CL:0000057
From FANTOM5_SSTAR
Name: | fibroblast | ||
---|---|---|---|
Namespace: | FANTOM | ||
Definition: | "A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules. Flattened and irregular in outline with branching processes; appear fusiform or spindle-shaped." ISBN:0517223651, MESH:A.11.329.228 | ||
Xrefs: |
| ||
Comments: | These cells may be vimentin-positive, fibronectin-positive, fsp1-positive, MMP-1-positive, collagen I-positive, collagen III-positive, and alpha-SMA-negative. |
Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.
link to ontology dataset
data
Parents
is_a: | CL:0002320(connective tissue cell) |
---|---|
develops_from: | CL:0000134(mesenchymal cell) |
Children
is a: | CL:0000005 (fibroblast neural crest derived),CL:0000632 (hepatic stellate cell),CL:0002334 (preadipocyte),CL:0002548 (cardiac fibroblast),CL:0002549 (fibroblast of choroid plexus),CL:0002550 (fibroblast of the conjuctiva),CL:0002552 (fibroblast of gingiva),CL:0002553 (lung fibroblast),CL:0002554 (fibroblast of lymphatic vessel),CL:0002555 (fibroblast of mammary gland),CL:0002556 (fibroblast of periodontium),CL:0002557 (fibroblast of pulmonary artery),CL:0002558 (fibroblast of villous mesenchyme),CL:0002620 (skin fibroblast),CL:1000306 (fibroblast of tunica adventitia of artery) |
---|---|
derives from: | FF:0000057 (fibroblast sample),FF:0000107 (mouse embryonic fibroblast sample),FF:0100453 (fibroblast cell line sample) |
develops from: | CL:0000135 (fibrocyte) |
Ontology Tree: Loaded from BioPortal
FF samples
It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10446-106F5
- 10521-107E8
- 10522-107E9
- 10575-108B8
- 10576-108B9
- 10577-108C1
- 10578-108C2
- 10579-108C3
- 10580-108C4
- 10581-108C5
... further results Mouse (Mus musculus)
- 10446-106F5
- 10521-107E8
- 10522-107E9
- 10575-108B8
- 10576-108B9
- 10577-108C1
- 10578-108C2
- 10579-108C3
- 10580-108C4
- 10581-108C5
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000057 (fibroblast), sorted by p-values
Analyst: Hideya Kawaji
link to source dataset
human : data
mouse : data
P-value | FFCP | Short description |
---|---|---|
3.07e-86 | FFCP PHASE2:Mm9::chr2:156282978..156282979,+#_b3a45416708d7941f5fd9feda8878cf3 | p@chr2:156282978..156282979, + |
3.07e-86 | FFCP PHASE1:Mm9::chr4:50498164..50498166,+#_b3a45416708d7941f5fd9feda8878cf3 | p@chr4:50498164..50498166, + |
3.07e-86 | FFCP PHASE1:Mm9::chrX:45409736..45409738,+#_b3a45416708d7941f5fd9feda8878cf3 | p@chrX:45409736..45409738, + |
3.07e-86 | FFCP PHASE2:Mm9::chr4:50498164..50498166,+#_b3a45416708d7941f5fd9feda8878cf3 | p@chr4:50498164..50498166, + |
3.07e-86 | FFCP PHASE1:Mm9::chr4:61715146..61715151,-#_b3a45416708d7941f5fd9feda8878cf3 | p1@Mup20 |
