Difference between revisions of "CL:0002419"
From FANTOM5_SSTAR
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{CL | {{CL | ||
− | | | + | |alt_id= |
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
|comment= | |comment= | ||
− | |||
− | |||
− | |||
|created_by=tmeehan | |created_by=tmeehan | ||
− | | | + | |def="A T cell that expresses a T cell receptor complex and has completed T cell selection." [GOC:tfm] |
− | |||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
+ | |disjoint_from= | ||
|has_quality= | |has_quality= | ||
+ | |id=CL:0002419 | ||
+ | |is_a=CL:0000084 | ||
+ | |is_obsolete= | ||
|located_in= | |located_in= | ||
+ | |name=mature T cell | ||
+ | |namespace=FANTOM | ||
+ | |obo_creation_date=2010-10-12T01:56:15Z | ||
|part_of= | |part_of= | ||
+ | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl | ||
− | | | + | |subset= |
− | | | + | |synonym="CD3e-positive T cell" EXACT [];;"CD3epsilon T cell" RELATED [];;"mature T-cell" EXACT [] |
+ | |union_of= | ||
+ | |xref= | ||
}} | }} |
Latest revision as of 07:42, 12 September 2014
Name: | mature T cell |
---|---|
Namespace: | FANTOM |
Definition: | "A T cell that expresses a T cell receptor complex and has completed T cell selection." [GOC:tfm] |
Synonyms: |
"CD3e-positive T cell" EXACT [] "CD3epsilon T cell" RELATED [] "mature T-cell" EXACT [] |
Created by: | tmeehan |
Creation date: | 2010-10-12T01:56:15Z |
Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.
link to ontology dataset
data
Parents
is_a: | CL:0000084(T cell) |
---|
Children
is a: | CL:0000791 (mature alpha-beta T cell),CL:0000813 (memory T cell),CL:0000815 (regulatory T cell),CL:0000898 (naive T cell),CL:0000911 (effector T cell) |
---|
Ontology Tree: Loaded from BioPortal
FF samples
It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10768-110F3
- 10777-110G3 (NK T cell leukemia cell line:KHYG-1)
- 11225-116C1 (CD4+ T Cells, donor1)
- 11226-116C2 (CD8+ T Cells, donor1)
- 11306-117C1 (CD4+ T Cells, donor2)
- 11307-117C2 (CD8+ T Cells, donor2)
- 11382-118B5 (CD4+ T Cells, donor3)
- 11383-118B6 (CD8+ T Cells, donor3)
- 11780-124A7 (CD4+CD25+CD45RA+ naive regulatory T cells, donor1)
- 11782-124A9 (CD4+CD25+CD45RA- memory regulatory T cells, donor1)
... further results Mouse (Mus musculus)
- 10768-110F3
- 10777-110G3 (NK T cell leukemia cell line:KHYG-1)
- 11225-116C1 (CD4+ T Cells, donor1)
- 11226-116C2 (CD8+ T Cells, donor1)
- 11306-117C1 (CD4+ T Cells, donor2)
- 11307-117C2 (CD8+ T Cells, donor2)
- 11382-118B5 (CD4+ T Cells, donor3)
- 11383-118B6 (CD8+ T Cells, donor3)
- 11780-124A7 (CD4+CD25+CD45RA+ naive regulatory T cells, donor1)
- 11782-124A9 (CD4+CD25+CD45RA- memory regulatory T cells, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002419 (mature T cell), sorted by p-values
Analyst: Hideya Kawaji
link to source dataset
human : data
mouse : data
P-value | FFCP | Short description |
---|---|---|
4.82e-125 | FFCP PHASE1:Hg19::chr5:35859622..35859626,+#_3f8199c8698213f6b47c061dd524a686 | p@chr5:35859622..35859626, + |
