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CL:0000188

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Name:cell of skeletal muscle
Namespace:FANTOM
Definition:"A somatic cell located in skeletal muscle." [GOC:tfm]
Xrefs:
links:

BTO:0004392

FMA:9727


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0002371(somatic cell)
part_of:UBERON:0001134(skeletal muscle tissue)



Children


is a:CL:0000355 (multi-potent skeletal muscle stem cell),CL:0000594 (skeletal muscle satellite cell)
derives from:FF:0000162 (human skeletal muscle cell sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

  • 11240-116D7 (Skeletal Muscle Satellite Cells, donor1)
  • 11281-116I3 (Skeletal Muscle Cells, donor1)
  • 11282-116I4 (Skeletal muscle cells differentiated into Myotubes - multinucleated, donor1)
  • 11321-117D7 (Skeletal Muscle Satellite Cells, donor2)
  • 11358-117H8 (Skeletal Muscle Cells, donor2)
  • 11359-117H9 (Skeletal muscle cells differentiated into Myotubes - multinucleated, donor2)
  • 11397-118D2 (Skeletal Muscle Satellite Cells, donor3)
  • 11430-118G8 (Skeletal Muscle Cells, donor3)
  • 11431-118G9 (Skeletal muscle cells differentiated into Myotubes - multinucleated, donor3)
  • 11451-119A2 (Skeletal Muscle Cells, donor4)

... further results Mouse (Mus musculus)

