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{{CL
 
{{CL
−
|id=CL:0002419
+
|alt_id=
−
|name=mature T cell
 
−
|namespace=cell;;efo
 
−
|def="A T cell that expresses a T cell receptor complex and has completed T cell selection." [GOC:tfm]
 
−
|xref=
 
−
|is_a=CL:0000084
 
−
|synonym="CD3e-positive T cell" EXACT [];;"CD3epsilon T cell" RELATED [];;"mature T-cell" EXACT []
 
 
|comment=
 
|comment=
−
|alt_id=
 
−
|disjoint_from=
 
−
|union_of=
 
 
|created_by=tmeehan
 
|created_by=tmeehan
−
|obo_creation_date=2010-10-12T01:56:15Z
+
|def="A T cell that expresses a T cell receptor complex and has completed T cell selection." [GOC:tfm]
−
|subset=
 
 
|derives_from=
 
|derives_from=
 
|develops_from=
 
|develops_from=
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=CL:0002419
 +
|is_a=CL:0000084
 +
|is_obsolete=
 
|located_in=
 
|located_in=
 +
|name=mature T cell
 +
|namespace=FANTOM
 +
|obo_creation_date=2010-10-12T01:56:15Z
 
|part_of=
 
|part_of=
 +
|preceded_by=
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
 
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
−
|is_obsolete=
+
|subset=
−
|preceded_by=
+
|synonym="CD3e-positive T cell" EXACT [];;"CD3epsilon T cell" RELATED [];;"mature T-cell" EXACT []
 +
|union_of=
 +
|xref=
 
}}
 
}}

Latest revision as of 07:42, 12 September 2014

Name:mature T cell
Namespace:FANTOM
Definition:"A T cell that expresses a T cell receptor complex and has completed T cell selection." [GOC:tfm]
Synonyms: "CD3e-positive T cell" EXACT []
"CD3epsilon T cell" RELATED []
"mature T-cell" EXACT []
Created by:tmeehan
Creation date:2010-10-12T01:56:15Z


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data

Parents

is_a:CL:0000084(T cell)