4.82e-125 | FFCP PHASE2:Hg19::chr5:35859622..35859626,+#_3f8199c8698213f6b47c061dd524a686 | p@chr5:35859622..35859626, + |
2.55e-96 | FFCP PHASE2:Hg19::chr15:89179440..89179457,-#_9ac666b7634ee804ac3bd5fd0d902218 | -, p@chr15:89179440..89179457 |
2.55e-96 | FFCP PHASE1:Hg19::chr15:89179440..89179457,-#_9ac666b7634ee804ac3bd5fd0d902218 | p@chr15:89179440..89179457, - |
1.42e-94 | FFCP PHASE1:Hg19::chr5:35854487..35854499,-#_c0b2b60e6f4b6dd116149c52715f6ce1 | p@chr5:35854487..35854499, - |
1.42e-94 | FFCP PHASE2:Hg19::chr5:35854487..35854499,-#_c0b2b60e6f4b6dd116149c52715f6ce1 | p@chr5:35854487..35854499, - |
1.09e-92 | FFCP PHASE2:Hg19::chr5:35854779..35854826,+#_c8855caffc6de7c4b08d40d13e41a5b1 | p@chr5:35854779..35854826, + |
1.09e-92 | FFCP PHASE1:Hg19::chr5:35854779..35854826,+#_c8855caffc6de7c4b08d40d13e41a5b1 | p@chr5:35854779..35854826, + |
4.33e-92 | FFCP PHASE1:Hg19::chr4:103551892..103551903,-#_2e3abb35f828d39cf81ce8ed178099a6 | p@chr4:103551892..103551903, - |
4.33e-92 | FFCP PHASE2:Hg19::chr4:103551892..103551903,-#_2e3abb35f828d39cf81ce8ed178099a6 | -, p@chr4:103551892..103551903 |
1.97e-90 | FFCP PHASE2:Hg19::chr5:35856882..35856909,-#_895ab90d2395ca9da95141f84fb9bf56 | p@chr5:35856882..35856909, - |
1.97e-90 | FFCP PHASE1:Hg19::chr5:35856882..35856909,-#_895ab90d2395ca9da95141f84fb9bf56 | p@chr5:35856882..35856909, - |
2.93e-90 | FFCP PHASE1:Hg19::chr18:68318174..68318193,-#_e220e3223423f72cd19cd74eff6323aa | p1@GTSCR1 |
2.93e-90 | FFCP PHASE2:Hg19::chr18:68318174..68318193,-#_e220e3223423f72cd19cd74eff6323aa | p1@GTSCR1 |
5.78e-88 | FFCP PHASE2:Hg19::chr7:97880779..97880793,+#_53fffc3c11342dda6fa71b6b66e0843d | p@chr7:97880779..97880793, + |
5.78e-88 | FFCP PHASE1:Hg19::chr7:97880779..97880793,+#_53fffc3c11342dda6fa71b6b66e0843d | p@chr7:97880779..97880793, + |
8.73e-88 | FFCP PHASE2:Hg19::chr1:25255894..25255906,+#_b05b5872683980a8bf8273fe3a786c17 | p@chr1:25255894..25255906, + |
8.73e-88 | FFCP PHASE1:Hg19::chr1:25255894..25255906,+#_b05b5872683980a8bf8273fe3a786c17 | p@chr1:25255894..25255906, + |
4.59e-87 | FFCP PHASE1:Hg19::chr2:38830433..38830444,-#_84f56a7ddc70ebfc42e3179244f91e24 | p10@HNRPLL |
4.59e-87 | FFCP PHASE2:Hg19::chr2:38830433..38830444,-#_84f56a7ddc70ebfc42e3179244f91e24 | p10@HNRPLL |
1.31e-86 | FFCP PHASE1:Mm9::chr11:99015330..99015341,-#_aa962170ee4a6abd9f15f1828b309188 | p@chr11:99015330..99015341, - |
1.31e-86 | FFCP PHASE2:Mm9::chr19:10869146..10869168,-#_aa962170ee4a6abd9f15f1828b309188 | p@chr19:10869146..10869168, - |
1.31e-86 | FFCP PHASE1:Mm9::chr4:151490126..151490137,+#_aa962170ee4a6abd9f15f1828b309188 | p3@Tnfrsf25 |
1.31e-86 | FFCP PHASE1:Mm9::chr4:32339511..32339518,+#_aa962170ee4a6abd9f15f1828b309188 | p@chr4:32339511..32339518, + |
1.31e-86 | FFCP PHASE2:Mm9::chr11:99015330..99015341,-#_aa962170ee4a6abd9f15f1828b309188 | -, p@chr11:99015330..99015341 |
1.31e-86 | FFCP PHASE2:Mm9::chr6:48637679..48637692,+#_aa962170ee4a6abd9f15f1828b309188 | p@chr6:48637679..48637692, + |
