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CL:0000051

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Name:common lymphoid progenitor
Namespace:FANTOM
Definition:"A oligopotent progenitor cell committed to the lymphoid lineage." [GOC:add, GOC:dsd, GOC:tfm, PMID:10407577, PMID:16551251]
Synonyms: "CLP" EXACT []
"committed lymphopoietic stem cell" RELATED []
"common lymphocyte precursor" EXACT []
"common lymphocyte progenitor" EXACT []
"common lymphoid precursor" EXACT []
"early lymphocyte progenitor" RELATED []
"ELP" RELATED []
"lymphoid stem cell" RELATED []
"lymphopoietic stem cell" RELATED []
Comments:CLP are CD7-positive, CD10-positive, CD19-negative, CD34-positive, CD45RA-positive, CD79a-negative, CD127-positive, AA4.1-positive, RAG-negative, Sca-1-low, sIgM-negative, sIgD-negative, TdT-negative, Vpre-B-negative, and pre-BCR-negative. Expression of transcription factors include E2A-positive, EBF-positive, Ikaros-negative, PU.1-negative, and Pax5-negative.
Alt_id: CL:0000044


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0002032(hematopoietic oligopotent progenitor cell)



Children


disjoint from:CL:0000049 (common myeloid progenitor)
develops from:CL:0000542 (lymphocyte),CL:0000825 (pro-NK cell),CL:0000826 (pro-B cell),CL:0000827 (pro-T cell)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.




Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000051 (common lymphoid progenitor), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
2.13e-82FFCP PHASE1:Hg19::chr5:150521260..150521277,-#_12273b98a1733528fe967a17c35b8d6ep5@ANXA6
2.13e-82FFCP PHASE2:Hg19::chr5:150521260..150521277,-#_12273b98a1733528fe967a17c35b8d6ep5@ANXA6
3.17e-82FFCP PHASE2:Hg19::chr11:67206142..67206156,-#_9871f788cee925c362976be782eccf93p@chr11:67206142..67206156, -
3.17e-82FFCP PHASE1:Hg19::chr11:67206142..67206156,-#_9871f788cee925c362976be782eccf93p@chr11:67206142..67206156, -
6.87e-78FFCP PHASE1:Hg19::chr12:9822355..9822366,+#_90c63f745b2fc35da8f8635a49c47e9cp3@CLEC2D
6.87e-78FFCP PHASE2:Hg19::chr12:9822355..9822366,+#_90c63f745b2fc35da8f8635a49c47e9cp3@CLEC2D
8.78e-77FFCP PHASE1:Hg19::chr9:35650572..35650659,-#_b1400c8440a631e060b0d4937fa83bbap2@SIT1
8.78e-77FFCP PHASE2:Hg19::chr9:35650572..35650659,-#_b1400c8440a631e060b0d4937fa83bbap2@SIT1
1.12e-76FFCP PHASE2:Hg19::chr9:140356580..140356585,+#_5b193074986188dfc21b599ca885e7bdp@chr9:140356580..140356585, +
1.12e-76FFCP PHASE1:Hg19::chr9:140356580..140356585,+#_5b193074986188dfc21b599ca885e7bdp@chr9:140356580..140356585, +
9.3e-76FFCP PHASE1:Hg19::chr17:37934188..37934202,-#_a42511396c462029edf5a3c3d03c2f00p8@IKZF3
9.3e-76FFCP PHASE2:Hg19::chr17:37934188..37934202,-#_a42511396c462029edf5a3c3d03c2f00p8@IKZF3
1.29e-75FFCP PHASE2:Hg19::chr11:118754537..118754552,+#_944a418b9ec8bfafd80274d37b90d60dp3@CXCR5
1.29e-75FFCP PHASE1:Hg19::chr11:118754537..118754552,+#_944a418b9ec8bfafd80274d37b90d60dp3@CXCR5
1.3e-75FFCP PHASE1:Hg19::chr17:38020481..38020506,-#_091cdf7e5aa9f32da0ef8c53cc906abdp7@IKZF3
