Name:subdivision of skeleton
Namespace:FANTOM
Definition:"Anatomical cluster consisting of the skeletal elements (i.e. bone elements, cartilage elements, cartilage condensations) that are part of an individual subdivision of the organism. Excludes joints." [UBERON:cjm, UBERONREF:0000003]
Xrefs:
links:

FMA:23879
SCTID:129140006

VSAO:0000042
Synonyms: "skeletal subdivision" EXACT [VSAO:0000042]
"subdivision of skeleton (in vivo)" RELATED [FMA:23879]
Comments:AO notes: VSAO def logically wrong

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0011216(organ system subdivision)
part_of:UBERON:0000075(subdivision of skeletal system),UBERON:0004288(skeleton)



Children

is a:UBERON:0001708 (jaw skeleton),UBERON:0002091 (appendicular skeleton),UBERON:0003277 (skeleton of upper jaw),UBERON:0010364 (dermal skeleton),UBERON:0010712 (limb skeleton subdivision),UBERON:0011582 (paired limb/fin skeleton),UBERON:0012476 (skeleton of pelvic complex)
disjoint from:UBERON:0002529 (limb segment),UBERON:0010538 (paired limb/fin segment)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
  • 1350-25C3 (bone (os femoris), neonate N20)
  • 1525-43A6 (bone (os femoris), neonate N16)
  • 1985-43F5 (bone (os femoris), neonate N02)
  • 56-12G2 (bone (os femoris), adult)