  • 11240-116D7 (Skeletal Muscle Satellite Cells, donor1)
  • 11281-116I3 (Skeletal Muscle Cells, donor1)
  • 11282-116I4 (Skeletal muscle cells differentiated into Myotubes - multinucleated, donor1)
  • 11321-117D7 (Skeletal Muscle Satellite Cells, donor2)
  • 11358-117H8 (Skeletal Muscle Cells, donor2)
  • 11359-117H9 (Skeletal muscle cells differentiated into Myotubes - multinucleated, donor2)
  • 11397-118D2 (Skeletal Muscle Satellite Cells, donor3)
  • 11430-118G8 (Skeletal Muscle Cells, donor3)
  • 11431-118G9 (Skeletal muscle cells differentiated into Myotubes - multinucleated, donor3)
  • 11451-119A2 (Skeletal Muscle Cells, donor4)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000188 (cell of skeletal muscle), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
7.88e-112FFCP PHASE2:Hg19::chr11:85090268..85090294,-#_ed3eafdbb00a753c922e48bdbd8e7943p@chr11:85090268..85090294, -
7.88e-112FFCP PHASE1:Hg19::chr11:85090268..85090294,-#_ed3eafdbb00a753c922e48bdbd8e7943p@chr11:85090268..85090294, -
9.06e-79FFCP PHASE1:Hg19::chr7:81337867..81337871,+#_68aee55847fc2b7b1004b27cb1a5b4e9p@chr7:81337867..81337871, +
9.06e-79FFCP PHASE2:Hg19::chr7:81337867..81337871,+#_68aee55847fc2b7b1004b27cb1a5b4e9+, p@chr7:81337867..81337871
6.54e-72FFCP PHASE1:Hg19::chr2:208104461..208104478,+#_16009efcac4d236ba4b6c8901d6275a4p3@ENST00000430494
6.54e-72FFCP PHASE2:Hg19::chr2:208104461..208104478,+#_16009efcac4d236ba4b6c8901d6275a4p3@ENST00000430494
2.3e-68FFCP PHASE2:Hg19::chr6:169588532..169588548,-#_ddad573b76550b7b8407bd05dc1a1dc5p@chr6:169588532..169588548, -
2.3e-68FFCP PHASE1:Hg19::chr6:169588532..169588548,-#_ddad573b76550b7b8407bd05dc1a1dc5p@chr6:169588532..169588548, -
8.22e-67FFCP PHASE1:Hg19::chr2:233404395..233404408,+#_003ee43a351e0171723cff2032bec07dp2@CHRNG
8.22e-67FFCP PHASE2:Hg19::chr2:233404395..233404408,+#_003ee43a351e0171723cff2032bec07dp2@CHRNG
9.36e-60FFCP PHASE2:Hg19::chr5:53776469..53776484,+#_5b5f8c6afc351e80250653029dd91665p@chr5:53776469..53776484, +
9.36e-60FFCP PHASE1:Hg19::chr5:53776469..53776484,+#_5b5f8c6afc351e80250653029dd91665p@chr5:53776469..53776484, +
1.0e-58FFCP PHASE2:Hg19::chr9:23769271..23769295,-#_950a973f8ae29905c4d696100102b297p@chr9:23769271..23769295, -
1.0e-58FFCP PHASE1:Hg19::chr9:23769271..23769295,-#_950a973f8ae29905c4d696100102b297p@chr9:23769271..23769295, -
1.17e-58FFCP PHASE1:Hg19::chr16:70732811..70732824,-#_ac066e25ed3330fe9b699f80f957da5fp@chr16:70732811..70732824, -
1.17e-58FFCP PHASE2:Hg19::chr16:70732811..70732824,-#_ac066e25ed3330fe9b699f80f957da5fp@chr16:70732811..70732824, -
5.23e-58FFCP PHASE1:Hg19::chr16:89238212..89238224,+#_8f13a5239fd7b8968cb0e35938c01b79p2@CDH15
5.23e-58FFCP PHASE2:Hg19::chr16:89238212..89238224,+#_8f13a5239fd7b8968cb0e35938c01b79p2@CDH15
6.02e-55FFCP PHASE1:Hg19::chr8:144874971..144874988,-#_d390e5c0ed2ff9b0ebcfcdc7f65c9acbp@chr8:144874971..144874988, -
