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CL:0002620

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Name:skin fibroblast
Namespace:FANTOM
Definition:"A fibroblast of skin." [GOC:tfm]
Xrefs:
links:
BTO:0001255
Created by:tmeehan
Creation date:2011-03-14T12:31:49Z


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000057(fibroblast)
part_of:UBERON:0002097(skin of body)



Children


is a:CL:0002551 (fibroblast of dermis),FF:10600-108E6 (myxofibrosarcoma cell line:MFH-ino),FF:10684-109E9 (myxofibrosarcoma cell line:NMFH-1)
derives from:FF:0000250 (human fibroblast of skin sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002620 (skin fibroblast), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.28e-79FFCP PHASE2:Hg19::chr13:24044200..24044211,+#_69afc2362cd47caecbac35b4ed413c82p2@LINC00327
5.28e-79FFCP PHASE1:Hg19::chr13:24044200..24044211,+#_69afc2362cd47caecbac35b4ed413c82p2@LINC00327
8.25e-75FFCP PHASE1:Hg19::chr4:184271970..184271992,-#_cd8e8a4d931ee4d2f547bee29ae9a459p@chr4:184271970..184271992, -
8.25e-75FFCP PHASE2:Hg19::chr4:184271970..184271992,-#_cd8e8a4d931ee4d2f547bee29ae9a459p@chr4:184271970..184271992, -
3.0e-69FFCP PHASE1:Hg19::chr22:48819856..48819861,+#_b2137156d4ec73abfc39c5cea573d675p@chr22:48819856..48819861, +
3.0e-69FFCP PHASE2:Hg19::chr22:48819856..48819861,+#_b2137156d4ec73abfc39c5cea573d675p@chr22:48819856..48819861, +
1.73e-68FFCP PHASE2:Hg19::chr13:24044226..24044237,+#_d902ba5ca429526dffcbef1afb960859p1@LINC00327
1.73e-68FFCP PHASE1:Hg19::chr13:24044226..24044237,+#_d902ba5ca429526dffcbef1afb960859p1@LINC00327
2.25e-64FFCP PHASE2:Hg19::chr15:33180498..33180522,-#_f9ac078cc1bca3493594eed3e11b7270p4@FMN1
2.25e-64FFCP PHASE1:Hg19::chr15:33180498..33180522,-#_f9ac078cc1bca3493594eed3e11b7270p4@FMN1
2.96e-62FFCP PHASE2:Hg19::chr1:197886772..197886790,+#_b0b5a9a6b40943104228f92fc176d479p4@LHX9
2.96e-62FFCP PHASE1:Hg19::chr1:197886772..197886790,+#_b0b5a9a6b40943104228f92fc176d479p4@LHX9
5.44e-61FFCP PHASE2:Hg19::chr1:198636258..198636278,-#_8978a4c66efa2ddfcabe07d5d64f80aep1@ENST00000413577
5.44e-61FFCP PHASE1:Hg19::chr1:198636258..198636278,-#_8978a4c66efa2ddfcabe07d5d64f80aep1@ENST00000413577
6.11e-60FFCP PHASE2:Hg19::chr15:33180622..33180633,-#_f6186c532842ecfaac0dae0a397c04f2p13@FMN1
6.11e-60FFCP PHASE1:Hg19::chr15:33180622..33180633,-#_f6186c532842ecfaac0dae0a397c04f2p13@FMN1
1.75e-59FFCP PHASE2:Hg19::chr1:198636234..198636246,-#_c7732738dcaec016d870c8dd9f28df0dp2@ENST00000413577
1.75e-59FFCP PHASE1:Hg19::chr1:198636234..198636246,-#_c7732738dcaec016d870c8dd9f28df0dp2@ENST00000413577
2.81e-57FFCP PHASE2:Hg19::chr15:33180558..33180570,-#_c28a75961c4aae95731c5cebbfe0ad80p9@FMN1
2.81e-57FFCP PHASE1:Hg19::chr15:33180558..33180570,-#_c28a75961c4aae95731c5cebbfe0ad80p9@FMN1
2.16e-56FFCP PHASE2:Hg19::chr14:38371323..38371347,-#_7493c8669eb0c36ca97f0cda106c009ep1@ENST00000554257, p1@uc001wuk.1