Mouse (Mus musculus)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
  • 1350-25C3 (bone (os femoris), neonate N20)
  • 1525-43A6 (bone (os femoris), neonate N16)
  • 1985-43F5 (bone (os femoris), neonate N02)
  • 56-12G2 (bone (os femoris), adult)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010912 (subdivision of skeleton), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_e65afa4e69e81d10b3d1b435bf09ce7cp14@C17orf67
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_e65afa4e69e81d10b3d1b435bf09ce7cp14@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_b5fb1371b858e40ca80326f6756e8babp@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_b5fb1371b858e40ca80326f6756e8babp12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_b5fb1371b858e40ca80326f6756e8babp12@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_b5fb1371b858e40ca80326f6756e8babp11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_b5fb1371b858e40ca80326f6756e8babp11@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_b5fb1371b858e40ca80326f6756e8babp@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_b5fb1371b858e40ca80326f6756e8babp13@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_b5fb1371b858e40ca80326f6756e8babp13@C17orf67
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_d6b7e48d65de67b857ad275cd4d5a90ep14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_d6b7e48d65de67b857ad275cd4d5a90ep@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_d6b7e48d65de67b857ad275cd4d5a90ep14@MAB21L2
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_d6b7e48d65de67b857ad275cd4d5a90ep@chr5:75912402..75912418, -
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_8282dc2f06076968cef0d41cb79118d9p@chr4:151505582..151505614, +
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_8282dc2f06076968cef0d41cb79118d9p@chr4:151505582..151505614, +
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_cf5ecc009d8fa308bfb7fdd7a6066408p17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_cf5ecc009d8fa308bfb7fdd7a6066408p17@RSRC1
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_cf5ecc009d8fa308bfb7fdd7a6066408+, p@chr8:57354278..57354286
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_cf5ecc009d8fa308bfb7fdd7a6066408p9@C17orf67
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_cf5ecc009d8fa308bfb7fdd7a6066408p@chr8:57354278..57354286, +
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_cf5ecc009d8fa308bfb7fdd7a6066408p9@C17orf67
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_1669097a203b3c4c7eb83afd5c9447d9p@chr8:57802672..57802682, -
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_1669097a203b3c4c7eb83afd5c9447d9p@chr8:57802672..57802682, -
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_64ae8e5826146c33d082c753768dbe3bp7@ALX1
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_64ae8e5826146c33d082c753768dbe3bp1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_64ae8e5826146c33d082c753768dbe3bp@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_64ae8e5826146c33d082c753768dbe3bp@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_64ae8e5826146c33d082c753768dbe3bp1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_64ae8e5826146c33d082c753768dbe3bp7@ALX1
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_9ad92169fd82d05b3954f3bc6b09098fp23@FLT1
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_9ad92169fd82d05b3954f3bc6b09098fp23@FLT1
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_9ad92169fd82d05b3954f3bc6b09098fp@chr2:33519090..33519092, +
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_9ad92169fd82d05b3954f3bc6b09098fp@chr2:33519090..33519092, +
3.4e-49FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_1bed47d0ec30050f811e40e463f20adbp26@Myo18a
3.4e-49FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_1bed47d0ec30050f811e40e463f20adbp26@Myo18a
4.96e-49FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_272bea4f947ac2c52d43ec6c6f50e806p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_272bea4f947ac2c52d43ec6c6f50e806p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_272bea4f947ac2c52d43ec6c6f50e806p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_272bea4f947ac2c52d43ec6c6f50e806p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_272bea4f947ac2c52d43ec6c6f50e806p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_272bea4f947ac2c52d43ec6c6f50e806p@chr2:32482372..32482381, +
3.15e-44FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_ca135afc4680b3f0bf21e567d1daefbcp@chr6:51525810..51525817, +
3.15e-44FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_ca135afc4680b3f0bf21e567d1daefbcp@chr6:51525810..51525817, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_acb75afce4a90d297e0a7085c1613631p@chr8:57353666..57353675, -
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_acb75afce4a90d297e0a7085c1613631p@chr8:57353779..57353790, -
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_acb75afce4a90d297e0a7085c1613631p@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_acb75afce4a90d297e0a7085c1613631p@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_acb75afce4a90d297e0a7085c1613631-, p@chr8:57353779..57353790
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_acb75afce4a90d297e0a7085c1613631p@chr8:57353666..57353675, -
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_2cf6a12954f7353e314f26ca3277bb1dp2@TAS1R1
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_2cf6a12954f7353e314f26ca3277bb1dp2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_2cf6a12954f7353e314f26ca3277bb1dp8@LHX8
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_2cf6a12954f7353e314f26ca3277bb1dp8@LHX8
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_2cf6a12954f7353e314f26ca3277bb1dp12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_2cf6a12954f7353e314f26ca3277bb1dp12@FAM65C
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_0e92d60c63e7c80b99c032d30cf880a4p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_0e92d60c63e7c80b99c032d30cf880a4p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_0e92d60c63e7c80b99c032d30cf880a4p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_0e92d60c63e7c80b99c032d30cf880a4p@chr16:67687543..67687559, -
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_4cf92d3eb870506b7e9f08e354698737p@chr9:125165007..125165016, +
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_4cf92d3eb870506b7e9f08e354698737p@chr6:46190219..46190230, -
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_4cf92d3eb870506b7e9f08e354698737p@chr9:125165007..125165016, +
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_4cf92d3eb870506b7e9f08e354698737p@chr6:46190219..46190230, -
9.78e-40FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_33c3385048cf118c0d648ae911d97deap@chr19:4876870..4876880, -
9.78e-40FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_33c3385048cf118c0d648ae911d97deap@chr19:4876870..4876880, -
1.15e-39FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_e9337534b889ef68b395634fc8a55c2bp@chr1:174140324..174140335, -
1.15e-39FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_e9337534b889ef68b395634fc8a55c2bp@chr6:4490674..4490679, +
1.15e-39FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_e9337534b889ef68b395634fc8a55c2bp@chr11:67063327..67063335, +
1.15e-39FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_e9337534b889ef68b395634fc8a55c2bp@chr1:174140324..174140335, -
1.15e-39FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_e9337534b889ef68b395634fc8a55c2bp@chr11:67063327..67063335, +
1.15e-39FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_e9337534b889ef68b395634fc8a55c2bp@chr16:24096441..24096449, +
1.15e-39FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_e9337534b889ef68b395634fc8a55c2b+, p@chr6:4490674..4490679
1.15e-39FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_e9337534b889ef68b395634fc8a55c2bp@chr16:24096441..24096449, +
1.55e-39FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_d4f366fc53dfb99cd9b6dfc374d69c41p@chr1:174143249..174143260, -
1.55e-39FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_d4f366fc53dfb99cd9b6dfc374d69c41p@chr1:174143249..174143260, -
3.03e-39FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_897037edf0d784d7d1d0ae11a70692bdp@chr6:51525869..51525891, +
3.03e-39FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_897037edf0d784d7d1d0ae11a70692bdp@chr6:51525869..51525891, +
9.31e-39FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_044e6d7050ee2805f20b8d87bdfa827dp3@Asb16
9.31e-39FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_044e6d7050ee2805f20b8d87bdfa827dp3@Asb16
2.41e-35FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_fc93a779d55ca5699127e920bdad43c5p@chr7:133604286..133604297, -
2.41e-35FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_fc93a779d55ca5699127e920bdad43c5p@chr7:133604286..133604297, -
2.95e-35FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_b080f9c477c4d6b5782bec3587ec80a2p5@Pla2g5
2.95e-35FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_b080f9c477c4d6b5782bec3587ec80a2p5@Pla2g5
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_2980b43b1d26238154ed90865e39dbddp4@CPZ
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_2980b43b1d26238154ed90865e39dbddp4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_2980b43b1d26238154ed90865e39dbddp@chr10:15760985..15760992, -
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_2980b43b1d26238154ed90865e39dbddp5@PENK
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_2980b43b1d26238154ed90865e39dbddp@chr10:15760985..15760992, -
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_2980b43b1d26238154ed90865e39dbddp5@PENK
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_7faa7adcef287dce5ad94534dc810b93p9@SIX1
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_7faa7adcef287dce5ad94534dc810b93p9@SIX1
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_0176910b868671e121828f2c60bd518bp@chr6:134327986..134327991, -
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_0176910b868671e121828f2c60bd518bp@chr6:134327986..134327991, -
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_62fd4e8a6e835696d1a0a7ef15d091d9-, p@chr8:57353676..57353688
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_62fd4e8a6e835696d1a0a7ef15d091d9p@chr13:58291223..58291226, +
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_62fd4e8a6e835696d1a0a7ef15d091d9p@chr8:57353676..57353688, -
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_62fd4e8a6e835696d1a0a7ef15d091d9p@chr13:58291223..58291226, +
9.53e-34FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_9137eb4b1a96f25435bac9bff1dcd16ap2@uc009mdq.1
9.53e-34FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_9137eb4b1a96f25435bac9bff1dcd16ap2@uc009mdq.1










Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical cluster consisting of the skeletal elements that are part of the skeleton.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.