Personal tools

CL:0000810

From FANTOM5_SSTAR

Jump to: navigation, search
Name:CD4-positive, alpha-beta thymocyte
Namespace:FANTOM
Definition:"An immature alpha-beta T cell that is located in the thymus and is CD4-positive and CD8-negative." [GO_REF:0000031, GOC:add, GOC:tfm, ISBN:0781735149]
Synonyms: "CD4-positive, alpha-beta immature T lymphocyte" EXACT []
"CD4-positive, alpha-beta immature T-cell" EXACT []
"CD4-positive, alpha-beta immature T-lymphocyte" EXACT []
"SP CD4 cell" EXACT []


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000790(immature alpha-beta T cell),CL:0000893(thymocyte)
develops_from:CL:0000809(double-positive, alpha-beta thymocyte)
part_of:UBERON:0002370(thymus)



Children


is a:CL:0002432 (CD24-positive, CD4 single-positive thymocyte),CL:0002433 (CD69-positive, CD4-positive single-positive thymocyte)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.




Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000810 (CD4-positive, alpha-beta thymocyte), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
2.55e-98FFCP PHASE2:Hg19::chr1:183622379..183622388,-#_e6f85c36541b061668c3fdcbabb284b0p4@APOBEC4
2.55e-98FFCP PHASE1:Hg19::chr1:183622379..183622388,-#_e6f85c36541b061668c3fdcbabb284b0p4@APOBEC4
2.55e-98FFCP PHASE2:Hg19::chr2:162762361..162762364,+#_e6f85c36541b061668c3fdcbabb284b0p@chr2:162762361..162762364, +
2.55e-98FFCP PHASE1:Hg19::chr2:162762361..162762364,+#_e6f85c36541b061668c3fdcbabb284b0p@chr2:162762361..162762364, +
1.36e-86FFCP PHASE1:Mm9::chr13:30878406..30878419,+#_b687a46575b2ca315637b12f90c23f1fp@chr13:30878406..30878419, +
1.36e-86FFCP PHASE2:Mm9::chr13:30878406..30878419,+#_b687a46575b2ca315637b12f90c23f1fp@chr13:30878406..30878419, +
1.36e-86FFCP PHASE2:Mm9::chrX:54476786..54476810,+#_b687a46575b2ca315637b12f90c23f1fp@chrX:54476786..54476810, +
1.36e-86FFCP PHASE1:Mm9::chrX:54476786..54476810,+#_b687a46575b2ca315637b12f90c23f1fp@chrX:54476786..54476810, +
1.01e-74FFCP PHASE2:Mm9::chr16:52032670..52032685,+#_b9858a2ee05c2761e2ed04cfd7d2109bp@chr16:52032670..52032685, +
1.01e-74FFCP PHASE1:Mm9::chr16:52032670..52032685,+#_b9858a2ee05c2761e2ed04cfd7d2109bp@chr16:52032670..52032685, +
2.41e-74FFCP PHASE1:Mm9::chr14:54795946..54795960,+#_f4fef961de26f46da0968fa1a4f72704p1@ENSMUST00000103701
2.41e-74FFCP PHASE2:Mm9::chr14:54795946..54795960,+#_f4fef961de26f46da0968fa1a4f72704p1@ENSMUST00000103701
2.41e-74FFCP PHASE1:Mm9::chr16:93777453..93777464,+#_f4fef961de26f46da0968fa1a4f72704p@chr16:93777453..93777464, +
2.41e-74FFCP PHASE2:Mm9::chr16:93777453..93777464,+#_f4fef961de26f46da0968fa1a4f72704p@chr16:93777453..93777464, +
2.48e-72FFCP PHASE2:Mm9::chr11:11587720..11587735,+#_ebc4759825edf021fc9767ce9ce29d68p@chr11:11587720..11587735, +
2.48e-72FFCP PHASE2:Mm9::chr14:54827490..54827502,+#_ebc4759825edf021fc9767ce9ce29d68p@chr14:54827490..54827502, +
2.48e-72FFCP PHASE2:Mm9::chr15:80403112..80403122,+#_ebc4759825edf021fc9767ce9ce29d68p12@Grap2
2.48e-72FFCP PHASE1:Mm9::chr11:11592840..11592849,+#_ebc4759825edf021fc9767ce9ce29d68p@chr11:11592840..11592849, +