1.3e-75FFCP PHASE2:Hg19::chr17:38020481..38020506,-#_091cdf7e5aa9f32da0ef8c53cc906abdp7@IKZF3
2.49e-75FFCP PHASE2:Hg19::chr1:207096529..207096554,-#_0651a8680660a94e0fca5d1bbb944c74p5@FAIM3
2.49e-75FFCP PHASE1:Hg19::chr1:207096529..207096554,-#_0651a8680660a94e0fca5d1bbb944c74p5@FAIM3
7.9e-73FFCP PHASE1:Hg19::chr1:27953007..27953025,-#_f6328af2e01596a86224dabd4894a19cp12@FGR
7.9e-73FFCP PHASE2:Hg19::chr1:27953007..27953025,-#_f6328af2e01596a86224dabd4894a19cp12@FGR
7.87e-72FFCP PHASE2:Hg19::chr6:31540403..31540430,-#_0d9a92e6ac4630421a2b3194c09f436ap1@LOC100287329
7.87e-72FFCP PHASE1:Hg19::chr6:31540403..31540430,-#_0d9a92e6ac4630421a2b3194c09f436ap1@LOC100287329
2.14e-71FFCP PHASE1:Hg19::chr14:20811696..20811707,+#_31d9387bfbe031ad80d3c91fbd6f63bfp4@PARP2
2.14e-71FFCP PHASE2:Hg19::chr14:20811696..20811707,+#_31d9387bfbe031ad80d3c91fbd6f63bfp4@PARP2
2.73e-71FFCP PHASE1:Hg19::chr17:38020607..38020621,-#_042476cde7ec12d7b07c68570e677bd0p9@IKZF3
2.73e-71FFCP PHASE2:Hg19::chr17:38020607..38020621,-#_042476cde7ec12d7b07c68570e677bd0p9@IKZF3
5.67e-71FFCP PHASE2:Hg19::chr8:71564073..71564104,+#_267ce9af9d0364bac16bb8830154c11bp@chr8:71564073..71564104, +
5.67e-71FFCP PHASE1:Hg19::chr8:71564073..71564104,+#_267ce9af9d0364bac16bb8830154c11bp@chr8:71564073..71564104, +
1.15e-70FFCP PHASE2:Hg19::chr11:64107589..64107604,-#_5f0895b225b7cc30ace8adf6e054be3bp@chr11:64107589..64107604, -
1.15e-70FFCP PHASE1:Hg19::chr11:64107589..64107604,-#_5f0895b225b7cc30ace8adf6e054be3bp@chr11:64107589..64107604, -
1.75e-70FFCP PHASE1:Hg19::chr17:37934204..37934241,-#_ea2bbd8217c0a5a85d68a2ce831ce734p3@IKZF3
1.75e-70FFCP PHASE2:Hg19::chr17:37934204..37934241,-#_ea2bbd8217c0a5a85d68a2ce831ce734p3@IKZF3
5.83e-70FFCP PHASE2:Hg19::chr3:107844539..107844555,-#_9176c5e37bfce914b95fd9f3d513ebbb-, p@chr3:107844539..107844555
5.83e-70FFCP PHASE1:Hg19::chr3:107844539..107844555,-#_9176c5e37bfce914b95fd9f3d513ebbbp@chr3:107844539..107844555, -
6.85e-70FFCP PHASE1:Hg19::chr14:23000807..23000874,+#_88cb65d9e8457c329d2e17ce1ff3798ap1@TRAJ12
6.85e-70FFCP PHASE2:Hg19::chr14:23000807..23000874,+#_88cb65d9e8457c329d2e17ce1ff3798ap1@TRAJ12
9.9e-70FFCP PHASE2:Hg19::chr11:111224819..111224845,+#_6be8f1895456268501e4991ebfbce540p2@CU689419
9.9e-70FFCP PHASE1:Hg19::chr11:111224819..111224845,+#_6be8f1895456268501e4991ebfbce540p2@CU689419
2.85e-69FFCP PHASE1:Hg19::chr17:38020557..38020572,-#_769368fcd1fa10c7346e16af4bdbc41fp4@IKZF3
2.85e-69FFCP PHASE2:Hg19::chr17:38020557..38020572,-#_769368fcd1fa10c7346e16af4bdbc41fp4@IKZF3
3.14e-69FFCP PHASE2:Hg19::chr5:150521234..150521251,-#_87bd3b67701db323c3737fee58a30b00p4@ANXA6
3.14e-69FFCP PHASE1:Hg19::chr5:150521234..150521251,-#_87bd3b67701db323c3737fee58a30b00p4@ANXA6
5.7e-69FFCP PHASE1:Hg19::chr19:39108644..39108658,-#_af6a9c24fafc7e4d4932f7b4ca8fe137p2@MAP4K1
5.7e-69FFCP PHASE2:Hg19::chr19:39108644..39108658,-#_af6a9c24fafc7e4d4932f7b4ca8fe137p2@MAP4K1