1.31e-86 | FFCP PHASE1:Mm9::chr6:48637679..48637692,+#_aa962170ee4a6abd9f15f1828b309188 | p@chr6:48637679..48637692, + |
1.31e-86 | FFCP PHASE2:Mm9::chr14:54150421..54150439,+#_aa962170ee4a6abd9f15f1828b309188 | p1@uc007tsm.1 |
1.31e-86 | FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_aa962170ee4a6abd9f15f1828b309188 | p1@ENSMUST00000103733 |
1.31e-86 | FFCP PHASE2:Mm9::chr4:151490126..151490137,+#_aa962170ee4a6abd9f15f1828b309188 | p3@Tnfrsf25 |
1.31e-86 | FFCP PHASE2:Mm9::chr4:32339511..32339518,+#_aa962170ee4a6abd9f15f1828b309188 | p@chr4:32339511..32339518, + |
1.31e-86 | FFCP PHASE1:Mm9::chr19:10869146..10869168,-#_aa962170ee4a6abd9f15f1828b309188 | p@chr19:10869146..10869168, - |
1.31e-86 | FFCP PHASE1:Mm9::chr14:54150421..54150439,+#_aa962170ee4a6abd9f15f1828b309188 | p1@uc007tsm.1 |
1.31e-86 | FFCP PHASE1:Mm9::chr14:54831123..54831141,+#_aa962170ee4a6abd9f15f1828b309188 | p1@ENSMUST00000103733 |
2.98e-86 | FFCP PHASE2:Hg19::chr10:14611822..14611844,-#_df2710040254bdd14ebb689a22c349a1 | p@chr10:14611822..14611844, - |
2.98e-86 | FFCP PHASE1:Hg19::chr10:14611822..14611844,-#_df2710040254bdd14ebb689a22c349a1 | p@chr10:14611822..14611844, - |
3.57e-86 | FFCP PHASE1:Hg19::chr4:90205082..90205093,+#_2b919caa0cc131db00603efc6cf6eec6 | p@chr4:90205082..90205093, + |
3.57e-86 | FFCP PHASE2:Hg19::chr4:90205082..90205093,+#_2b919caa0cc131db00603efc6cf6eec6 | p@chr4:90205082..90205093, + |
9.89e-85 | FFCP PHASE2:Hg19::chr16:57162957..57162973,+#_34cbfd5e789bbe07242c0df533dbbc5f | p@chr16:57162957..57162973, + |
9.89e-85 | FFCP PHASE1:Hg19::chr16:57162957..57162973,+#_34cbfd5e789bbe07242c0df533dbbc5f | p@chr16:57162957..57162973, + |
1.01e-83 | FFCP PHASE1:Hg19::chr2:87053288..87053295,-#_939331a0ac358b2e1b73ca84422df189 | p@chr2:87053288..87053295, - |
1.01e-83 | FFCP PHASE2:Hg19::chr2:87053288..87053295,-#_939331a0ac358b2e1b73ca84422df189 | p@chr2:87053288..87053295, - |
1.1e-83 | FFCP PHASE1:Hg19::chr6:128299606..128299618,+#_840318736d7df227647c608701613975 | p@chr6:128299606..128299618, + |
1.1e-83 | FFCP PHASE1:Hg19::chr11:122709344..122709378,+#_840318736d7df227647c608701613975 | p@chr11:122709344..122709378, + |
1.1e-83 | FFCP PHASE2:Hg19::chr11:122709344..122709378,+#_840318736d7df227647c608701613975 | p@chr11:122709344..122709378, + |
1.1e-83 | FFCP PHASE2:Hg19::chr6:128299606..128299618,+#_840318736d7df227647c608701613975 | p@chr6:128299606..128299618, + |
1.69e-83 | FFCP PHASE2:Hg19::chr5:35780579..35780585,+#_2739ae6609522559a176bd49810e6abd | p@chr5:35780579..35780585, + |
1.69e-83 | FFCP PHASE1:Hg19::chr5:35780579..35780585,+#_2739ae6609522559a176bd49810e6abd | p@chr5:35780579..35780585, + |
1.02e-82 | FFCP PHASE1:Hg19::chr5:35859218..35859252,-#_71e5e8536e2f158099bb264f585fe4e6 | p@chr5:35859218..35859252, - |
1.02e-82 | FFCP PHASE2:Hg19::chr5:35859218..35859252,-#_71e5e8536e2f158099bb264f585fe4e6 | p@chr5:35859218..35859252, - |
1.33e-82 | FFCP PHASE2:Hg19::chr12:49375076..49375089,-#_105723773794f08f239db28c48cc4d83 | p@chr12:49375076..49375089, - |