6.02e-55FFCP PHASE2:Hg19::chr8:144874971..144874988,-#_d390e5c0ed2ff9b0ebcfcdc7f65c9acbp@chr8:144874971..144874988, -
1.18e-51FFCP PHASE2:Hg19::chr9:136390071..136390087,-#_b62cecf948382ac4e07fdfae40522dd7p1@TMEM8C
1.18e-51FFCP PHASE1:Hg19::chr9:136390071..136390087,-#_b62cecf948382ac4e07fdfae40522dd7p1@TMEM8C
2.83e-50FFCP PHASE2:Hg19::chr8:144875208..144875222,-#_0e6f2d71db548dc42268856385f26700p@chr8:144875208..144875222, -
2.83e-50FFCP PHASE1:Hg19::chr8:144875208..144875222,-#_0e6f2d71db548dc42268856385f26700p@chr8:144875208..144875222, -
9.35e-50FFCP PHASE1:Hg19::chr13:94958055..94958072,+#_36a51141737638c05e297a73051f687ep@chr13:94958055..94958072, +
9.35e-50FFCP PHASE2:Hg19::chr13:94958055..94958072,+#_36a51141737638c05e297a73051f687ep@chr13:94958055..94958072, +
9.86e-50FFCP PHASE1:Hg19::chr2:145161707..145161728,-#_0b391dad19421c8961f71edf3426a748p@chr2:145161707..145161728, -
9.86e-50FFCP PHASE2:Hg19::chr2:145161707..145161728,-#_0b391dad19421c8961f71edf3426a748p@chr2:145161707..145161728, -
1.03e-49FFCP PHASE1:Hg19::chr13:94958004..94958025,+#_a0c2530ca3b087d8fbcfeaadfb56b1dap@chr13:94958004..94958025, +
1.03e-49FFCP PHASE2:Hg19::chr13:94958004..94958025,+#_a0c2530ca3b087d8fbcfeaadfb56b1dap@chr13:94958004..94958025, +
3.29e-47FFCP PHASE1:Hg19::chr11:17741111..17741124,+#_8f4e66ebb80830865e83f6948dc814f6p1@MYOD1
3.29e-47FFCP PHASE2:Hg19::chr11:17741111..17741124,+#_8f4e66ebb80830865e83f6948dc814f6p1@MYOD1
1.14e-45FFCP PHASE2:Hg19::chr2:208104497..208104512,+#_54a8577da53262d88453874939daa281p2@ENST00000430494
1.14e-45FFCP PHASE1:Hg19::chr2:208104497..208104512,+#_54a8577da53262d88453874939daa281p2@ENST00000430494
9.75e-45FFCP PHASE2:Hg19::chr6:2783707..2783715,+#_05554db615eceaf002127053ce8f3a2bp2@U56249
9.75e-45FFCP PHASE1:Hg19::chrX:135827794..135827802,-#_05554db615eceaf002127053ce8f3a2bp@chrX:135827794..135827802, -
9.75e-45FFCP PHASE1:Hg19::chr11:17716498..17716504,+#_05554db615eceaf002127053ce8f3a2bp2@ENST00000524885
9.75e-45FFCP PHASE1:Hg19::chr9:14520447..14520460,-#_05554db615eceaf002127053ce8f3a2bp@chr9:14520447..14520460, -
9.75e-45FFCP PHASE2:Hg19::chr9:14520447..14520460,-#_05554db615eceaf002127053ce8f3a2bp@chr9:14520447..14520460, -
9.75e-45FFCP PHASE2:Hg19::chrX:135827794..135827802,-#_05554db615eceaf002127053ce8f3a2bp@chrX:135827794..135827802, -
9.75e-45FFCP PHASE2:Hg19::chr11:17716498..17716504,+#_05554db615eceaf002127053ce8f3a2bp2@ENST00000524885
9.75e-45FFCP PHASE1:Hg19::chr6:2783707..2783715,+#_05554db615eceaf002127053ce8f3a2bp2@U56249
9.75e-45FFCP PHASE1:Hg19::chr8:87774996..87775001,+#_05554db615eceaf002127053ce8f3a2bp@chr8:87774996..87775001, +
9.75e-45FFCP PHASE2:Hg19::chr13:106582200..106582203,+#_05554db615eceaf002127053ce8f3a2bp@chr13:106582200..106582203, +
9.75e-45FFCP PHASE2:Hg19::chr11:85090324..85090329,-#_05554db615eceaf002127053ce8f3a2bp@chr11:85090324..85090329, -
