Personal tools

CL:0000055: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
Line 12: Line 12:
|is_obsolete=
|is_obsolete=
|located_in=
|located_in=
|name=blast cell;;non-terminally differentiated cell
|name=non-terminally differentiated cell
|namespace=cell;;efo
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=
|part_of=

Latest revision as of 16:28, 12 September 2014

Name:non-terminally differentiated cell
Namespace:FANTOM
Definition:"A precursor cell with a limited number of potential fates." [SANBI:mhl]
Xrefs:
links:

BTO:0000125

FMA:84782
Synonyms: "blast cell" EXACT []
Comments:define using PATO mulit-potent or oligopotent?


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000003(native cell)



Children


is a:CL:0000030 (glioblast),CL:0000031 (neuroblast),CL:0000058 (chondroblast),CL:0000062 (osteoblast),CL:0000541 (melanoblast),CL:0000680 (muscle precursor cell),CL:0007009 (prechondroblast),CL:0007010 (preosteoblast)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000055 (non-terminally differentiated cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results for this cluster