Children


is a:CL:0000791 (mature alpha-beta T cell),CL:0000813 (memory T cell),CL:0000815 (regulatory T cell),CL:0000898 (naive T cell),CL:0000911 (effector T cell)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002419 (mature T cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
4.82e-125FFCP PHASE1:Hg19::chr5:35859622..35859626,+#_3f8199c8698213f6b47c061dd524a686p@chr5:35859622..35859626, +
4.82e-125FFCP PHASE2:Hg19::chr5:35859622..35859626,+#_3f8199c8698213f6b47c061dd524a686p@chr5:35859622..35859626, +
2.55e-96FFCP PHASE2:Hg19::chr15:89179440..89179457,-#_9ac666b7634ee804ac3bd5fd0d902218-, p@chr15:89179440..89179457
2.55e-96FFCP PHASE1:Hg19::chr15:89179440..89179457,-#_9ac666b7634ee804ac3bd5fd0d902218p@chr15:89179440..89179457, -
1.42e-94FFCP PHASE1:Hg19::chr5:35854487..35854499,-#_c0b2b60e6f4b6dd116149c52715f6ce1p@chr5:35854487..35854499, -
1.42e-94FFCP PHASE2:Hg19::chr5:35854487..35854499,-#_c0b2b60e6f4b6dd116149c52715f6ce1p@chr5:35854487..35854499, -
1.09e-92FFCP PHASE2:Hg19::chr5:35854779..35854826,+#_c8855caffc6de7c4b08d40d13e41a5b1p@chr5:35854779..35854826, +
1.09e-92FFCP PHASE1:Hg19::chr5:35854779..35854826,+#_c8855caffc6de7c4b08d40d13e41a5b1p@chr5:35854779..35854826, +
4.33e-92FFCP PHASE1:Hg19::chr4:103551892..103551903,-#_2e3abb35f828d39cf81ce8ed178099a6p@chr4:103551892..103551903, -
4.33e-92FFCP PHASE2:Hg19::chr4:103551892..103551903,-#_2e3abb35f828d39cf81ce8ed178099a6-, p@chr4:103551892..103551903
1.97e-90FFCP PHASE2:Hg19::chr5:35856882..35856909,-#_895ab90d2395ca9da95141f84fb9bf56p@chr5:35856882..35856909, -
1.97e-90FFCP PHASE1:Hg19::chr5:35856882..35856909,-#_895ab90d2395ca9da95141f84fb9bf56p@chr5:35856882..35856909, -
2.93e-90FFCP PHASE1:Hg19::chr18:68318174..68318193,-#_e220e3223423f72cd19cd74eff6323aap1@GTSCR1
2.93e-90FFCP PHASE2:Hg19::chr18:68318174..68318193,-#_e220e3223423f72cd19cd74eff6323aap1@GTSCR1
5.78e-88FFCP PHASE2:Hg19::chr7:97880779..97880793,+#_53fffc3c11342dda6fa71b6b66e0843dp@chr7:97880779..97880793, +
5.78e-88FFCP PHASE1:Hg19::chr7:97880779..97880793,+#_53fffc3c11342dda6fa71b6b66e0843dp@chr7:97880779..97880793, +
8.73e-88FFCP PHASE2:Hg19::chr1:25255894..25255906,+#_b05b5872683980a8bf8273fe3a786c17p@chr1:25255894..25255906, +
8.73e-88FFCP PHASE1:Hg19::chr1:25255894..25255906,+#_b05b5872683980a8bf8273fe3a786c17p@chr1:25255894..25255906, +
4.59e-87FFCP PHASE1:Hg19::chr2:38830433..38830444,-#_84f56a7ddc70ebfc42e3179244f91e24p10@HNRPLL
4.59e-87FFCP PHASE2:Hg19::chr2:38830433..38830444,-#_84f56a7ddc70ebfc42e3179244f91e24p10@HNRPLL
1.31e-86FFCP PHASE1:Mm9::chr11:99015330..99015341,-#_aa962170ee4a6abd9f15f1828b309188p@chr11:99015330..99015341, -
1.31e-86FFCP PHASE2:Mm9::chr19:10869146..10869168,-#_aa962170ee4a6abd9f15f1828b309188p@chr19:10869146..10869168, -
1.31e-86FFCP PHASE1:Mm9::chr4:151490126..151490137,+#_aa962170ee4a6abd9f15f1828b309188p3@Tnfrsf25
1.31e-86FFCP PHASE1:Mm9::chr4:32339511..32339518,+#_aa962170ee4a6abd9f15f1828b309188p@chr4:32339511..32339518, +