3.07e-86 | FFCP PHASE2:Mm9::chr17:15914532..15914535,+#_b3a45416708d7941f5fd9feda8878cf3 | p@chr17:15914532..15914535, + |
3.07e-86 | FFCP PHASE1:Mm9::chr17:15914532..15914535,+#_b3a45416708d7941f5fd9feda8878cf3 | p@chr17:15914532..15914535, + |
3.07e-86 | FFCP PHASE2:Mm9::chr4:61715146..61715151,-#_b3a45416708d7941f5fd9feda8878cf3 | p1@Mup20 |
3.07e-86 | FFCP PHASE1:Mm9::chr2:156282978..156282979,+#_b3a45416708d7941f5fd9feda8878cf3 | p@chr2:156282978..156282979, + |
3.07e-86 | FFCP PHASE2:Mm9::chr10:94173889..94173890,-#_b3a45416708d7941f5fd9feda8878cf3 | p@chr10:94173889..94173890, - |
3.07e-86 | FFCP PHASE2:Mm9::chrX:45409736..45409738,+#_b3a45416708d7941f5fd9feda8878cf3 | p@chrX:45409736..45409738, + |
3.07e-86 | FFCP PHASE1:Mm9::chr10:94173889..94173890,-#_b3a45416708d7941f5fd9feda8878cf3 | p@chr10:94173889..94173890, - |
8.69e-51 | FFCP PHASE2:Hg19::chr14:92413727..92413738,-#_652b2b5d8eeceb5aa07b63a8f14b7540 | p7@FBLN5 |
8.69e-51 | FFCP PHASE1:Hg19::chr14:92413727..92413738,-#_652b2b5d8eeceb5aa07b63a8f14b7540 | p7@FBLN5 |
4.89e-45 | FFCP PHASE2:Hg19::chr1:161167199..161167216,+#_2f5eb83338e022f6601eab4dc43b5c2b | p2@NDUFS2 |
4.89e-45 | FFCP PHASE1:Hg19::chr1:161167199..161167216,+#_2f5eb83338e022f6601eab4dc43b5c2b | p2@NDUFS2 |
8.65e-45 | FFCP PHASE2:Hg19::chr15:80842610..80842647,-#_6316da597d2c1f5fb15d60f3b7f2a43a | p@chr15:80842610..80842647, - |
8.65e-45 | FFCP PHASE1:Hg19::chr15:80842610..80842647,-#_6316da597d2c1f5fb15d60f3b7f2a43a | p@chr15:80842610..80842647, - |
8.96e-45 | FFCP PHASE2:Hg19::chr1:240408577..240408596,+#_6f500911c77d07461f3034c8ac5aafc3 | p4@FMN2 |
8.96e-45 | FFCP PHASE1:Hg19::chr1:240408577..240408596,+#_6f500911c77d07461f3034c8ac5aafc3 | p4@FMN2 |
4.22e-44 | FFCP PHASE1:Hg19::chr6:148593425..148593498,+#_9d2ffcdd1a3e9ec1ad43bfc0ff70c447 | p2@SASH1 |
4.22e-44 | FFCP PHASE2:Hg19::chr6:148593425..148593498,+#_9d2ffcdd1a3e9ec1ad43bfc0ff70c447 | p2@SASH1 |
7.47e-44 | FFCP PHASE1:Mm9::chr2:35991779..35991800,-#_4b9eb53154bfec94f8733d365a8d12a9 | p7@Rbm18 |
7.47e-44 | FFCP PHASE2:Mm9::chrX:166354085..166354088,+#_4b9eb53154bfec94f8733d365a8d12a9 | p@chrX:166354085..166354088, + |
7.47e-44 | FFCP PHASE1:Mm9::chr3:127483562..127483571,+#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr3:127483562..127483571, + |
7.47e-44 | FFCP PHASE2:Mm9::chr18:38702532..38702560,+#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr18:38702532..38702560, + |
7.47e-44 | FFCP PHASE1:Mm9::chr8:42092122..42092137,-#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr8:42092122..42092137, - |
7.47e-44 | FFCP PHASE1:Mm9::chr6:31268117..31268151,-#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr6:31268117..31268151, - |