2.16e-56FFCP PHASE1:Hg19::chr14:38371323..38371347,-#_7493c8669eb0c36ca97f0cda106c009ep1@ENST00000554257, p1@uc001wuk.1
4.55e-54FFCP PHASE2:Hg19::chr1:197886421..197886432,+#_4f7c584d9e862267162b1ef34b4753b0p2@LHX9
4.55e-54FFCP PHASE1:Hg19::chr1:197886421..197886432,+#_4f7c584d9e862267162b1ef34b4753b0p2@LHX9
1.36e-53FFCP PHASE2:Hg19::chr14:32963433..32963487,+#_c953bf70d92f8a474143de9870054b04p4@AKAP6
1.36e-53FFCP PHASE1:Hg19::chr14:32963433..32963487,+#_c953bf70d92f8a474143de9870054b04p4@AKAP6
1.37e-52FFCP PHASE1:Hg19::chr1:198636401..198636419,-#_c570acd66874668ecccc5c4b0cd4e4d1p3@ENST00000413577
1.37e-52FFCP PHASE2:Hg19::chr1:198636401..198636419,-#_c570acd66874668ecccc5c4b0cd4e4d1p3@ENST00000413577
5.26e-49FFCP PHASE1:Hg19::chr12:88813132..88813143,-#_56d09f05117b8118ff98c3197af05fefp@chr12:88813132..88813143, -
5.26e-49FFCP PHASE2:Hg19::chr12:88813132..88813143,-#_56d09f05117b8118ff98c3197af05fefp@chr12:88813132..88813143, -
7.25e-49FFCP PHASE2:Hg19::chr1:197886646..197886657,+#_1cd0258c217401b843e0ad72f2f97396p5@LHX9
7.25e-49FFCP PHASE1:Hg19::chr1:197886646..197886657,+#_1cd0258c217401b843e0ad72f2f97396p5@LHX9
8.98e-46FFCP PHASE1:Hg19::chr6:140893217..140893243,-#_bf35dbb9eb6141f914b3bddba9cfad04p@chr6:140893217..140893243, -
8.98e-46FFCP PHASE2:Hg19::chr6:140893217..140893243,-#_bf35dbb9eb6141f914b3bddba9cfad04p@chr6:140893217..140893243, -
3.79e-45FFCP PHASE2:Hg19::chr5:167087144..167087148,-#_8ae8414b1dfd3401f8aa89b3633f03efp1@ENST00000522956
3.79e-45FFCP PHASE1:Hg19::chr5:167087144..167087148,-#_8ae8414b1dfd3401f8aa89b3633f03efp1@ENST00000522956
2.97e-44FFCP PHASE2:Hg19::chr3:58021410..58021424,+#_8aeb73aefc29f37a787af1072c3da5acp@chr3:58021410..58021424, +
2.97e-44FFCP PHASE1:Hg19::chr3:58021410..58021424,+#_8aeb73aefc29f37a787af1072c3da5acp@chr3:58021410..58021424, +
1.0e-42FFCP PHASE1:Hg19::chr21:28336890..28336913,-#_2111c8b682f7ad59a124dc4d3000ad86p@chr21:28336890..28336913, -
1.0e-42FFCP PHASE2:Hg19::chr21:28336890..28336913,-#_2111c8b682f7ad59a124dc4d3000ad86p@chr21:28336890..28336913, -
1.22e-42FFCP PHASE1:Hg19::chr1:115782479..115782490,+#_c749acfcae969b7da29577b63e40cdf5p@chr1:115782479..115782490, +
1.22e-42FFCP PHASE2:Hg19::chr1:115782479..115782490,+#_c749acfcae969b7da29577b63e40cdf5p@chr1:115782479..115782490, +
1.99e-42FFCP PHASE2:Hg19::chr6:113697400..113697411,-#_97dadb064a408429d36f71e4b6314f62p@chr6:113697400..113697411, -
1.99e-42FFCP PHASE1:Hg19::chr6:113697400..113697411,-#_97dadb064a408429d36f71e4b6314f62p@chr6:113697400..113697411, -
2.44e-42FFCP PHASE2:Hg19::chr1:197886665..197886732,+#_0c2fc39607609f025da789e390f82381p3@LHX9
2.44e-42FFCP PHASE1:Hg19::chr1:197886665..197886732,+#_0c2fc39607609f025da789e390f82381p3@LHX9
2.91e-42FFCP PHASE2:Hg19::chr8:23564380..23564391,+#_520414c9276135e7228357afd8136b30p1@ENST00000523874