1.31e-86FFCP PHASE2:Mm9::chr11:99015330..99015341,-#_aa962170ee4a6abd9f15f1828b309188-, p@chr11:99015330..99015341
1.31e-86FFCP PHASE2:Mm9::chr6:48637679..48637692,+#_aa962170ee4a6abd9f15f1828b309188p@chr6:48637679..48637692, +
1.31e-86FFCP PHASE1:Mm9::chr6:48637679..48637692,+#_aa962170ee4a6abd9f15f1828b309188p@chr6:48637679..48637692, +
1.31e-86FFCP PHASE2:Mm9::chr14:54150421..54150439,+#_aa962170ee4a6abd9f15f1828b309188p1@uc007tsm.1
1.31e-86FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_aa962170ee4a6abd9f15f1828b309188p1@ENSMUST00000103733
1.31e-86FFCP PHASE2:Mm9::chr4:151490126..151490137,+#_aa962170ee4a6abd9f15f1828b309188p3@Tnfrsf25
1.31e-86FFCP PHASE2:Mm9::chr4:32339511..32339518,+#_aa962170ee4a6abd9f15f1828b309188p@chr4:32339511..32339518, +
1.31e-86FFCP PHASE1:Mm9::chr19:10869146..10869168,-#_aa962170ee4a6abd9f15f1828b309188p@chr19:10869146..10869168, -
1.31e-86FFCP PHASE1:Mm9::chr14:54150421..54150439,+#_aa962170ee4a6abd9f15f1828b309188p1@uc007tsm.1
1.31e-86FFCP PHASE1:Mm9::chr14:54831123..54831141,+#_aa962170ee4a6abd9f15f1828b309188p1@ENSMUST00000103733
2.98e-86FFCP PHASE2:Hg19::chr10:14611822..14611844,-#_df2710040254bdd14ebb689a22c349a1p@chr10:14611822..14611844, -
2.98e-86FFCP PHASE1:Hg19::chr10:14611822..14611844,-#_df2710040254bdd14ebb689a22c349a1p@chr10:14611822..14611844, -
3.57e-86FFCP PHASE1:Hg19::chr4:90205082..90205093,+#_2b919caa0cc131db00603efc6cf6eec6p@chr4:90205082..90205093, +
3.57e-86FFCP PHASE2:Hg19::chr4:90205082..90205093,+#_2b919caa0cc131db00603efc6cf6eec6p@chr4:90205082..90205093, +
9.89e-85FFCP PHASE2:Hg19::chr16:57162957..57162973,+#_34cbfd5e789bbe07242c0df533dbbc5fp@chr16:57162957..57162973, +
9.89e-85FFCP PHASE1:Hg19::chr16:57162957..57162973,+#_34cbfd5e789bbe07242c0df533dbbc5fp@chr16:57162957..57162973, +
1.01e-83FFCP PHASE1:Hg19::chr2:87053288..87053295,-#_939331a0ac358b2e1b73ca84422df189p@chr2:87053288..87053295, -
1.01e-83FFCP PHASE2:Hg19::chr2:87053288..87053295,-#_939331a0ac358b2e1b73ca84422df189p@chr2:87053288..87053295, -
1.1e-83FFCP PHASE1:Hg19::chr6:128299606..128299618,+#_840318736d7df227647c608701613975p@chr6:128299606..128299618, +
1.1e-83FFCP PHASE1:Hg19::chr11:122709344..122709378,+#_840318736d7df227647c608701613975p@chr11:122709344..122709378, +
1.1e-83FFCP PHASE2:Hg19::chr11:122709344..122709378,+#_840318736d7df227647c608701613975p@chr11:122709344..122709378, +
1.1e-83FFCP PHASE2:Hg19::chr6:128299606..128299618,+#_840318736d7df227647c608701613975p@chr6:128299606..128299618, +
1.69e-83FFCP PHASE2:Hg19::chr5:35780579..35780585,+#_2739ae6609522559a176bd49810e6abdp@chr5:35780579..35780585, +
1.69e-83FFCP PHASE1:Hg19::chr5:35780579..35780585,+#_2739ae6609522559a176bd49810e6abdp@chr5:35780579..35780585, +
1.02e-82FFCP PHASE1:Hg19::chr5:35859218..35859252,-#_71e5e8536e2f158099bb264f585fe4e6p@chr5:35859218..35859252, -