2.48e-72FFCP PHASE2:Mm9::chr11:11592840..11592849,+#_ebc4759825edf021fc9767ce9ce29d68p@chr11:11592840..11592849, +
2.48e-72FFCP PHASE1:Mm9::chr15:80403112..80403122,+#_ebc4759825edf021fc9767ce9ce29d68p12@Grap2
2.48e-72FFCP PHASE1:Mm9::chr14:54827490..54827502,+#_ebc4759825edf021fc9767ce9ce29d68p@chr14:54827490..54827502, +
2.48e-72FFCP PHASE2:Mm9::chr13:30853488..30853499,+#_ebc4759825edf021fc9767ce9ce29d68p@chr13:30853488..30853499, +
2.48e-72FFCP PHASE2:Mm9::chr14:122362270..122362291,-#_ebc4759825edf021fc9767ce9ce29d68p@chr14:122362270..122362291, -
2.48e-72FFCP PHASE1:Mm9::chr11:11587720..11587735,+#_ebc4759825edf021fc9767ce9ce29d68p@chr11:11587720..11587735, +
2.48e-72FFCP PHASE1:Mm9::chr14:122362270..122362291,-#_ebc4759825edf021fc9767ce9ce29d68p@chr14:122362270..122362291, -
2.48e-72FFCP PHASE1:Mm9::chr13:30853488..30853499,+#_ebc4759825edf021fc9767ce9ce29d68p@chr13:30853488..30853499, +
2.39e-66FFCP PHASE2:Hg19::chr9:75772924..75772957,+#_cd066d58b9c9ab7e16d18182b578b7e8p17@ANXA1
2.39e-66FFCP PHASE1:Hg19::chr9:75772924..75772957,+#_cd066d58b9c9ab7e16d18182b578b7e8p17@ANXA1
4.66e-66FFCP PHASE1:Hg19::chr20:37493438..37493456,-#_e71795bfb8b50efa10ae5e7e132286bbp@chr20:37493438..37493456, -
4.66e-66FFCP PHASE2:Hg19::chr2:204816181..204816219,-#_e71795bfb8b50efa10ae5e7e132286bbp@chr2:204816181..204816219, -
4.66e-66FFCP PHASE1:Hg19::chr2:204816181..204816219,-#_e71795bfb8b50efa10ae5e7e132286bb-, p@chr2:204816181..204816219
4.66e-66FFCP PHASE2:Hg19::chr20:37493438..37493456,-#_e71795bfb8b50efa10ae5e7e132286bbp@chr20:37493438..37493456, -
4.66e-66FFCP PHASE2:Hg19::chr11:118209514..118209525,+#_e71795bfb8b50efa10ae5e7e132286bbp@chr11:118209514..118209525, +
4.66e-66FFCP PHASE1:Hg19::chr11:118209514..118209525,+#_e71795bfb8b50efa10ae5e7e132286bbp@chr11:118209514..118209525, +
1.05e-65FFCP PHASE1:Mm9::chr14:53242248..53242261,+#_7c191f68dc067e037a8e595809ba496ep@chr14:53242248..53242261, +
1.05e-65FFCP PHASE2:Mm9::chr14:53242248..53242261,+#_7c191f68dc067e037a8e595809ba496ep@chr14:53242248..53242261, +
1.74e-65FFCP PHASE2:Mm9::chr5:123439274..123439290,+#_7c9eaf443995582b946c00b9e9d6befbp4@ENSMUST00000148466, p4@uc008zmw.1
1.74e-65FFCP PHASE1:Mm9::chr5:123439274..123439290,+#_7c9eaf443995582b946c00b9e9d6befbp4@ENSMUST00000148466, p4@uc008zmw.1
2.25e-65FFCP PHASE1:Mm9::chr15:80403104..80403111,+#_2091faff8618b37a4e416079fc4004fdp10@Grap2
2.25e-65FFCP PHASE2:Mm9::chr15:80403104..80403111,+#_2091faff8618b37a4e416079fc4004fdp10@Grap2
2.25e-65FFCP PHASE2:Mm9::chr1:140069290..140069308,+#_2091faff8618b37a4e416079fc4004fdp@chr1:140069290..140069308, +
2.25e-65FFCP PHASE2:Mm9::chr5:123465978..123465989,-#_2091faff8618b37a4e416079fc4004fdp@chr5:123465978..123465989, -
2.25e-65FFCP PHASE1:Mm9::chr1:140069290..140069308,+#_2091faff8618b37a4e416079fc4004fd+, p@chr1:140069290..140069308
2.25e-65FFCP PHASE1:Mm9::chr5:123465978..123465989,-#_2091faff8618b37a4e416079fc4004fdp@chr5:123465978..123465989, -
2.9e-65FFCP PHASE1:Mm9::chr6:41504409..41504422,-#_9f0c637dd3167bc1ed9abb06caa499f8p@chr6:41504409..41504422, -
