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Difference between revisions of "CL:0002494"

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Line 13: Line 13:
 
|located_in=
 
|located_in=
 
|name=cardiocyte
 
|name=cardiocyte
|namespace=cell
+
|namespace=FANTOM
 
|obo_creation_date=2010-12-07T09:37:22Z
 
|obo_creation_date=2010-12-07T09:37:22Z
 
|part_of=UBERON:0007100
 
|part_of=UBERON:0007100

Latest revision as of 07:43, 12 September 2014

Name:cardiocyte
Namespace:FANTOM
Definition:"A cell located in the heart, including both muscle and non muscle cells." [GOC:tfm]
Xrefs:
links:

BTO:0001539
FMA:83808

FMA:84791
Synonyms: "heart cell" EXACT []
Comments:From Onard of the FMA: Cardiac muscle cell or cardiac myocyte is a striated muscle cell. Cardiocyte on the other hand is any cell in the heart which includes cells other than muscle cells (e.g. endothelial cell of endocardium). Unless there is a consensus among anatomists that cardiocytes refer only to muscle cells, we will treat them as a general class of cells in the heart.
Created by:tmeehan
Creation date:2010-12-07T09:37:22Z


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000548(animal cell),CL:0002371(somatic cell)
part_of:UBERON:0007100(primary circulatory organ)