1.02e-82FFCP PHASE2:Hg19::chr5:35859218..35859252,-#_71e5e8536e2f158099bb264f585fe4e6p@chr5:35859218..35859252, -
1.33e-82FFCP PHASE2:Hg19::chr12:49375076..49375089,-#_105723773794f08f239db28c48cc4d83p@chr12:49375076..49375089, -
1.33e-82FFCP PHASE1:Hg19::chr12:49375076..49375089,-#_105723773794f08f239db28c48cc4d83p@chr12:49375076..49375089, -
3.02e-82FFCP PHASE1:Hg19::chr10:9060907..9060927,-#_4b35f9b5b833ebeb9705f5eb9751958cp@chr10:9060907..9060927, -
3.02e-82FFCP PHASE2:Hg19::chr10:9060907..9060927,-#_4b35f9b5b833ebeb9705f5eb9751958cp@chr10:9060907..9060927, -
4.05e-82FFCP PHASE2:Hg19::chr12:10561626..10561641,-#_445027bdacd018eda1b0d8bd9887d061p@chr12:10561626..10561641, -
4.05e-82FFCP PHASE1:Hg19::chr12:10561626..10561641,-#_445027bdacd018eda1b0d8bd9887d061p@chr12:10561626..10561641, -
4.31e-82FFCP PHASE1:Hg19::chr7:150178764..150178778,-#_0b6757c71fa82f953b7712d8dd71566ap@chr7:150178764..150178778, -
4.31e-82FFCP PHASE2:Hg19::chr7:150178764..150178778,-#_0b6757c71fa82f953b7712d8dd71566ap@chr7:150178764..150178778, -
5.81e-82FFCP PHASE2:Hg19::chr2:182038499..182038509,+#_9613d536073686b958f188f686f91259p@chr2:182038499..182038509, +
5.81e-82FFCP PHASE1:Hg19::chr2:182038499..182038509,+#_9613d536073686b958f188f686f91259p@chr2:182038499..182038509, +
1.02e-81FFCP PHASE1:Hg19::chr4:4271366..4271377,-#_fc7218fc4b7e641bd2fa36fce6692c0fp@chr4:4271366..4271377, -
1.02e-81FFCP PHASE2:Hg19::chr4:4271366..4271377,-#_fc7218fc4b7e641bd2fa36fce6692c0fp@chr4:4271366..4271377, -
8.22e-81FFCP PHASE2:Hg19::chr11:108094238..108094253,+#_90f5753969476e5fb23a7384c3cef2f2p10@ATM
8.22e-81FFCP PHASE1:Hg19::chr11:108094238..108094253,+#_90f5753969476e5fb23a7384c3cef2f2p10@ATM
2.22e-80FFCP PHASE1:Hg19::chr12:12867774..12867787,-#_1b2981962a9ab98268192a3473ecc694p@chr12:12867774..12867787, -
2.22e-80FFCP PHASE2:Hg19::chr12:12867774..12867787,-#_1b2981962a9ab98268192a3473ecc694p@chr12:12867774..12867787, -
8.6e-79FFCP PHASE1:Hg19::chr5:67571114..67571129,-#_bad98ea0bfd16cbc3f597a875499d71fp@chr5:67571114..67571129, -
8.6e-79FFCP PHASE2:Hg19::chr5:67571114..67571129,-#_bad98ea0bfd16cbc3f597a875499d71fp@chr5:67571114..67571129, -
2.3e-78FFCP PHASE2:Mm9::chr5:123440486..123440504,-#_fdac81d0c82941def06db73d5244beeap@chr5:123440486..123440504, -
2.3e-78FFCP PHASE1:Mm9::chr12:74704873..74704900,+#_fdac81d0c82941def06db73d5244beeap@chr12:74704873..74704900, +
2.3e-78FFCP PHASE1:Mm9::chr7:31935025..31935037,+#_fdac81d0c82941def06db73d5244beeap@chr7:31935025..31935037, +
2.3e-78FFCP PHASE1:Mm9::chr5:123440486..123440504,-#_fdac81d0c82941def06db73d5244beeap@chr5:123440486..123440504, -
2.3e-78FFCP PHASE2:Mm9::chr14:54811976..54811990,+#_fdac81d0c82941def06db73d5244beeap1@ENSMUST00000103714
2.3e-78FFCP PHASE2:Mm9::chr8:84082784..84082795,+#_fdac81d0c82941def06db73d5244beeap@chr8:84082784..84082795, +
2.3e-78FFCP PHASE2:Mm9::chr14:56207154..56207165,-#_fdac81d0c82941def06db73d5244beeap@chr14:56207154..56207165, -