1.0e-68FFCP PHASE2:Hg19::chr17:38020516..38020544,-#_5e335da75e465498ff8b7e25ce40315dp5@IKZF3
1.0e-68FFCP PHASE1:Hg19::chr17:38020516..38020544,-#_5e335da75e465498ff8b7e25ce40315dp5@IKZF3
2.01e-68FFCP PHASE1:Hg19::chr1:207096678..207096699,+#_d5d6d87784db40944bb0bf989ed5fc46p@chr1:207096678..207096699, +
2.01e-68FFCP PHASE2:Hg19::chr1:207096678..207096699,+#_d5d6d87784db40944bb0bf989ed5fc46p@chr1:207096678..207096699, +
8.76e-68FFCP PHASE2:Hg19::chr7:50348268..50348366,+#_7928539f173b95102bafe18635529c83p4@IKZF1
8.76e-68FFCP PHASE1:Hg19::chr7:50348268..50348366,+#_7928539f173b95102bafe18635529c83p4@IKZF1
1.11e-67FFCP PHASE2:Hg19::chr11:67203630..67203643,-#_a684453f2a5e6fedd67af866e5fe764dp2@PTPRCAP
1.11e-67FFCP PHASE1:Hg19::chr11:67203630..67203643,-#_a684453f2a5e6fedd67af866e5fe764dp2@PTPRCAP
2.67e-67FFCP PHASE2:Mm9::chr4:32335511..32335532,+#_85dab843ac32c8dcd7cb1b008a7baae1p@chr4:32335511..32335532, +
2.67e-67FFCP PHASE1:Mm9::chr4:32335511..32335532,+#_85dab843ac32c8dcd7cb1b008a7baae1p@chr4:32335511..32335532, +
8.25e-67FFCP PHASE2:Hg19::chr13:30951074..30951122,-#_8396ae5124cea8d360d67b97f93d72c4p1@LINC00426
8.25e-67FFCP PHASE1:Hg19::chr13:30951074..30951122,-#_8396ae5124cea8d360d67b97f93d72c4p1@LINC00426
8.97e-67FFCP PHASE1:Hg19::chr18:60825437..60825471,-#_cd3f2f5f8bc8a668dc56b660e910137ap@chr18:60825437..60825471, -
8.97e-67FFCP PHASE2:Hg19::chr18:60825437..60825471,-#_cd3f2f5f8bc8a668dc56b660e910137ap@chr18:60825437..60825471, -
1.18e-66FFCP PHASE2:Hg19::chr8:28747682..28747705,-#_e22c587125abd623130560e8476a51e0p2@INTS9
1.18e-66FFCP PHASE1:Hg19::chr8:28747682..28747705,-#_e22c587125abd623130560e8476a51e0p2@INTS9
1.3e-66FFCP PHASE1:Mm9::chr4:32422919..32422935,+#_51446c338142d253b86571136ce0e5d8p@chr4:32422919..32422935, +
1.3e-66FFCP PHASE1:Mm9::chr5:123440486..123440504,-#_51446c338142d253b86571136ce0e5d8p@chr5:123440486..123440504, -
1.3e-66FFCP PHASE1:Mm9::chr5:123440767..123440778,+#_51446c338142d253b86571136ce0e5d8p@chr5:123440767..123440778, +
1.3e-66FFCP PHASE2:Mm9::chr7:132751140..132751183,+#_51446c338142d253b86571136ce0e5d8p@chr7:132751140..132751183, +
1.3e-66FFCP PHASE2:Mm9::chr4:32422919..32422935,+#_51446c338142d253b86571136ce0e5d8p@chr4:32422919..32422935, +
1.3e-66FFCP PHASE1:Mm9::chr6:99215016..99215036,+#_51446c338142d253b86571136ce0e5d8p@chr6:99215016..99215036, +
1.3e-66FFCP PHASE1:Mm9::chr7:132751140..132751183,+#_51446c338142d253b86571136ce0e5d8p@chr7:132751140..132751183, +
1.3e-66FFCP PHASE2:Mm9::chr6:99215016..99215036,+#_51446c338142d253b86571136ce0e5d8p@chr6:99215016..99215036, +
1.3e-66FFCP PHASE2:Mm9::chr5:123440486..123440504,-#_51446c338142d253b86571136ce0e5d8p@chr5:123440486..123440504, -
1.3e-66FFCP PHASE2:Mm9::chr5:123440767..123440778,+#_51446c338142d253b86571136ce0e5d8p@chr5:123440767..123440778, +
2.39e-66FFCP PHASE2:Hg19::chr17:37934280..37934299,-#_366835de3f40311d2cff838607da28cbp6@IKZF3
2.39e-66FFCP PHASE1:Hg19::chr17:37934280..37934299,-#_366835de3f40311d2cff838607da28cbp6@IKZF3