2.9e-65FFCP PHASE2:Mm9::chr11:46200242..46200255,+#_9f0c637dd3167bc1ed9abb06caa499f8p@chr11:46200242..46200255, +
2.9e-65FFCP PHASE1:Mm9::chr11:46200242..46200255,+#_9f0c637dd3167bc1ed9abb06caa499f8p@chr11:46200242..46200255, +
2.9e-65FFCP PHASE2:Mm9::chr6:41504409..41504422,-#_9f0c637dd3167bc1ed9abb06caa499f8p@chr6:41504409..41504422, -
2.9e-65FFCP PHASE1:Mm9::chr14:54817583..54817593,-#_9f0c637dd3167bc1ed9abb06caa499f8p@chr14:54817583..54817593, -
2.9e-65FFCP PHASE2:Mm9::chr14:54817583..54817593,-#_9f0c637dd3167bc1ed9abb06caa499f8p@chr14:54817583..54817593, -
3.74e-65FFCP PHASE1:Mm9::chr4:32328217..32328228,-#_684b283a1597519120bf1021f73e9ae1p@chr4:32328217..32328228, -
3.74e-65FFCP PHASE2:Mm9::chr4:32328217..32328228,-#_684b283a1597519120bf1021f73e9ae1p@chr4:32328217..32328228, -
6.21e-65FFCP PHASE2:Mm9::chr13:105412781..105412798,+#_007c62f50ee2c9535bb8f68128692734p@chr13:105412781..105412798, +
6.21e-65FFCP PHASE2:Mm9::chr5:123465955..123465966,-#_007c62f50ee2c9535bb8f68128692734p@chr5:123465955..123465966, -
6.21e-65FFCP PHASE1:Mm9::chr11:46200110..46200124,-#_007c62f50ee2c9535bb8f68128692734p@chr11:46200110..46200124, -
6.21e-65FFCP PHASE1:Mm9::chr13:105412781..105412798,+#_007c62f50ee2c9535bb8f68128692734p@chr13:105412781..105412798, +
6.21e-65FFCP PHASE2:Mm9::chr11:46200110..46200124,-#_007c62f50ee2c9535bb8f68128692734p@chr11:46200110..46200124, -
6.21e-65FFCP PHASE1:Mm9::chr5:123465955..123465966,-#_007c62f50ee2c9535bb8f68128692734p@chr5:123465955..123465966, -
1.0e-60FFCP PHASE1:Mm9::chr2:11097490..11097500,+#_57abd1cac5085f6b5ab14fbce739e805p@chr2:11097490..11097500, +
1.0e-60FFCP PHASE2:Mm9::chr2:11097490..11097500,+#_57abd1cac5085f6b5ab14fbce739e805p@chr2:11097490..11097500, +
1.33e-60FFCP PHASE1:Mm9::chr7:150943007..150943022,+#_e1f2c4ccaef2dde9467b22c45064a9a6p@chr7:150943007..150943022, +
1.33e-60FFCP PHASE1:Mm9::chr5:108160486..108160515,-#_e1f2c4ccaef2dde9467b22c45064a9a6p@chr5:108160486..108160515, -
1.33e-60FFCP PHASE1:Mm9::chr10:128157769..128157772,-#_e1f2c4ccaef2dde9467b22c45064a9a6p@chr10:128157769..128157772, -
1.33e-60FFCP PHASE2:Mm9::chr5:108160486..108160515,-#_e1f2c4ccaef2dde9467b22c45064a9a6p@chr5:108160486..108160515, -
1.33e-60FFCP PHASE1:Mm9::chr12:70398221..70398232,-#_e1f2c4ccaef2dde9467b22c45064a9a6p@chr12:70398221..70398232, -
1.33e-60FFCP PHASE2:Mm9::chr7:150943007..150943022,+#_e1f2c4ccaef2dde9467b22c45064a9a6p@chr7:150943007..150943022, +
1.33e-60FFCP PHASE2:Mm9::chr10:128157769..128157772,-#_e1f2c4ccaef2dde9467b22c45064a9a6p@chr10:128157769..128157772, -
1.33e-60FFCP PHASE2:Mm9::chr12:70398221..70398232,-#_e1f2c4ccaef2dde9467b22c45064a9a6p@chr12:70398221..70398232, -
1.77e-60FFCP PHASE1:Mm9::chr14:53414758..53414769,+#_bd41a7c3ebe1039ac23b7c2beed31bbep1@ENSMUST00000103582
1.77e-60FFCP PHASE2:Mm9::chr14:53414758..53414769,+#_bd41a7c3ebe1039ac23b7c2beed31bbep1@ENSMUST00000103582
2.34e-60FFCP PHASE1:Mm9::chr2:73290853..73290866,+#_3f67c5b30f1ef8557e7f914513918cc3p@chr2:73290853..73290866, +