Children


is a:CL:0000513 (cardiac muscle myoblast),CL:0000569 (cardiac mesenchymal cell),CL:0000746 (cardiac muscle cell),CL:0002548 (cardiac fibroblast),CL:0002592 (smooth muscle cell of the coronary artery)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002494 (cardiocyte), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.58e-86FFCP PHASE2:Mm9::chr9:56096674..56096680,+#_fc15e5ed66a0b93de2bfd8990e2d1542p@chr9:56096674..56096680, +
1.58e-86FFCP PHASE2:Mm9::chr19:20567096..20567107,+#_fc15e5ed66a0b93de2bfd8990e2d1542p3@E030003E18Rik
1.58e-86FFCP PHASE2:Mm9::chr7:106471695..106471701,+#_fc15e5ed66a0b93de2bfd8990e2d1542p@chr7:106471695..106471701, +
1.58e-86FFCP PHASE1:Mm9::chr9:56096674..56096680,+#_fc15e5ed66a0b93de2bfd8990e2d1542p@chr9:56096674..56096680, +
1.58e-86FFCP PHASE2:Mm9::chr9:102766842..102766853,+#_fc15e5ed66a0b93de2bfd8990e2d1542p@chr9:102766842..102766853, +
1.58e-86FFCP PHASE1:Mm9::chr9:102766842..102766853,+#_fc15e5ed66a0b93de2bfd8990e2d1542p@chr9:102766842..102766853, +
1.58e-86FFCP PHASE1:Mm9::chr19:20567096..20567107,+#_fc15e5ed66a0b93de2bfd8990e2d1542p3@E030003E18Rik
1.58e-86FFCP PHASE1:Mm9::chr7:106471695..106471701,+#_fc15e5ed66a0b93de2bfd8990e2d1542p@chr7:106471695..106471701, +
1.33e-65FFCP PHASE2:Mm9::chr6:91183204..91183213,+#_045442523cc2396832f43e86d89dd8e0p@chr6:91183204..91183213, +
1.33e-65FFCP PHASE1:Mm9::chr6:91183204..91183213,+#_045442523cc2396832f43e86d89dd8e0p@chr6:91183204..91183213, +
2.21e-65FFCP PHASE2:Mm9::chr19:20567153..20567160,+#_2715b49d4cbd8bd521a4beb039380ce3p7@E030003E18Rik
2.21e-65FFCP PHASE1:Mm9::chr19:20567153..20567160,+#_2715b49d4cbd8bd521a4beb039380ce3p7@E030003E18Rik
4.9e-53FFCP PHASE1:Mm9::chr6:91222464..91222477,+#_ab4b752acd4ac9d7ae69883d14091664p@chr6:91222464..91222477, +
4.9e-53FFCP PHASE1:Mm9::chr7:117772048..117772059,+#_ab4b752acd4ac9d7ae69883d14091664p@chr7:117772048..117772059, +
4.9e-53FFCP PHASE2:Mm9::chr19:20567067..20567078,+#_ab4b752acd4ac9d7ae69883d14091664p6@E030003E18Rik
4.9e-53FFCP PHASE1:Mm9::chr8:11239175..11239178,-#_ab4b752acd4ac9d7ae69883d14091664p@chr8:11239175..11239178, -
4.9e-53FFCP PHASE2:Mm9::chr3:103596528..103596539,-#_ab4b752acd4ac9d7ae69883d14091664p@chr3:103596528..103596539, -
4.9e-53FFCP PHASE2:Mm9::chr6:91222464..91222477,+#_ab4b752acd4ac9d7ae69883d14091664p@chr6:91222464..91222477, +
4.9e-53FFCP PHASE1:Mm9::chr19:20567067..20567078,+#_ab4b752acd4ac9d7ae69883d14091664p6@E030003E18Rik
4.9e-53FFCP PHASE2:Mm9::chr11:43827555..43827566,+#_ab4b752acd4ac9d7ae69883d14091664p@chr11:43827555..43827566, +
4.9e-53FFCP PHASE2:Mm9::chr8:11239175..11239178,-#_ab4b752acd4ac9d7ae69883d14091664p@chr8:11239175..11239178, -
4.9e-53FFCP PHASE1:Mm9::chr11:43827555..43827566,+#_ab4b752acd4ac9d7ae69883d14091664p@chr11:43827555..43827566, +
4.9e-53FFCP PHASE2:Mm9::chr7:117772048..117772059,+#_ab4b752acd4ac9d7ae69883d14091664p@chr7:117772048..117772059, +
4.9e-53FFCP PHASE1:Mm9::chr3:103596528..103596539,-#_ab4b752acd4ac9d7ae69883d14091664p@chr3:103596528..103596539, -
7.35e-53FFCP PHASE1:Mm9::chr5:30339923..30339935,+#_10952593b149d8ae0182eb9bfde15739p2@Il6
7.35e-53FFCP PHASE2:Mm9::chr5:30339923..30339935,+#_10952593b149d8ae0182eb9bfde15739p2@Il6
1.17e-52FFCP PHASE1:Hg19::chr7:81146338..81146341,-#_fa75392d22a67ec933afb4a923d6ae45p@chr7:81146338..81146341, -
1.17e-52FFCP PHASE2:Hg19::chr7:81146338..81146341,-#_fa75392d22a67ec933afb4a923d6ae45-, p@chr7:81146338..81146341
1.18e-44FFCP PHASE1:Mm9::chr19:20567168..20567179,+#_49fb28e6589b88aa20e061c95d2a0975p5@E030003E18Rik
1.18e-44FFCP PHASE2:Mm9::chr8:11449034..11449045,+#_49fb28e6589b88aa20e061c95d2a0975p@chr8:11449034..11449045, +
1.18e-44FFCP PHASE2:Mm9::chr19:20567168..20567179,+#_49fb28e6589b88aa20e061c95d2a0975p5@E030003E18Rik
1.18e-44FFCP PHASE1:Mm9::chr8:11449034..11449045,+#_49fb28e6589b88aa20e061c95d2a0975p@chr8:11449034..11449045, +