2.74e-66FFCP PHASE1:Hg19::chr22:24823517..24823546,+#_027d7ee4672a6615d6da9071f066fd54p5@ADORA2A
2.74e-66FFCP PHASE2:Hg19::chr22:24823517..24823546,+#_027d7ee4672a6615d6da9071f066fd54p5@ADORA2A
2.91e-66FFCP PHASE2:Hg19::chr11:64107610..64107648,-#_5682e34c1f3ec8dedac1767b065ad0e4p@chr11:64107610..64107648, -
2.91e-66FFCP PHASE1:Hg19::chr11:64107610..64107648,-#_5682e34c1f3ec8dedac1767b065ad0e4p@chr11:64107610..64107648, -
3.71e-66FFCP PHASE1:Hg19::chr9:37037005..37037011,+#_4b71f98f8da93b06edf5877a0ca24b22p@chr9:37037005..37037011, +
3.71e-66FFCP PHASE2:Hg19::chr9:37037005..37037011,+#_4b71f98f8da93b06edf5877a0ca24b22p@chr9:37037005..37037011, +
1.64e-65FFCP PHASE2:Hg19::chr4:40198602..40198614,+#_6423826807d77cefa2bd2ebc6f604063p3@RHOH
1.64e-65FFCP PHASE1:Hg19::chr4:40198602..40198614,+#_6423826807d77cefa2bd2ebc6f604063p3@RHOH
2.06e-65FFCP PHASE1:Hg19::chr6:159528034..159528048,+#_7d2066fa5fb8fa3e1108ba030f551e99p@chr6:159528034..159528048, +
2.06e-65FFCP PHASE2:Hg19::chr6:159528034..159528048,+#_7d2066fa5fb8fa3e1108ba030f551e99p@chr6:159528034..159528048, +
3.38e-65FFCP PHASE2:Hg19::chr22:50318813..50318835,+#_5140abb2db8e89c118574e5cbcae72c6p@chr22:50318813..50318835, +
3.38e-65FFCP PHASE1:Hg19::chr22:50318813..50318835,+#_5140abb2db8e89c118574e5cbcae72c6p@chr22:50318813..50318835, +
5.98e-65FFCP PHASE1:Hg19::chr17:43487780..43487792,-#_ffdde82e7eeb0c8b2ffba2fd2e6e582ep5@ARHGAP27
5.98e-65FFCP PHASE2:Hg19::chr17:43487780..43487792,-#_ffdde82e7eeb0c8b2ffba2fd2e6e582ep5@ARHGAP27
6.07e-65FFCP PHASE1:Hg19::chr12:111106975..111106991,-#_8a72cd43772b448f52044779ffe9df17p@chr12:111106975..111106991, -
6.07e-65FFCP PHASE2:Hg19::chr12:111106975..111106991,-#_8a72cd43772b448f52044779ffe9df17p@chr12:111106975..111106991, -
6.91e-65FFCP PHASE1:Hg19::chr12:9822334..9822351,+#_f3221fe7e2dd4cca0ff54be37a01fe65p2@CLEC2D
6.91e-65FFCP PHASE2:Hg19::chr12:9822334..9822351,+#_f3221fe7e2dd4cca0ff54be37a01fe65p2@CLEC2D
1.1e-64FFCP PHASE2:Hg19::chr17:37917880..37917904,-#_1f5beaa7f8024df1b93efaeb00f99611p1@AK128436
1.1e-64FFCP PHASE1:Hg19::chr17:37917880..37917904,-#_1f5beaa7f8024df1b93efaeb00f99611p1@AK128436
1.11e-64FFCP PHASE1:Hg19::chr17:66176843..66176848,+#_05222c1503d5fc04c990ca1e928ef751p@chr17:66176843..66176848, +
1.11e-64FFCP PHASE2:Hg19::chr17:66176843..66176848,+#_05222c1503d5fc04c990ca1e928ef751p@chr17:66176843..66176848, +
1.25e-64FFCP PHASE2:Hg19::chr9:98257510..98257517,-#_184d929e35b523ddb1bcc9a722d4fbfbp@chr9:98257510..98257517, -
1.25e-64FFCP PHASE1:Hg19::chr9:98257510..98257517,-#_184d929e35b523ddb1bcc9a722d4fbfbp@chr9:98257510..98257517, -
1.33e-64FFCP PHASE2:Hg19::chr1:207085241..207085281,-#_9993875c82a7170903151bcbce0ba36ep@chr1:207085241..207085281, -
1.33e-64FFCP PHASE1:Hg19::chr1:207085241..207085281,-#_9993875c82a7170903151bcbce0ba36ep@chr1:207085241..207085281, -
1.78e-64FFCP PHASE1:Hg19::chr9:35650900..35650967,-#_88d9a3497aa56c26583ea0b3ed5660f6p1@SIT1
1.78e-64FFCP PHASE2:Hg19::chr9:35650900..35650967,-#_88d9a3497aa56c26583ea0b3ed5660f6p1@SIT1