2.34e-60FFCP PHASE2:Mm9::chr2:73290853..73290866,+#_3f67c5b30f1ef8557e7f914513918cc3p@chr2:73290853..73290866, +
4.1e-60FFCP PHASE2:Mm9::chr2:11181142..11181148,-#_ae3634702a12530638fda3aca89a5683p@chr2:11181142..11181148, -
4.1e-60FFCP PHASE1:Mm9::chr1:138476217..138476228,+#_ae3634702a12530638fda3aca89a5683p@chr1:138476217..138476228, +
4.1e-60FFCP PHASE1:Mm9::chr9:14708434..14708444,-#_ae3634702a12530638fda3aca89a5683p8@Folr4
4.1e-60FFCP PHASE2:Mm9::chr1:138476217..138476228,+#_ae3634702a12530638fda3aca89a5683p@chr1:138476217..138476228, +
4.1e-60FFCP PHASE1:Mm9::chr2:11181142..11181148,-#_ae3634702a12530638fda3aca89a5683p@chr2:11181142..11181148, -
4.1e-60FFCP PHASE2:Mm9::chr9:14708434..14708444,-#_ae3634702a12530638fda3aca89a5683p8@Folr4
6.9e-59FFCP PHASE2:Mm9::chrX:54477240..54477286,+#_dde3a39abc14d92ecacc62947495bc64p@chrX:54477240..54477286, +
6.9e-59FFCP PHASE1:Mm9::chr11:87558695..87558707,+#_dde3a39abc14d92ecacc62947495bc64p@chr11:87558695..87558707, +
6.9e-59FFCP PHASE2:Mm9::chr11:87558695..87558707,+#_dde3a39abc14d92ecacc62947495bc64p@chr11:87558695..87558707, +
6.9e-59FFCP PHASE1:Mm9::chrX:54465221..54465232,+#_dde3a39abc14d92ecacc62947495bc64p4@Cd40lg
6.9e-59FFCP PHASE1:Mm9::chrX:54477240..54477286,+#_dde3a39abc14d92ecacc62947495bc64p@chrX:54477240..54477286, +
6.9e-59FFCP PHASE2:Mm9::chrX:54465221..54465232,+#_dde3a39abc14d92ecacc62947495bc64p4@Cd40lg
1.09e-58FFCP PHASE2:Mm9::chr4:32339235..32339263,+#_ca73dd9acd0b91d891900b5a87aaa80cp@chr4:32339235..32339263, +
1.09e-58FFCP PHASE1:Mm9::chr4:32339235..32339263,+#_ca73dd9acd0b91d891900b5a87aaa80cp@chr4:32339235..32339263, +
1.71e-58FFCP PHASE1:Mm9::chr16:23175296..23175310,+#_e5765c6249e32bf5c9e390c5b32d6a54p3@uc007ytl.1
1.71e-58FFCP PHASE2:Mm9::chr19:10904395..10904400,-#_e5765c6249e32bf5c9e390c5b32d6a54p5@Cd6
1.71e-58FFCP PHASE2:Mm9::chr16:23175296..23175310,+#_e5765c6249e32bf5c9e390c5b32d6a54p3@uc007ytl.1
1.71e-58FFCP PHASE1:Mm9::chr19:10904395..10904400,-#_e5765c6249e32bf5c9e390c5b32d6a54p5@Cd6
2.15e-58FFCP PHASE1:Mm9::chr14:54831123..54831141,+#_504285c42e9fea16c1ca8b73d243196fp1@ENSMUST00000103733
2.15e-58FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_504285c42e9fea16c1ca8b73d243196fp1@ENSMUST00000103733
2.69e-58FFCP PHASE1:Mm9::chr4:151490126..151490137,+#_c562dd4d4e7461a83945976691041d64p3@Tnfrsf25
2.69e-58FFCP PHASE2:Mm9::chr4:32339511..32339518,+#_c562dd4d4e7461a83945976691041d64p@chr4:32339511..32339518, +
2.69e-58FFCP PHASE2:Mm9::chr4:151490126..151490137,+#_c562dd4d4e7461a83945976691041d64p3@Tnfrsf25
2.69e-58FFCP PHASE1:Mm9::chr4:32339511..32339518,+#_c562dd4d4e7461a83945976691041d64p@chr4:32339511..32339518, +
3.38e-58FFCP PHASE2:Mm9::chr6:48656532..48656548,+#_d226a1fbdb8c8bdb90deb2a759dfa368p@chr6:48656532..48656548, +
3.38e-58FFCP PHASE1:Mm9::chr6:48656532..48656548,+#_d226a1fbdb8c8bdb90deb2a759dfa368p@chr6:48656532..48656548, +
3.91e-58FFCP PHASE2:Mm9::chr10:76993352..76993362,+#_89f2c2991418f157ae597eeaedbfead7p@chr10:76993352..76993362, +
3.91e-58FFCP PHASE1:Mm9::chr19:46380513..46380522,+#_89f2c2991418f157ae597eeaedbfead7p12@Nfkb2