1.66e-44FFCP PHASE2:Mm9::chr11:61392754..61392766,-#_39b6200052580540b5d2d55ac3f70a3ap@chr11:61392754..61392766, -
1.66e-44FFCP PHASE1:Mm9::chr11:61392754..61392766,-#_39b6200052580540b5d2d55ac3f70a3ap@chr11:61392754..61392766, -
3.27e-44FFCP PHASE1:Mm9::chr3:103792260..103792309,+#_a45224ce47991acb431a08f0f2feabd9p@chr3:103792260..103792309, +
3.27e-44FFCP PHASE2:Mm9::chr3:103792260..103792309,+#_a45224ce47991acb431a08f0f2feabd9p@chr3:103792260..103792309, +
8.97e-44FFCP PHASE1:Mm9::chr5:93362343..93362363,+#_6b3c396e694cfff9f17008d7304b28a6p@chr5:93362343..93362363, +
8.97e-44FFCP PHASE2:Mm9::chr5:93362343..93362363,+#_6b3c396e694cfff9f17008d7304b28a6+, p@chr5:93362343..93362363
2.45e-43FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_e1bddb496671702e55a53b5fb8fb66bap@chrX:160838683..160838694, +
2.45e-43FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_e1bddb496671702e55a53b5fb8fb66bap@chrX:160838683..160838694, +
2.62e-42FFCP PHASE1:Hg19::chr17:77019002..77019027,+#_9a60058f517ffe12a1f58d227b3a383ep@chr17:77019002..77019027, +
2.62e-42FFCP PHASE2:Hg19::chr17:77019002..77019027,+#_9a60058f517ffe12a1f58d227b3a383ep@chr17:77019002..77019027, +
1.7e-39FFCP PHASE2:Mm9::chr8:125956526..125956533,-#_0795bb053bde50c6e9a8895d3a7a636fp@chr8:125956526..125956533, -
1.7e-39FFCP PHASE1:Mm9::chr8:125956526..125956533,-#_0795bb053bde50c6e9a8895d3a7a636fp@chr8:125956526..125956533, -
2.66e-39FFCP PHASE2:Mm9::chr8:125952865..125952872,-#_67a7e6d35cf1e912d8bddf3e98132cccp@chr8:125952865..125952872, -
2.66e-39FFCP PHASE1:Mm9::chr8:125952865..125952872,-#_67a7e6d35cf1e912d8bddf3e98132ccc-, p@chr8:125952865..125952872
2.66e-39FFCP PHASE2:Mm9::chr15:76984103..76984104,-#_67a7e6d35cf1e912d8bddf3e98132cccp18@Rbfox2
2.66e-39FFCP PHASE1:Mm9::chr15:76984103..76984104,-#_67a7e6d35cf1e912d8bddf3e98132cccp18@Rbfox2
4.15e-39FFCP PHASE1:Mm9::chr7:117927007..117927010,+#_66f4bb4f9118f49871cc6fbc400ca60dp@chr7:117927007..117927010, +
4.15e-39FFCP PHASE1:Mm9::chr6:91202567..91202570,+#_66f4bb4f9118f49871cc6fbc400ca60dp@chr6:91202567..91202570, +
4.15e-39FFCP PHASE2:Mm9::chr7:117927007..117927010,+#_66f4bb4f9118f49871cc6fbc400ca60dp@chr7:117927007..117927010, +
4.15e-39FFCP PHASE2:Mm9::chr6:91202567..91202570,+#_66f4bb4f9118f49871cc6fbc400ca60dp@chr6:91202567..91202570, +
1.17e-38FFCP PHASE2:Mm9::chr6:91184012..91184021,+#_818f001efdbbe78ad11605ba314b2519p@chr6:91184012..91184021, +
1.17e-38FFCP PHASE1:Mm9::chr6:91184012..91184021,+#_818f001efdbbe78ad11605ba314b2519p@chr6:91184012..91184021, +
1.56e-38FFCP PHASE2:Mm9::chr16:58465599..58465600,+#_2aac025b83e1e32b13f1251ddfefdf3dp@chr16:58465599..58465600, +
1.56e-38FFCP PHASE1:Mm9::chr16:58465599..58465600,+#_2aac025b83e1e32b13f1251ddfefdf3dp@chr16:58465599..58465600, +
2.79e-38FFCP PHASE2:Mm9::chr4:141154145..141154160,-#_5912689644d4f9237ad2801527a5b6f4p6@Fblim1
2.79e-38FFCP PHASE1:Mm9::chr4:141154145..141154160,-#_5912689644d4f9237ad2801527a5b6f4p6@Fblim1
3.73e-38FFCP PHASE1:Mm9::chr3:54920096..54920117,+#_ee36f12f6eedd012ae6a8c3cdb9daa6ap7@Spg20
3.73e-38FFCP PHASE2:Mm9::chr3:54920096..54920117,+#_ee36f12f6eedd012ae6a8c3cdb9daa6ap7@Spg20
6.0e-38FFCP PHASE2:Hg19::chr17:10195132..10195137,+#_5e5eb212cecf5fd6e2c8a19df12c288ap@chr17:10195132..10195137, +
6.0e-38FFCP PHASE1:Hg19::chr17:10195132..10195137,+#_5e5eb212cecf5fd6e2c8a19df12c288ap@chr17:10195132..10195137, +
6.64e-38FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_48c96e11312797c5996d9329f0e61ceap@chr12:105433069..105433075, -
6.64e-38FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_48c96e11312797c5996d9329f0e61ceap@chr12:105433069..105433075, -
8.86e-38FFCP PHASE2:Mm9::chr18:61220910..61220912,+#_38f703434e0b2c4e141065256e049bf4p@chr18:61220910..61220912, +