2.91e-42FFCP PHASE1:Hg19::chr8:23564380..23564391,+#_520414c9276135e7228357afd8136b30p1@ENST00000523874
2.41e-40FFCP PHASE1:Hg19::chr17:1936721..1936751,+#_b0982d3b72cfa8c5931aa914d64142c8p3@DPH1
2.41e-40FFCP PHASE2:Hg19::chr17:1936721..1936751,+#_b0982d3b72cfa8c5931aa914d64142c8p3@DPH1
1.09e-39FFCP PHASE2:Hg19::chr6:113697548..113697566,-#_5582a90f4a40af6b9a7f7947fccfbc23p@chr6:113697548..113697566, -
1.09e-39FFCP PHASE1:Hg19::chr6:113697548..113697566,-#_5582a90f4a40af6b9a7f7947fccfbc23p@chr6:113697548..113697566, -
1.11e-38FFCP PHASE2:Hg19::chr5:167181769..167181798,+#_16018e8b0f0d1fa1016651cad49e903ep17@ODZ2
1.11e-38FFCP PHASE1:Hg19::chr5:167181769..167181798,+#_16018e8b0f0d1fa1016651cad49e903ep17@ODZ2
2.23e-38FFCP PHASE1:Hg19::chr2:239778648..239778664,+#_1aaf30f0667990e5d86fa4f6d3bba673+, p@chr2:239778648..239778664
2.23e-38FFCP PHASE2:Hg19::chr2:239778648..239778664,+#_1aaf30f0667990e5d86fa4f6d3bba673p@chr2:239778648..239778664, +
2.45e-38FFCP PHASE2:Hg19::chr18:52969844..52969895,-#_d91689a2f8c92d7b9e80817ddcce6f04p27@TCF4
2.45e-38FFCP PHASE1:Hg19::chr18:52969844..52969895,-#_d91689a2f8c92d7b9e80817ddcce6f04p27@TCF4
2.79e-38FFCP PHASE2:Hg19::chr12:51986236..51986261,-#_d9b8defca948366a8339cbb4687387dep@chr12:51986236..51986261, -
2.79e-38FFCP PHASE1:Hg19::chr12:51986236..51986261,-#_d9b8defca948366a8339cbb4687387dep@chr12:51986236..51986261, -
4.55e-38FFCP PHASE2:Hg19::chr1:197889151..197889159,+#_2c9a4fd4fe2d3126a49745e3756700ffp@chr1:197889151..197889159, +
4.55e-38FFCP PHASE1:Hg19::chr1:197889151..197889159,+#_2c9a4fd4fe2d3126a49745e3756700ffp@chr1:197889151..197889159, +
6.71e-38FFCP PHASE2:Hg19::chr5:167148342..167148357,+#_ca4c98027ab9d92e8b66b134e1c52d66p1@ENST00000517346
6.71e-38FFCP PHASE1:Hg19::chr5:167148342..167148357,+#_ca4c98027ab9d92e8b66b134e1c52d66p1@ENST00000517346
7.92e-38FFCP PHASE2:Hg19::chr2:36784074..36784084,-#_ffd70640dbbbfebd12a948c7fcd57baap@chr2:36784074..36784084, -
7.92e-38FFCP PHASE1:Hg19::chr2:36784074..36784084,-#_ffd70640dbbbfebd12a948c7fcd57baap@chr2:36784074..36784084, -
1.37e-37FFCP PHASE2:Hg19::chr7:84122019..84122030,-#_e16fecf353bc522a2fdd00bc28a7cd77p18@SEMA3A
1.37e-37FFCP PHASE1:Hg19::chr7:84122019..84122030,-#_e16fecf353bc522a2fdd00bc28a7cd77p18@SEMA3A
4.82e-37FFCP PHASE1:Hg19::chr7:84121947..84121959,-#_d746fb8c7beef84e3bf5779e87903871p12@SEMA3A
4.82e-37FFCP PHASE2:Hg19::chr7:84121947..84121959,-#_d746fb8c7beef84e3bf5779e87903871p12@SEMA3A
7.5e-37FFCP PHASE2:Hg19::chr6:140985056..140985096,-#_47aaf88e53509cfce95695be288e6ec9p@chr6:140985056..140985096, -
7.5e-37FFCP PHASE1:Hg19::chr6:140985056..140985096,-#_47aaf88e53509cfce95695be288e6ec9p@chr6:140985056..140985096, -
3.48e-36FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_701b99e97742ccb3becb05bf50d0bac3p12@FBN2
3.48e-36FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_701b99e97742ccb3becb05bf50d0bac3p12@FBN2
