CL:0002078: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=meso-epithelial cell | |name=meso-epithelial cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date=2010-06-29T03:49:14Z | |obo_creation_date=2010-06-29T03:49:14Z | ||
|part_of= | |part_of= | ||
Latest revision as of 16:40, 12 September 2014
| Name: | meso-epithelial cell | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Epithelial cell derived from mesoderm or mesenchyme." [FMA:69076, GOC:tfm, http://63.198.234.228/OpenFMA/Meso-epithelial%20cell.html] | ||
| Xrefs: |
| ||
| Synonyms: | "epithelial mesenchymal cell" EXACT [] | ||
| Created by: | tmeehan | ||
| Creation date: | 2010-06-29T03:49:14Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000066(epithelial cell),CL:0002371(somatic cell) |
|---|---|
| develops_from: | CL:0000222(mesodermal cell) |
Children
| is a: | CL:0000115 (endothelial cell),CL:0000214 (synovial cell),CL:0002097 (cortical cell of adrenal gland),CL:0002174 (follicular cell of ovary),CL:0002306 (epithelial cell of proximal tubule) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10441-106E9 (synovial sarcoma cell line:HS-SY-II)
- 10493-107B7 (mesothelioma cell line:ACC-MESO-1)
- 10494-107B8 (mesothelioma cell line:ACC-MESO-4)
- 10624-108H3 (granulosa cell tumor cell line:KGN)
- 11207-116A1 (Endothelial Cells - Aortic, donor0)
- 11229-116C5 (CD14+ monocyte derived endothelial progenitor cells, donor1)
- 11236-116D3 (Endothelial Cells - Lymphatic, donor1)
- 11243-116E1 (Endothelial Cells - Umbilical vein, donor1)
- 11263-116G3 (Endothelial Cells - Aortic, donor1)
- 11264-116G4 (Endothelial Cells - Artery, donor1)
... further results Mouse (Mus musculus)
- 10441-106E9 (synovial sarcoma cell line:HS-SY-II)
- 10493-107B7 (mesothelioma cell line:ACC-MESO-1)
- 10494-107B8 (mesothelioma cell line:ACC-MESO-4)
- 10624-108H3 (granulosa cell tumor cell line:KGN)
- 11207-116A1 (Endothelial Cells - Aortic, donor0)
- 11229-116C5 (CD14+ monocyte derived endothelial progenitor cells, donor1)
- 11236-116D3 (Endothelial Cells - Lymphatic, donor1)
- 11243-116E1 (Endothelial Cells - Umbilical vein, donor1)
- 11263-116G3 (Endothelial Cells - Aortic, donor1)
- 11264-116G4 (Endothelial Cells - Artery, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002078 (meso-epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.61e-117 | FFCP PHASE2:Hg19::chr6:3753188..3753192,-#_b18ed2809f04249b04b64cf18144be92 | p@chr6:3753188..3753192, - |
| 3.61e-117 | FFCP PHASE1:Hg19::chr6:3753188..3753192,-#_b18ed2809f04249b04b64cf18144be92 | p@chr6:3753188..3753192, - |
| 1.28e-111 | FFCP PHASE2:Hg19::chr2:56216687..56216727,-#_865d75356dd3140b8e78d5dd71764359 | p1@MIR216A |
| 1.28e-111 | FFCP PHASE1:Hg19::chr2:56216687..56216727,-#_865d75356dd3140b8e78d5dd71764359 | p1@MIR216A |
| 9.18e-108 | FFCP PHASE1:Hg19::chr11:124761247..124761258,-#_31ec0435d4df9b43d30ac002548e2838 | p@chr11:124761247..124761258, - |
| 9.18e-108 | FFCP PHASE2:Hg19::chr11:124761247..124761258,-#_31ec0435d4df9b43d30ac002548e2838 | p@chr11:124761247..124761258, - |
| 1.26e-107 | FFCP PHASE1:Hg19::chr17:62084108..62084111,-#_0fa26827e4e3da91c6ddc99b9f749fbb | p5@ICAM2 |
| 1.26e-107 | FFCP PHASE2:Hg19::chr17:62084108..62084111,-#_0fa26827e4e3da91c6ddc99b9f749fbb | p5@ICAM2 |
| 5.39e-97 | FFCP PHASE1:Hg19::chr16:2220383..2220402,+#_e701ccfec059c50762b70cb2c52813b9 | p@chr16:2220383..2220402, + |
| 5.39e-97 | FFCP PHASE2:Hg19::chr16:2220383..2220402,+#_e701ccfec059c50762b70cb2c52813b9 | p@chr16:2220383..2220402, + |
| 2.31e-93 | FFCP PHASE1:Hg19::chrX:71299684..71299699,+#_0dcb5814a9f62c9eed66384ae880f10a | p@chrX:71299684..71299699, + |
| 2.31e-93 | FFCP PHASE2:Hg19::chrX:71299684..71299699,+#_0dcb5814a9f62c9eed66384ae880f10a | p@chrX:71299684..71299699, + |
| 2.59e-93 | FFCP PHASE1:Hg19::chr5:95920642..95920681,+#_1c67b1e5cfcaedbdc92bda504f8a3985 | p1@ENST00000513158 |