7.47e-44 | FFCP PHASE1:Mm9::chr11:48686060..48686062,+#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr11:48686060..48686062, + |
7.47e-44 | FFCP PHASE1:Mm9::chr7:111614187..111614200,+#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr7:111614187..111614200, + |
7.47e-44 | FFCP PHASE1:Mm9::chr19:39390004..39390011,+#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr19:39390004..39390011, + |
7.47e-44 | FFCP PHASE2:Mm9::chr7:111614187..111614200,+#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr7:111614187..111614200, + |
7.47e-44 | FFCP PHASE2:Mm9::chr8:42092122..42092137,-#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr8:42092122..42092137, - |
7.47e-44 | FFCP PHASE2:Mm9::chr11:48686060..48686062,+#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr11:48686060..48686062, + |
7.47e-44 | FFCP PHASE1:Mm9::chrX:166354085..166354088,+#_4b9eb53154bfec94f8733d365a8d12a9 | p@chrX:166354085..166354088, + |
7.47e-44 | FFCP PHASE2:Mm9::chr7:129965112..129965151,+#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr7:129965112..129965151, + |
7.47e-44 | FFCP PHASE1:Mm9::chr7:129965112..129965151,+#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr7:129965112..129965151, + |
7.47e-44 | FFCP PHASE2:Mm9::chr6:31268117..31268151,-#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr6:31268117..31268151, - |
7.47e-44 | FFCP PHASE2:Mm9::chr3:127483562..127483571,+#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr3:127483562..127483571, + |
7.47e-44 | FFCP PHASE1:Mm9::chr18:38702532..38702560,+#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr18:38702532..38702560, + |
7.47e-44 | FFCP PHASE1:Mm9::chr5:114824802..114824807,+#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr5:114824802..114824807, + |
7.47e-44 | FFCP PHASE2:Mm9::chr2:35991779..35991800,-#_4b9eb53154bfec94f8733d365a8d12a9 | p7@Rbm18 |
7.47e-44 | FFCP PHASE2:Mm9::chr19:39390004..39390011,+#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr19:39390004..39390011, + |
7.47e-44 | FFCP PHASE2:Mm9::chr5:114824802..114824807,+#_4b9eb53154bfec94f8733d365a8d12a9 | p@chr5:114824802..114824807, + |
2.51e-41 | FFCP PHASE1:Hg19::chr15:33180498..33180522,-#_223331b813e745267822e9a9d8348dc0 | p4@FMN1 |
2.51e-41 | FFCP PHASE2:Hg19::chr15:33180498..33180522,-#_223331b813e745267822e9a9d8348dc0 | p4@FMN1 |
7.15e-41 | FFCP PHASE2:Hg19::chr14:92413677..92413688,-#_bfa6fb5186e986a4156db62616986005 | p12@FBLN5 |
7.15e-41 | FFCP PHASE1:Hg19::chr14:92413677..92413688,-#_bfa6fb5186e986a4156db62616986005 | p12@FBLN5 |
8.81e-41 | FFCP PHASE2:Hg19::chr1:215179028..215179060,+#_31f0fa2f6fe51571be4070c31c781a7d | p9@KCNK2 |
8.81e-41 | FFCP PHASE1:Hg19::chr1:215179028..215179060,+#_31f0fa2f6fe51571be4070c31c781a7d | p9@KCNK2 |