9.75e-45FFCP PHASE2:Hg19::chr6:2783611..2783617,+#_05554db615eceaf002127053ce8f3a2bp5@U56249
9.75e-45FFCP PHASE1:Hg19::chr13:106582200..106582203,+#_05554db615eceaf002127053ce8f3a2bp@chr13:106582200..106582203, +
9.75e-45FFCP PHASE1:Hg19::chr11:85090324..85090329,-#_05554db615eceaf002127053ce8f3a2bp@chr11:85090324..85090329, -
9.75e-45FFCP PHASE2:Hg19::chr8:87774996..87775001,+#_05554db615eceaf002127053ce8f3a2bp@chr8:87774996..87775001, +
9.75e-45FFCP PHASE1:Hg19::chr6:2783611..2783617,+#_05554db615eceaf002127053ce8f3a2bp5@U56249
2.84e-44FFCP PHASE1:Hg19::chr6:169588553..169588570,-#_f918afe45b073b55951c0e71ef5e6662p@chr6:169588553..169588570, -
2.84e-44FFCP PHASE2:Hg19::chr6:169588553..169588570,-#_f918afe45b073b55951c0e71ef5e6662p@chr6:169588553..169588570, -
3.55e-44FFCP PHASE2:Hg19::chr22:20103644..20103662,+#_4024dc1d03862784c8b53faef5907fb7p10@RANBP1
3.55e-44FFCP PHASE1:Hg19::chr22:20103644..20103662,+#_4024dc1d03862784c8b53faef5907fb7p10@RANBP1
4.57e-44FFCP PHASE2:Hg19::chr6:52001069..52001073,+#_e564fb63382632d165d5e3c9358b6cf6p@chr6:52001069..52001073, +
4.57e-44FFCP PHASE1:Hg19::chr6:52001069..52001073,+#_e564fb63382632d165d5e3c9358b6cf6p@chr6:52001069..52001073, +
1.7e-43FFCP PHASE2:Hg19::chr11:47470591..47470604,-#_3123da5e5023a7ae6c6864580f0ce6e5p4@RAPSN
1.7e-43FFCP PHASE1:Hg19::chr11:47470591..47470604,-#_3123da5e5023a7ae6c6864580f0ce6e5p4@RAPSN
1.79e-42FFCP PHASE1:Hg19::chr2:208175027..208175053,-#_68d8cfed49844ce59cabaa465321c26ep@chr2:208175027..208175053, -
1.79e-42FFCP PHASE2:Hg19::chr2:208175027..208175053,-#_68d8cfed49844ce59cabaa465321c26ep@chr2:208175027..208175053, -
3.01e-42FFCP PHASE1:Hg19::chr16:89238188..89238199,+#_46ddbe8bc5c05f52babf7a0e3075fdeap3@CDH15
3.01e-42FFCP PHASE2:Hg19::chr16:89238188..89238199,+#_46ddbe8bc5c05f52babf7a0e3075fdeap3@CDH15
1.19e-41FFCP PHASE1:Hg19::chr11:47470657..47470674,-#_3767892ab2ebc35cd197da33ea3d2049p2@RAPSN
1.19e-41FFCP PHASE2:Hg19::chr11:47470657..47470674,-#_3767892ab2ebc35cd197da33ea3d2049p2@RAPSN
1.31e-39FFCP PHASE1:Hg19::chr11:17741254..17741282,+#_abdad26377d27a83572a82605d25d088p2@MYOD1
1.31e-39FFCP PHASE2:Hg19::chr11:17741254..17741282,+#_abdad26377d27a83572a82605d25d088p2@MYOD1
1.57e-39FFCP PHASE1:Hg19::chr11:17741084..17741094,+#_66f5a2100eab5e2967c6faa5a8c55dbdp3@MYOD1
1.57e-39FFCP PHASE2:Hg19::chr11:17741084..17741094,+#_66f5a2100eab5e2967c6faa5a8c55dbdp3@MYOD1
1.8e-39FFCP PHASE1:Hg19::chr9:38414520..38414541,-#_b0df3466f4d50e61159531265e55e6c6p@chr9:38414520..38414541, -
1.8e-39FFCP PHASE2:Hg19::chr9:38414520..38414541,-#_b0df3466f4d50e61159531265e55e6c6p@chr9:38414520..38414541, -
2.42e-39FFCP PHASE2:Hg19::chr1:203052309..203052311,-#_fa5f14c45d4df404aa06d877eaf5291fp@chr1:203052309..203052311, -
2.42e-39FFCP PHASE1:Hg19::chr1:203052309..203052311,-#_fa5f14c45d4df404aa06d877eaf5291fp@chr1:203052309..203052311, -