1.33e-82 | FFCP PHASE1:Hg19::chr12:49375076..49375089,-#_105723773794f08f239db28c48cc4d83 | p@chr12:49375076..49375089, - |
3.02e-82 | FFCP PHASE1:Hg19::chr10:9060907..9060927,-#_4b35f9b5b833ebeb9705f5eb9751958c | p@chr10:9060907..9060927, - |
3.02e-82 | FFCP PHASE2:Hg19::chr10:9060907..9060927,-#_4b35f9b5b833ebeb9705f5eb9751958c | p@chr10:9060907..9060927, - |
4.05e-82 | FFCP PHASE2:Hg19::chr12:10561626..10561641,-#_445027bdacd018eda1b0d8bd9887d061 | p@chr12:10561626..10561641, - |
4.05e-82 | FFCP PHASE1:Hg19::chr12:10561626..10561641,-#_445027bdacd018eda1b0d8bd9887d061 | p@chr12:10561626..10561641, - |
4.31e-82 | FFCP PHASE1:Hg19::chr7:150178764..150178778,-#_0b6757c71fa82f953b7712d8dd71566a | p@chr7:150178764..150178778, - |
4.31e-82 | FFCP PHASE2:Hg19::chr7:150178764..150178778,-#_0b6757c71fa82f953b7712d8dd71566a | p@chr7:150178764..150178778, - |
5.81e-82 | FFCP PHASE2:Hg19::chr2:182038499..182038509,+#_9613d536073686b958f188f686f91259 | p@chr2:182038499..182038509, + |
5.81e-82 | FFCP PHASE1:Hg19::chr2:182038499..182038509,+#_9613d536073686b958f188f686f91259 | p@chr2:182038499..182038509, + |
1.02e-81 | FFCP PHASE1:Hg19::chr4:4271366..4271377,-#_fc7218fc4b7e641bd2fa36fce6692c0f | p@chr4:4271366..4271377, - |
1.02e-81 | FFCP PHASE2:Hg19::chr4:4271366..4271377,-#_fc7218fc4b7e641bd2fa36fce6692c0f | p@chr4:4271366..4271377, - |
8.22e-81 | FFCP PHASE2:Hg19::chr11:108094238..108094253,+#_90f5753969476e5fb23a7384c3cef2f2 | p10@ATM |
8.22e-81 | FFCP PHASE1:Hg19::chr11:108094238..108094253,+#_90f5753969476e5fb23a7384c3cef2f2 | p10@ATM |
2.22e-80 | FFCP PHASE1:Hg19::chr12:12867774..12867787,-#_1b2981962a9ab98268192a3473ecc694 | p@chr12:12867774..12867787, - |
2.22e-80 | FFCP PHASE2:Hg19::chr12:12867774..12867787,-#_1b2981962a9ab98268192a3473ecc694 | p@chr12:12867774..12867787, - |
8.6e-79 | FFCP PHASE1:Hg19::chr5:67571114..67571129,-#_bad98ea0bfd16cbc3f597a875499d71f | p@chr5:67571114..67571129, - |
8.6e-79 | FFCP PHASE2:Hg19::chr5:67571114..67571129,-#_bad98ea0bfd16cbc3f597a875499d71f | p@chr5:67571114..67571129, - |
2.3e-78 | FFCP PHASE2:Mm9::chr5:123440486..123440504,-#_fdac81d0c82941def06db73d5244beea | p@chr5:123440486..123440504, - |
2.3e-78 | FFCP PHASE1:Mm9::chr12:74704873..74704900,+#_fdac81d0c82941def06db73d5244beea | p@chr12:74704873..74704900, + |
2.3e-78 | FFCP PHASE1:Mm9::chr7:31935025..31935037,+#_fdac81d0c82941def06db73d5244beea | p@chr7:31935025..31935037, + |
2.3e-78 | FFCP PHASE1:Mm9::chr5:123440486..123440504,-#_fdac81d0c82941def06db73d5244beea | p@chr5:123440486..123440504, - |
2.3e-78 | FFCP PHASE2:Mm9::chr14:54811976..54811990,+#_fdac81d0c82941def06db73d5244beea | p1@ENSMUST00000103714 |
2.3e-78 | FFCP PHASE2:Mm9::chr8:84082784..84082795,+#_fdac81d0c82941def06db73d5244beea | p@chr8:84082784..84082795, + |
2.3e-78 | FFCP PHASE2:Mm9::chr14:56207154..56207165,-#_fdac81d0c82941def06db73d5244beea | p@chr14:56207154..56207165, - |