3.67e-40 | FFCP PHASE2:Hg19::chr1:215178636..215178662,+#_9283ec5782d941e7579bf126f7d62d3e | p5@KCNK2 |
3.67e-40 | FFCP PHASE1:Hg19::chr1:215178636..215178662,+#_9283ec5782d941e7579bf126f7d62d3e | p5@KCNK2 |
4.28e-38 | FFCP PHASE1:Hg19::chr19:10928326..10928342,-#_f6e700b9aee4b1563bdd0fe0360c6ac8 | p1@MIR199A1 |
4.28e-38 | FFCP PHASE2:Hg19::chr19:10928326..10928342,-#_f6e700b9aee4b1563bdd0fe0360c6ac8 | p1@MIR199A1 |
6.13e-38 | FFCP PHASE1:Hg19::chr18:52969844..52969895,-#_5ce9506676de1d63c543c4032228d6d6 | p27@TCF4 |
6.13e-38 | FFCP PHASE2:Hg19::chr18:52969844..52969895,-#_5ce9506676de1d63c543c4032228d6d6 | p27@TCF4 |
1.61e-37 | FFCP PHASE1:Hg19::chr15:81201549..81201567,+#_50583cd4c438ca9abe78181fe26a438f | p2@KIAA1199 |
1.61e-37 | FFCP PHASE2:Hg19::chr15:81201549..81201567,+#_50583cd4c438ca9abe78181fe26a438f | p2@KIAA1199 |
2.86e-37 | FFCP PHASE1:Hg19::chr12:78334695..78334719,+#_c4e272da707ff320324de8bf7bb90388 | p@chr12:78334695..78334719, + |
2.86e-37 | FFCP PHASE2:Hg19::chr12:78334695..78334719,+#_c4e272da707ff320324de8bf7bb90388 | p@chr12:78334695..78334719, + |
4.22e-37 | FFCP PHASE2:Hg19::chr13:45289884..45289918,-#_6d5f155b5b500bb3b2168c4a42520658 | p@chr13:45289884..45289918, - |
4.22e-37 | FFCP PHASE1:Hg19::chr13:45289884..45289918,-#_6d5f155b5b500bb3b2168c4a42520658 | p@chr13:45289884..45289918, - |
6.18e-37 | FFCP PHASE2:Hg19::chr2:239756536..239756564,-#_45acdc479bc4426efea8a871454678ef | p1@BC143627 |
6.18e-37 | FFCP PHASE1:Hg19::chr2:239756536..239756564,-#_45acdc479bc4426efea8a871454678ef | p1@BC143627 |
6.63e-37 | FFCP PHASE2:Hg19::chr1:215178944..215178967,+#_674e775e220d0a8c4de58f42516654d7 | p11@KCNK2 |
6.63e-37 | FFCP PHASE1:Hg19::chr1:215178944..215178967,+#_674e775e220d0a8c4de58f42516654d7 | p11@KCNK2 |
6.76e-37 | FFCP PHASE2:Hg19::chr14:92413764..92413794,-#_76a3e271fc520aa8c9a22ea0cb99c519 | p2@FBLN5 |
6.76e-37 | FFCP PHASE1:Hg19::chr14:92413764..92413794,-#_76a3e271fc520aa8c9a22ea0cb99c519 | p2@FBLN5 |
1.13e-36 | FFCP PHASE2:Hg19::chr12:108991778..108991800,-#_31f1533ce9eaeed933486287845d2b19 | p2@TMEM119 |
1.13e-36 | FFCP PHASE1:Hg19::chr12:108991778..108991800,-#_31f1533ce9eaeed933486287845d2b19 | p2@TMEM119 |
1.92e-36 | FFCP PHASE2:Hg19::chr6:52441791..52441804,-#_514bb67a6e856f84efa086406221fc02 | p3@TRAM2 |
1.92e-36 | FFCP PHASE1:Hg19::chr6:52441791..52441804,-#_514bb67a6e856f84efa086406221fc02 | p3@TRAM2 |
3.45e-36 | FFCP PHASE2:Hg19::chr6:52441770..52441784,-#_1b8a4a599ed128c36fe0d6cae49ef512 | p2@TRAM2 |
3.45e-36 | FFCP PHASE1:Hg19::chr6:52441770..52441784,-#_1b8a4a599ed128c36fe0d6cae49ef512 | p2@TRAM2 |
4.74e-36 | FFCP PHASE2:Hg19::chr2:238322983..238323006,-#_3a32d70f20211eb08b0a7d38d336fc29 | p4@COL6A3 |
4.74e-36 | FFCP PHASE1:Hg19::chr2:238322983..238323006,-#_3a32d70f20211eb08b0a7d38d336fc29 | p4@COL6A3 |