2.64e-38FFCP PHASE1:Hg19::chr2:233404429..233404447,+#_a97f4bbf3b0b6e034f1d1cce3d690e24p1@CHRNG
2.64e-38FFCP PHASE2:Hg19::chr2:233404429..233404447,+#_a97f4bbf3b0b6e034f1d1cce3d690e24p1@CHRNG
6.67e-38FFCP PHASE1:Hg19::chr16:31225432..31225453,+#_54c37c5b57f025541991817d8a475509p2@TRIM72
6.67e-38FFCP PHASE2:Hg19::chr16:31225432..31225453,+#_54c37c5b57f025541991817d8a475509p2@TRIM72
4.17e-35FFCP PHASE1:Hg19::chr16:31225461..31225498,+#_44ca4222d79ec8e5f7b042264a9c0d80p1@TRIM72
4.17e-35FFCP PHASE2:Hg19::chr16:31225461..31225498,+#_44ca4222d79ec8e5f7b042264a9c0d80p1@TRIM72
4.98e-34FFCP PHASE1:Hg19::chr17:10560619..10560631,-#_6e8dba20ec332b7fb427468feb221795p1@MYH3
4.98e-34FFCP PHASE2:Hg19::chr17:10560619..10560631,-#_6e8dba20ec332b7fb427468feb221795p1@MYH3
2.61e-33FFCP PHASE2:Hg19::chr9:16871214..16871260,-#_14c61c8bc356cc6396603833be5733eep11@BNC2
2.61e-33FFCP PHASE1:Hg19::chr9:16871214..16871260,-#_14c61c8bc356cc6396603833be5733eep11@BNC2
1.21e-32FFCP PHASE1:Hg19::chr17:65040678..65040733,+#_7ddb3feecdfd04938f19ba89f6e2c767p1@CACNG1
1.21e-32FFCP PHASE2:Hg19::chr17:65040678..65040733,+#_7ddb3feecdfd04938f19ba89f6e2c767p1@CACNG1
1.66e-32FFCP PHASE1:Hg19::chr11:47470682..47470693,-#_2d297363b6c93f422ccc24cf6dfa00b8p1@RAPSN
1.66e-32FFCP PHASE2:Hg19::chr11:47470682..47470693,-#_2d297363b6c93f422ccc24cf6dfa00b8p1@RAPSN
2.7e-32FFCP PHASE1:Hg19::chr2:233390904..233390920,+#_6db89f5e5fa81562469a085f1386d84cp2@CHRND
2.7e-32FFCP PHASE2:Hg19::chr2:233390904..233390920,+#_6db89f5e5fa81562469a085f1386d84cp2@CHRND
2.66e-30FFCP PHASE1:Hg19::chr1:205210718..205210738,+#_e2f38a3b34c39fd67861e8c48c2ed180p@chr1:205210718..205210738, +
2.66e-30FFCP PHASE2:Hg19::chr1:205210718..205210738,+#_e2f38a3b34c39fd67861e8c48c2ed180p@chr1:205210718..205210738, +
3.09e-30FFCP PHASE2:Hg19::chr8:144799392..144799409,+#_6415f62d2c940a301dceb00cd4fef881p@chr8:144799392..144799409, +
3.09e-30FFCP PHASE1:Hg19::chr11:44884533..44884555,+#_6415f62d2c940a301dceb00cd4fef881p@chr11:44884533..44884555, +
3.09e-30FFCP PHASE1:Hg19::chr8:144799392..144799409,+#_6415f62d2c940a301dceb00cd4fef881p@chr8:144799392..144799409, +
3.09e-30FFCP PHASE2:Hg19::chr11:44884533..44884555,+#_6415f62d2c940a301dceb00cd4fef881p@chr11:44884533..44884555, +
3.59e-30FFCP PHASE2:Hg19::chr1:33338030..33338037,-#_187ebb976ab2f2f962656d48f8e9385cp9@FNDC5
3.59e-30FFCP PHASE1:Hg19::chr1:33338030..33338037,-#_187ebb976ab2f2f962656d48f8e9385cp9@FNDC5
1.15e-29FFCP PHASE2:Hg19::chr2:189387474..189387512,+#_46031c4726a33e2d413d2a57911162c7p11@GULP1
1.15e-29FFCP PHASE1:Hg19::chr2:189387474..189387512,+#_46031c4726a33e2d413d2a57911162c7p11@GULP1
1.62e-29FFCP PHASE1:Hg19::chr2:175629150..175629163,-#_ecaebb14d43df4022f8e2baac7438380p2@CHRNA1
1.62e-29FFCP PHASE2:Hg19::chr2:175629150..175629163,-#_ecaebb14d43df4022f8e2baac7438380p2@CHRNA1