| 2.59e-93 | FFCP PHASE2:Hg19::chr5:95920642..95920681,+#_1c67b1e5cfcaedbdc92bda504f8a3985 | p1@ENST00000513158 |
| 1.06e-92 | FFCP PHASE1:Hg19::chr13:32835894..32835907,+#_3252057c82e8ee23d38ef7c6a67159c7 | p@chr13:32835894..32835907, + |
| 1.06e-92 | FFCP PHASE2:Hg19::chr13:32835894..32835907,+#_3252057c82e8ee23d38ef7c6a67159c7 | p@chr13:32835894..32835907, + |
| 4.79e-90 | FFCP PHASE1:Hg19::chr18:33047117..33047138,-#_8cffd539e7ec0046620d83e2b5947a6a | p@chr18:33047117..33047138, - |
| 4.79e-90 | FFCP PHASE2:Hg19::chr18:33047117..33047138,-#_8cffd539e7ec0046620d83e2b5947a6a | p@chr18:33047117..33047138, - |
| 6.7e-90 | FFCP PHASE1:Hg19::chr18:33046982..33046991,-#_530aaf60263bcfc81b5e0312f8753d4a | p@chr18:33046982..33046991, - |
| 6.7e-90 | FFCP PHASE2:Hg19::chr18:33046982..33046991,-#_530aaf60263bcfc81b5e0312f8753d4a | p@chr18:33046982..33046991, - |
| 7.52e-90 | FFCP PHASE2:Hg19::chr15:39423060..39423066,+#_d2bb636066285299bb17378b8e8f51d3 | p@chr15:39423060..39423066, + |
| 7.52e-90 | FFCP PHASE1:Hg19::chr15:39423060..39423066,+#_d2bb636066285299bb17378b8e8f51d3 | p@chr15:39423060..39423066, + |
| 8.67e-89 | FFCP PHASE1:Hg19::chrX:15518894..15518905,+#_17df8e21066d2c3bc2faf45ec08e6e38 | p2@BMX |
| 8.67e-89 | FFCP PHASE2:Hg19::chrX:15518894..15518905,+#_17df8e21066d2c3bc2faf45ec08e6e38 | p2@BMX |
| 8.68e-88 | FFCP PHASE1:Hg19::chr12:105863654..105863682,+#_c12819a03c65dbfd4b6d2b263a0fcf64 | p@chr12:105863654..105863682, + |
| 8.68e-88 | FFCP PHASE2:Hg19::chr12:105863654..105863682,+#_c12819a03c65dbfd4b6d2b263a0fcf64 | p@chr12:105863654..105863682, + |
| 1.94e-87 | FFCP PHASE1:Hg19::chr14:38725249..38725254,-#_15f3e6257442d9c35d9d2bb7a8cfb708 | p6@CLEC14A |
| 1.94e-87 | FFCP PHASE2:Hg19::chr14:38725249..38725254,-#_15f3e6257442d9c35d9d2bb7a8cfb708 | p6@CLEC14A |
| 8.81e-87 | FFCP PHASE1:Hg19::chr14:38725228..38725236,-#_d2c3c083703c5c16578c009242905552 | p5@CLEC14A |
| 8.81e-87 | FFCP PHASE2:Hg19::chr14:38725228..38725236,-#_d2c3c083703c5c16578c009242905552 | p5@CLEC14A |
| 2.0e-86 | FFCP PHASE1:Hg19::chr18:33047157..33047168,-#_1366f614473e3d9a32ea4b971262ef78 | p@chr18:33047157..33047168, - |
| 2.0e-86 | FFCP PHASE2:Hg19::chr18:33047157..33047168,-#_1366f614473e3d9a32ea4b971262ef78 | p@chr18:33047157..33047168, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr4:86335502..86335509,+#_ab2327fa167ab3045dff25e12b49065f | p@chr4:86335502..86335509, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:35093764..35093773,-#_ab2327fa167ab3045dff25e12b49065f | p@chr17:35093764..35093773, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:94580525..94580530,+#_ab2327fa167ab3045dff25e12b49065f | p@chr10:94580525..94580530, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:8400090..8400093,+#_ab2327fa167ab3045dff25e12b49065f | p@chr12:8400090..8400093, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr1:173044327..173044331,+#_ab2327fa167ab3045dff25e12b49065f | p@chr1:173044327..173044331, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr9:42915101..42915106,-#_ab2327fa167ab3045dff25e12b49065f | p@chr9:42915101..42915106, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr5:32912678..32912687,+#_ab2327fa167ab3045dff25e12b49065f | p@chr5:32912678..32912687, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr8:114250006..114250039,-#_ab2327fa167ab3045dff25e12b49065f | p@chr8:114250006..114250039, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:117737077..117737096,-#_ab2327fa167ab3045dff25e12b49065f | p@chr11:117737077..117737096, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:93895817..93895819,-#_ab2327fa167ab3045dff25e12b49065f | p@chr10:93895817..93895819, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:32178407..32178408,-#_ab2327fa167ab3045dff25e12b49065f | p@chr15:32178407..32178408, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr12:86691503..86691504,-#_ab2327fa167ab3045dff25e12b49065f | p@chr12:86691503..86691504, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:117419958..117419964,+#_ab2327fa167ab3045dff25e12b49065f | p@chr10:117419958..117419964, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr5:53111093..53111095,+#_ab2327fa167ab3045dff25e12b49065f | p@chr5:53111093..53111095, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr13:113543694..113543702,-#_ab2327fa167ab3045dff25e12b49065f | p@chr13:113543694..113543702, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:93942324..93942342,-#_ab2327fa167ab3045dff25e12b49065f | p@chr10:93942324..93942342, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr2:11935531..11935538,-#_ab2327fa167ab3045dff25e12b49065f | p@chr2:11935531..11935538, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:35093377..35093381,+#_ab2327fa167ab3045dff25e12b49065f | p@chr17:35093377..35093381, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr2:11935531..11935538,-#_ab2327fa167ab3045dff25e12b49065f | p@chr2:11935531..11935538, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr7:87919399..87919406,+#_ab2327fa167ab3045dff25e12b49065f | p@chr7:87919399..87919406, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr9:62199266..62199267,+#_ab2327fa167ab3045dff25e12b49065f | p@chr9:62199266..62199267, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:85586219..85586227,+#_ab2327fa167ab3045dff25e12b49065f | p@chr10:85586219..85586227, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr3:9705000..9705004,-#_ab2327fa167ab3045dff25e12b49065f | p4@Pag1 |
| 3.07e-86 | FFCP PHASE2:Mm9::chr15:90508949..90508955,-#_ab2327fa167ab3045dff25e12b49065f | p@chr15:90508949..90508955, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:24807620..24807650,-#_ab2327fa167ab3045dff25e12b49065f | p@chr17:24807620..24807650, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:82193340..82193343,+#_ab2327fa167ab3045dff25e12b49065f | p@chr15:82193340..82193343, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr8:87745380..87745385,+#_ab2327fa167ab3045dff25e12b49065f | p@chr8:87745380..87745385, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:39297570..39297573,-#_ab2327fa167ab3045dff25e12b49065f | p@chr18:39297570..39297573, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr14:15179132..15179141,+#_ab2327fa167ab3045dff25e12b49065f | p8@Il3ra |
| 3.07e-86 | FFCP PHASE1:Mm9::chr9:42915220..42915225,-#_ab2327fa167ab3045dff25e12b49065f | p@chr9:42915220..42915225, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:35106363..35106372,-#_ab2327fa167ab3045dff25e12b49065f | p@chr17:35106363..35106372, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr13:113543694..113543702,-#_ab2327fa167ab3045dff25e12b49065f | p@chr13:113543694..113543702, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr7:118133901..118133904,-#_ab2327fa167ab3045dff25e12b49065f | p@chr7:118133901..118133904, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr8:25530071..25530072,+#_ab2327fa167ab3045dff25e12b49065f | p@chr8:25530071..25530072, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:60279719..60279737,-#_ab2327fa167ab3045dff25e12b49065f | p@chr10:60279719..60279737, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:35881716..35881727,-#_ab2327fa167ab3045dff25e12b49065f | p@chr18:35881716..35881727, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr13:96429295..96429302,-#_ab2327fa167ab3045dff25e12b49065f | p@chr13:96429295..96429302, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr13:96429602..96429605,-#_ab2327fa167ab3045dff25e12b49065f | p@chr13:96429602..96429605, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr5:76329688..76329692,-#_ab2327fa167ab3045dff25e12b49065f | p@chr5:76329688..76329692, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr7:117101788..117101793,+#_ab2327fa167ab3045dff25e12b49065f | p@chr7:117101788..117101793, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:117419958..117419964,+#_ab2327fa167ab3045dff25e12b49065f | p@chr10:117419958..117419964, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr12:74684893..74684910,-#_ab2327fa167ab3045dff25e12b49065f | p@chr12:74684893..74684910, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr8:11183699..11183703,-#_ab2327fa167ab3045dff25e12b49065f | p@chr8:11183699..11183703, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr6:129180613..129180616,+#_ab2327fa167ab3045dff25e12b49065f | p@chr6:129180613..129180616, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr1:163794592..163794593,+#_ab2327fa167ab3045dff25e12b49065f | p@chr1:163794592..163794593, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr5:53111093..53111095,+#_ab2327fa167ab3045dff25e12b49065f | p@chr5:53111093..53111095, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:86691503..86691504,-#_ab2327fa167ab3045dff25e12b49065f | p@chr12:86691503..86691504, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:39297570..39297573,-#_ab2327fa167ab3045dff25e12b49065f | p@chr18:39297570..39297573, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:93499468..93499494,-#_ab2327fa167ab3045dff25e12b49065f | p@chr10:93499468..93499494, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:35096519..35096524,+#_ab2327fa167ab3045dff25e12b49065f | p@chr17:35096519..35096524, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr16:28911901..28911906,-#_ab2327fa167ab3045dff25e12b49065f | p@chr16:28911901..28911906, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr7:109031260..109031268,+#_ab2327fa167ab3045dff25e12b49065f | p@chr7:109031260..109031268, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:66883923..66883955,-#_ab2327fa167ab3045dff25e12b49065f | p@chr1:66883923..66883955, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:68437375..68437378,+#_ab2327fa167ab3045dff25e12b49065f | p@chr11:68437375..68437378, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:34798597..34798606,+#_ab2327fa167ab3045dff25e12b49065f | p@chr17:34798597..34798606, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr5:75375903..75375931,+#_ab2327fa167ab3045dff25e12b49065f | p@chr5:75375903..75375931, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:21389022..21389032,+#_ab2327fa167ab3045dff25e12b49065f | p@chr10:21389022..21389032, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:8586393..8586401,+#_ab2327fa167ab3045dff25e12b49065f | p@chr10:8586393..8586401, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:12388232..12388237,+#_ab2327fa167ab3045dff25e12b49065f | p@chr17:12388232..12388237, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:35945332..35945335,+#_ab2327fa167ab3045dff25e12b49065f | p@chr17:35945332..35945335, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr8:127816016..127816021,+#_ab2327fa167ab3045dff25e12b49065f | p@chr8:127816016..127816021, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chrX:166418658..166418683,+#_ab2327fa167ab3045dff25e12b49065f | p@chrX:166418658..166418683, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr13:113053257..113053258,+#_ab2327fa167ab3045dff25e12b49065f | p@chr13:113053257..113053258, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:85585949..85585969,-#_ab2327fa167ab3045dff25e12b49065f | p@chr10:85585949..85585969, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:60398371..60398393,-#_ab2327fa167ab3045dff25e12b49065f | p@chr18:60398371..60398393, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:126939557..126939562,+#_ab2327fa167ab3045dff25e12b49065f | p@chr4:126939557..126939562, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:35094068..35094092,-#_ab2327fa167ab3045dff25e12b49065f | p@chr17:35094068..35094092, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr3:121593688..121593695,+#_ab2327fa167ab3045dff25e12b49065f | p@chr3:121593688..121593695, + |