2.3e-78FFCP PHASE1:Mm9::chr8:84082784..84082795,+#_fdac81d0c82941def06db73d5244beeap@chr8:84082784..84082795, +
2.3e-78FFCP PHASE2:Mm9::chr12:74704873..74704900,+#_fdac81d0c82941def06db73d5244beeap@chr12:74704873..74704900, +
2.3e-78FFCP PHASE1:Mm9::chr14:54811976..54811990,+#_fdac81d0c82941def06db73d5244beeap1@ENSMUST00000103714
2.3e-78FFCP PHASE1:Mm9::chr14:56207154..56207165,-#_fdac81d0c82941def06db73d5244beea-, p@chr14:56207154..56207165
2.3e-78FFCP PHASE2:Mm9::chr7:31935025..31935037,+#_fdac81d0c82941def06db73d5244beeap@chr7:31935025..31935037, +
2.56e-78FFCP PHASE2:Hg19::chr6:143228788..143228799,-#_99ff90eed1b944b82ff6e91b38012145p@chr6:143228788..143228799, -
2.56e-78FFCP PHASE1:Hg19::chr6:143228788..143228799,-#_99ff90eed1b944b82ff6e91b38012145p@chr6:143228788..143228799, -
2.82e-78FFCP PHASE2:Mm9::chr4:32422919..32422935,+#_977803ba7784ee3aa48de97499d69f2dp@chr4:32422919..32422935, +
2.82e-78FFCP PHASE1:Mm9::chr5:123440767..123440778,+#_977803ba7784ee3aa48de97499d69f2dp@chr5:123440767..123440778, +
2.82e-78FFCP PHASE2:Mm9::chr14:54838649..54838660,+#_977803ba7784ee3aa48de97499d69f2d+, p@chr14:54838649..54838660
2.82e-78FFCP PHASE2:Mm9::chr5:123440767..123440778,+#_977803ba7784ee3aa48de97499d69f2dp@chr5:123440767..123440778, +
2.82e-78FFCP PHASE1:Mm9::chr4:32422919..32422935,+#_977803ba7784ee3aa48de97499d69f2dp@chr4:32422919..32422935, +
2.82e-78FFCP PHASE1:Mm9::chr14:54838649..54838660,+#_977803ba7784ee3aa48de97499d69f2dp@chr14:54838649..54838660, +
3.46e-78FFCP PHASE2:Mm9::chr15:27786221..27786240,-#_7d1ba1edadb550f46e51983386a49963p@chr15:27786221..27786240, -
3.46e-78FFCP PHASE1:Mm9::chr15:27786221..27786240,-#_7d1ba1edadb550f46e51983386a49963p@chr15:27786221..27786240, -
4.25e-78FFCP PHASE2:Mm9::chr6:99215016..99215036,+#_5ba6feb498c10c80b01c50c531f83501p@chr6:99215016..99215036, +
4.25e-78FFCP PHASE1:Mm9::chr3:103672068..103672090,-#_5ba6feb498c10c80b01c50c531f83501p@chr3:103672068..103672090, -
4.25e-78FFCP PHASE2:Mm9::chr3:103672068..103672090,-#_5ba6feb498c10c80b01c50c531f83501p@chr3:103672068..103672090, -
4.25e-78FFCP PHASE1:Mm9::chr6:99215016..99215036,+#_5ba6feb498c10c80b01c50c531f83501p@chr6:99215016..99215036, +
5.22e-78FFCP PHASE2:Mm9::chr6:48634453..48634468,-#_3681775e305e5948fb2439a8f6439468p@chr6:48634453..48634468, -
5.22e-78FFCP PHASE1:Mm9::chr6:48634453..48634468,-#_3681775e305e5948fb2439a8f6439468p@chr6:48634453..48634468, -
6.45e-78FFCP PHASE2:Hg19::chr7:36816941..36816949,+#_deb06978ff4c8f16907139b342241761+, p@chr7:36816941..36816949
6.45e-78FFCP PHASE1:Hg19::chr7:36816941..36816949,+#_deb06978ff4c8f16907139b342241761p@chr7:36816941..36816949, +
7.86e-78FFCP PHASE2:Mm9::chr15:60018823..60018838,-#_f07e40d328f8820f86e930fdc2ffb104p5@uc007vxz.1
7.86e-78FFCP PHASE1:Mm9::chr15:60018823..60018838,-#_f07e40d328f8820f86e930fdc2ffb104p5@uc007vxz.1

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