2.3e-78 | FFCP PHASE1:Mm9::chr8:84082784..84082795,+#_fdac81d0c82941def06db73d5244beea | p@chr8:84082784..84082795, + |
2.3e-78 | FFCP PHASE2:Mm9::chr12:74704873..74704900,+#_fdac81d0c82941def06db73d5244beea | p@chr12:74704873..74704900, + |
2.3e-78 | FFCP PHASE1:Mm9::chr14:54811976..54811990,+#_fdac81d0c82941def06db73d5244beea | p1@ENSMUST00000103714 |
2.3e-78 | FFCP PHASE1:Mm9::chr14:56207154..56207165,-#_fdac81d0c82941def06db73d5244beea | -, p@chr14:56207154..56207165 |
2.3e-78 | FFCP PHASE2:Mm9::chr7:31935025..31935037,+#_fdac81d0c82941def06db73d5244beea | p@chr7:31935025..31935037, + |
2.56e-78 | FFCP PHASE2:Hg19::chr6:143228788..143228799,-#_99ff90eed1b944b82ff6e91b38012145 | p@chr6:143228788..143228799, - |
2.56e-78 | FFCP PHASE1:Hg19::chr6:143228788..143228799,-#_99ff90eed1b944b82ff6e91b38012145 | p@chr6:143228788..143228799, - |
2.82e-78 | FFCP PHASE2:Mm9::chr4:32422919..32422935,+#_977803ba7784ee3aa48de97499d69f2d | p@chr4:32422919..32422935, + |
2.82e-78 | FFCP PHASE1:Mm9::chr5:123440767..123440778,+#_977803ba7784ee3aa48de97499d69f2d | p@chr5:123440767..123440778, + |
2.82e-78 | FFCP PHASE2:Mm9::chr14:54838649..54838660,+#_977803ba7784ee3aa48de97499d69f2d | +, p@chr14:54838649..54838660 |
2.82e-78 | FFCP PHASE2:Mm9::chr5:123440767..123440778,+#_977803ba7784ee3aa48de97499d69f2d | p@chr5:123440767..123440778, + |
2.82e-78 | FFCP PHASE1:Mm9::chr4:32422919..32422935,+#_977803ba7784ee3aa48de97499d69f2d | p@chr4:32422919..32422935, + |
2.82e-78 | FFCP PHASE1:Mm9::chr14:54838649..54838660,+#_977803ba7784ee3aa48de97499d69f2d | p@chr14:54838649..54838660, + |
3.46e-78 | FFCP PHASE2:Mm9::chr15:27786221..27786240,-#_7d1ba1edadb550f46e51983386a49963 | p@chr15:27786221..27786240, - |
3.46e-78 | FFCP PHASE1:Mm9::chr15:27786221..27786240,-#_7d1ba1edadb550f46e51983386a49963 | p@chr15:27786221..27786240, - |
4.25e-78 | FFCP PHASE2:Mm9::chr6:99215016..99215036,+#_5ba6feb498c10c80b01c50c531f83501 | p@chr6:99215016..99215036, + |
4.25e-78 | FFCP PHASE1:Mm9::chr3:103672068..103672090,-#_5ba6feb498c10c80b01c50c531f83501 | p@chr3:103672068..103672090, - |
4.25e-78 | FFCP PHASE2:Mm9::chr3:103672068..103672090,-#_5ba6feb498c10c80b01c50c531f83501 | p@chr3:103672068..103672090, - |
4.25e-78 | FFCP PHASE1:Mm9::chr6:99215016..99215036,+#_5ba6feb498c10c80b01c50c531f83501 | p@chr6:99215016..99215036, + |
5.22e-78 | FFCP PHASE2:Mm9::chr6:48634453..48634468,-#_3681775e305e5948fb2439a8f6439468 | p@chr6:48634453..48634468, - |
5.22e-78 | FFCP PHASE1:Mm9::chr6:48634453..48634468,-#_3681775e305e5948fb2439a8f6439468 | p@chr6:48634453..48634468, - |
6.45e-78 | FFCP PHASE2:Hg19::chr7:36816941..36816949,+#_deb06978ff4c8f16907139b342241761 | +, p@chr7:36816941..36816949 |
6.45e-78 | FFCP PHASE1:Hg19::chr7:36816941..36816949,+#_deb06978ff4c8f16907139b342241761 | p@chr7:36816941..36816949, + |
7.86e-78 | FFCP PHASE2:Mm9::chr15:60018823..60018838,-#_f07e40d328f8820f86e930fdc2ffb104 | p5@uc007vxz.1 |
7.86e-78 | FFCP PHASE1:Mm9::chr15:60018823..60018838,-#_f07e40d328f8820f86e930fdc2ffb104 | p5@uc007vxz.1 |