4.93e-36FFCP PHASE1:Hg19::chr9:132472174..132472192,+#_8e7124899f4cedb184d813bad9ab5091p@chr9:132472174..132472192, +
4.93e-36FFCP PHASE2:Hg19::chr9:132472174..132472192,+#_8e7124899f4cedb184d813bad9ab5091p@chr9:132472174..132472192, +
5.38e-36FFCP PHASE2:Hg19::chr12:88801610..88801614,-#_77ca711afa49f2cbcf4ac81561145603p@chr12:88801610..88801614, -
5.38e-36FFCP PHASE1:Hg19::chr12:88801610..88801614,-#_77ca711afa49f2cbcf4ac81561145603p@chr12:88801610..88801614, -
6.14e-36FFCP PHASE1:Hg19::chr19:43690649..43690663,-#_507ebea4dac706786ca541444475579dp2@PSG5
6.14e-36FFCP PHASE2:Hg19::chr19:43690649..43690663,-#_507ebea4dac706786ca541444475579dp2@PSG5
6.47e-36FFCP PHASE1:Hg19::chr1:240256439..240256449,-#_2fed3581c12e17157ee2c7a59c7f951bp@chr1:240256439..240256449, -
6.47e-36FFCP PHASE2:Hg19::chr1:240256439..240256449,-#_2fed3581c12e17157ee2c7a59c7f951bp@chr1:240256439..240256449, -
1.33e-35FFCP PHASE1:Hg19::chr1:240448610..240448624,+#_dc28cd5b99edadcd55d944507297a01d+, p@chr1:240448610..240448624
1.33e-35FFCP PHASE2:Hg19::chr1:240448610..240448624,+#_dc28cd5b99edadcd55d944507297a01dp@chr1:240448610..240448624, +
1.4e-35FFCP PHASE1:Hg19::chr12:88813089..88813098,-#_ef11bf1f117cfe02e0a394cda0aa13c0p@chr12:88813089..88813098, -
1.4e-35FFCP PHASE2:Hg19::chr12:88813089..88813098,-#_ef11bf1f117cfe02e0a394cda0aa13c0p@chr12:88813089..88813098, -
1.9e-35FFCP PHASE1:Hg19::chr18:52969674..52969685,-#_e9de429d3eed22246d7f7f87f9c15599p24@TCF4
1.9e-35FFCP PHASE2:Hg19::chr18:52969674..52969685,-#_e9de429d3eed22246d7f7f87f9c15599p24@TCF4
2.59e-35FFCP PHASE2:Hg19::chr11:26210383..26210402,+#_141453d787595b7ce6c7325fda9d87f6p2@ENST00000531798
2.59e-35FFCP PHASE1:Hg19::chr11:26210383..26210402,+#_141453d787595b7ce6c7325fda9d87f6p2@ENST00000531798
4.99e-35FFCP PHASE1:Hg19::chr9:81628797..81628811,+#_84d4b40b97b8da6eced55622a6d00dfbp@chr9:81628797..81628811, +
4.99e-35FFCP PHASE2:Hg19::chr9:81628797..81628811,+#_84d4b40b97b8da6eced55622a6d00dfbp@chr9:81628797..81628811, +
5.16e-35FFCP PHASE2:Hg19::chr15:33180439..33180446,-#_a45b57ab60b5c7de72ef440967eff552p@chr15:33180439..33180446, -
5.16e-35FFCP PHASE1:Hg19::chr15:33180439..33180446,-#_a45b57ab60b5c7de72ef440967eff552p@chr15:33180439..33180446, -
8.83e-35FFCP PHASE2:Hg19::chr4:127876558..127876592,-#_4608ae14af56fa251a349b97372df9f5p1@ENST00000515428
8.83e-35FFCP PHASE1:Hg19::chr4:127876558..127876592,-#_4608ae14af56fa251a349b97372df9f5p1@ENST00000515428
1.85e-34FFCP PHASE2:Hg19::chr8:19171231..19171238,+#_c7bac506568a3163efbac96c07e72a54p7@SH2D4A
1.85e-34FFCP PHASE1:Hg19::chr8:19171231..19171238,+#_c7bac506568a3163efbac96c07e72a54p7@SH2D4A
2.29e-34FFCP PHASE1:Hg19::chr11:121972578..121972593,-#_401ae3ac1835f350349dc8815c9ee6f9p3@ENST00000530955
2.29e-34FFCP PHASE2:Hg19::chr11:121972578..121972593,-#_401ae3ac1835f350349dc8815c9ee6f9p3@ENST00000530955