5.54e-36 | FFCP PHASE2:Hg19::chr21:47518695..47518709,+#_d530f61b9a748918517003c9480626ba | p6@COL6A2 |
5.54e-36 | FFCP PHASE1:Hg19::chr21:47518695..47518709,+#_d530f61b9a748918517003c9480626ba | p6@COL6A2 |
1.05e-35 | FFCP PHASE2:Hg19::chr19:50031567..50031632,+#_125dc473df089cf4efe37ca0de76efa8 | p2@RCN3 |
1.05e-35 | FFCP PHASE1:Hg19::chr19:50031567..50031632,+#_125dc473df089cf4efe37ca0de76efa8 | p2@RCN3 |
2.16e-35 | FFCP PHASE2:Hg19::chr15:39410918..39410942,-#_b7861d091c45516728a2d7ae943b212a | p1@ENST00000560197 |
2.16e-35 | FFCP PHASE1:Hg19::chr15:39410918..39410942,-#_b7861d091c45516728a2d7ae943b212a | p1@ENST00000560197 |
2.63e-35 | FFCP PHASE2:Hg19::chr1:198636258..198636278,-#_914826195842a37f1825d32f0cc6639d | p1@ENST00000413577 |
2.63e-35 | FFCP PHASE1:Hg19::chr1:198636258..198636278,-#_914826195842a37f1825d32f0cc6639d | p1@ENST00000413577 |
3.83e-35 | FFCP PHASE2:Hg19::chr2:239756739..239756755,+#_de1acb1908db33af4757fb4c84aee10c | p2@TWIST2 |
3.83e-35 | FFCP PHASE1:Hg19::chr2:239756739..239756755,+#_de1acb1908db33af4757fb4c84aee10c | p2@TWIST2 |
6.05e-35 | FFCP PHASE1:Hg19::chr14:92413748..92413762,-#_3cf355da3268a924da3f621073a47d6a | p1@FBLN5 |
6.05e-35 | FFCP PHASE2:Hg19::chr14:92413748..92413762,-#_3cf355da3268a924da3f621073a47d6a | p1@FBLN5 |
7.69e-35 | FFCP PHASE1:Hg19::chr7:135433488..135433499,-#_26f051acefa60761b55e866e39ab9808 | p2@FAM180A |
7.69e-35 | FFCP PHASE2:Hg19::chr7:135433488..135433499,-#_26f051acefa60761b55e866e39ab9808 | p2@FAM180A |
8.37e-35 | FFCP PHASE2:Hg19::chr2:238289803..238289845,-#_23a23247f02f5503ea6c21917ed87422 | p@chr2:238289803..238289845, - |
8.37e-35 | FFCP PHASE1:Hg19::chr2:238289803..238289845,-#_23a23247f02f5503ea6c21917ed87422 | p@chr2:238289803..238289845, - |
1.04e-34 | FFCP PHASE2:Hg19::chr9:132461010..132461045,+#_2e24cf9d35dfe8c7fcab876885a1abe1 | p@chr9:132461010..132461045, + |
1.04e-34 | FFCP PHASE1:Hg19::chr9:132461010..132461045,+#_2e24cf9d35dfe8c7fcab876885a1abe1 | p@chr9:132461010..132461045, + |
1.22e-34 | FFCP PHASE1:Hg19::chr11:35547572..35547588,-#_456bb89cc8a0ecb1813d433e6a85f10e | p3@PAMR1 |
1.22e-34 | FFCP PHASE2:Hg19::chr11:35547572..35547588,-#_456bb89cc8a0ecb1813d433e6a85f10e | p3@PAMR1 |
1.75e-34 | FFCP PHASE1:Hg19::chr17:78808278..78808309,-#_8983870ba71748727843959ecc883884 | p@chr17:78808278..78808309, - |
1.75e-34 | FFCP PHASE2:Hg19::chr17:78808278..78808309,-#_8983870ba71748727843959ecc883884 | p@chr17:78808278..78808309, - |
1.82e-34 | FFCP PHASE1:Hg19::chr11:66082890..66082979,+#_61a74ab8cb62cb6c2739c8fd01724bba | p@chr11:66082890..66082979, + |
1.82e-34 | FFCP PHASE2:Hg19::chr11:66082890..66082979,+#_61a74ab8cb62cb6c2739c8fd01724bba | p@chr11:66082890..66082979, + |