8.86e-38FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_38f703434e0b2c4e141065256e049bf4p@chrX:65748600..65748616, +
8.86e-38FFCP PHASE1:Mm9::chr18:61220910..61220912,+#_38f703434e0b2c4e141065256e049bf4p@chr18:61220910..61220912, +
8.86e-38FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_38f703434e0b2c4e141065256e049bf4p@chrX:65748600..65748616, +
2.24e-37FFCP PHASE2:Hg19::chr17:77018953..77018966,+#_b9bde35e9c6ded55ffc3dc5c48ff0322p@chr17:77018953..77018966, +
2.24e-37FFCP PHASE1:Hg19::chr17:77018953..77018966,+#_b9bde35e9c6ded55ffc3dc5c48ff0322p@chr17:77018953..77018966, +
1.36e-34FFCP PHASE2:Hg19::chr14:61929948..61929975,+#_e87fefc6de0893384afcddfe7e0b7714p20@PRKCH
1.36e-34FFCP PHASE1:Hg19::chr14:61929948..61929975,+#_e87fefc6de0893384afcddfe7e0b7714p20@PRKCH
3.67e-34FFCP PHASE1:Mm9::chr6:91222095..91222107,+#_30258a656b3441e0f2e59623c037f2afp@chr6:91222095..91222107, +
3.67e-34FFCP PHASE1:Mm9::chr7:19425360..19425369,+#_30258a656b3441e0f2e59623c037f2afp2@Mill2
3.67e-34FFCP PHASE2:Mm9::chr6:91222095..91222107,+#_30258a656b3441e0f2e59623c037f2afp@chr6:91222095..91222107, +
3.67e-34FFCP PHASE2:Mm9::chr6:91183490..91183501,+#_30258a656b3441e0f2e59623c037f2afp@chr6:91183490..91183501, +
3.67e-34FFCP PHASE2:Mm9::chr7:19425360..19425369,+#_30258a656b3441e0f2e59623c037f2afp2@Mill2
3.67e-34FFCP PHASE1:Mm9::chr6:91183490..91183501,+#_30258a656b3441e0f2e59623c037f2afp@chr6:91183490..91183501, +
7.89e-34FFCP PHASE1:Mm9::chr5:137542830..137542841,-#_cb82a4638c7190c39596db257139d96ap@chr5:137542830..137542841, -
7.89e-34FFCP PHASE2:Mm9::chr5:137542830..137542841,-#_cb82a4638c7190c39596db257139d96ap@chr5:137542830..137542841, -
8.46e-34FFCP PHASE1:Hg19::chr2:169938317..169938331,+#_7888a182af89d7b3e678c5a575ea1786p3@DHRS9
8.46e-34FFCP PHASE2:Hg19::chr2:169938317..169938331,+#_7888a182af89d7b3e678c5a575ea1786p3@DHRS9
3.61e-33FFCP PHASE2:Mm9::chr5:77778263..77778301,+#_1bcd757f7450b0e0c6b9bed66263afbbp@chr5:77778263..77778301, +
3.61e-33FFCP PHASE2:Mm9::chr11:81849982..81850000,+#_1bcd757f7450b0e0c6b9bed66263afbbp@chr11:81849982..81850000, +
3.61e-33FFCP PHASE1:Mm9::chr5:77778263..77778301,+#_1bcd757f7450b0e0c6b9bed66263afbb+, p@chr5:77778263..77778301
3.61e-33FFCP PHASE1:Mm9::chr11:81849982..81850000,+#_1bcd757f7450b0e0c6b9bed66263afbbp@chr11:81849982..81850000, +
5.97e-33FFCP PHASE2:Mm9::chr16:37834682..37834693,+#_2491fdd83f0ae71665f7023b4a75eb7bp@chr16:37834682..37834693, +
5.97e-33FFCP PHASE1:Mm9::chr16:37834682..37834693,+#_2491fdd83f0ae71665f7023b4a75eb7bp@chr16:37834682..37834693, +
7.68e-33FFCP PHASE1:Mm9::chr13:5863732..5863743,+#_90bd6975db81df7e2e126ed0ed1a95b8p@chr13:5863732..5863743, +
7.68e-33FFCP PHASE2:Mm9::chr3:88420206..88420215,+#_90bd6975db81df7e2e126ed0ed1a95b8p18@Arhgef2
7.68e-33FFCP PHASE2:Mm9::chr13:5863732..5863743,+#_90bd6975db81df7e2e126ed0ed1a95b8p@chr13:5863732..5863743, +
7.68e-33FFCP PHASE1:Mm9::chr3:88420206..88420215,+#_90bd6975db81df7e2e126ed0ed1a95b8p18@Arhgef2
1.0e-30FFCP PHASE2:Hg19::chr17:77018898..77018919,+#_5e92c6490346bec20758bc2a5b0f98f7p@chr17:77018898..77018919, +
1.0e-30FFCP PHASE1:Hg19::chr17:77018898..77018919,+#_5e92c6490346bec20758bc2a5b0f98f7p@chr17:77018898..77018919, +
1.16e-30FFCP PHASE2:Mm9::chr3:103596496..103596513,-#_5c35b8e126e999c8c7f68ac27371fa14p@chr3:103596496..103596513, -
1.16e-30FFCP PHASE1:Mm9::chr3:103596496..103596513,-#_5c35b8e126e999c8c7f68ac27371fa14p@chr3:103596496..103596513, -
1.16e-30FFCP PHASE1:Mm9::chrX:130443013..130443020,+#_5c35b8e126e999c8c7f68ac27371fa14p6@Srpx2
1.16e-30FFCP PHASE2:Mm9::chrX:130443013..130443020,+#_5c35b8e126e999c8c7f68ac27371fa14p6@Srpx2
1.46e-30FFCP PHASE2:Mm9::chr6:91220024..91220048,+#_149ec9da5c9f9904b0055a411eefe372p@chr6:91220024..91220048, +
1.46e-30FFCP PHASE1:Mm9::chr6:91220024..91220048,+#_149ec9da5c9f9904b0055a411eefe372p@chr6:91220024..91220048, +