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Difference between revisions of "Coexpression cluster:C160"

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|ontology_enrichment_celltype=
 
|ontology_enrichment_celltype=
 
|ontology_enrichment_disease=
 
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0007023!5.15e-42!115;UBERON:0005743!5.43e-37!86;UBERON:0001017!1.91e-34!82;UBERON:0000073!4.65e-34!94;UBERON:0001016!4.65e-34!94;UBERON:0001049!1.20e-31!57;UBERON:0005068!1.20e-31!57;UBERON:0006241!1.20e-31!57;UBERON:0007135!1.20e-31!57;UBERON:0002346!9.21e-31!90;UBERON:0003075!1.76e-30!86;UBERON:0007284!1.76e-30!86;UBERON:0000955!1.68e-29!69;UBERON:0006238!1.68e-29!69;UBERON:0002616!9.13e-28!59;UBERON:0000924!1.23e-27!173;UBERON:0006601!1.23e-27!173;UBERON:0004121!4.63e-27!169;UBERON:0000033!7.02e-25!123;UBERON:0000153!7.97e-25!129;UBERON:0007811!7.97e-25!129;UBERON:0003056!5.46e-24!61;UBERON:0002780!1.03e-23!41;UBERON:0001890!1.03e-23!41;UBERON:0006240!1.03e-23!41;UBERON:0003080!1.48e-23!42;UBERON:0002020!2.28e-19!34;UBERON:0003528!2.28e-19!34;UBERON:0001893!2.28e-19!34;UBERON:0002791!8.07e-19!33;UBERON:0001869!4.39e-18!32;UBERON:0000062!1.03e-17!511;UBERON:0000475!1.75e-16!365;UBERON:0000481!1.87e-16!347;UBERON:0000956!2.90e-14!25;UBERON:0000203!2.90e-14!25;UBERON:0000468!7.32e-14!659;UBERON:0002619!7.44e-14!22;UBERON:0000064!1.02e-13!219;UBERON:0001950!1.34e-12!20;UBERON:0000483!2.86e-11!309;UBERON:0000119!3.04e-11!312;UBERON:0000467!4.21e-11!625;UBERON:0000480!7.50e-11!626;UBERON:0000922!8.52e-11!612;UBERON:0004111!2.04e-10!241;UBERON:0000025!4.47e-10!194;UBERON:0000477!1.05e-09!286;UBERON:0003076!3.69e-09!15;UBERON:0003057!3.69e-09!15;UBERON:0002050!5.37e-09!605;UBERON:0005423!5.37e-09!605;UBERON:0000923!9.66e-09!604;UBERON:0005291!9.66e-09!604;UBERON:0006598!9.66e-09!604;UBERON:0002532!9.66e-09!604;UBERON:0004732!6.53e-08!13;UBERON:0004733!2.29e-07!12;UBERON:0002028!2.29e-07!12;UBERON:0007277!2.29e-07!12;UBERON:0005177!3.90e-07!107
+
|ontology_enrichment_uberon=UBERON:0001896!5.53e-47!3;UBERON:0005290!5.53e-47!3;UBERON:0010096!5.53e-47!3;UBERON:0001905!2.97e-31!2;UBERON:0002757!2.97e-31!2;UBERON:0010134!2.97e-31!2;UBERON:0005408!2.97e-31!2;UBERON:0001899!2.97e-31!2;UBERON:0002298!6.70e-24!6;UBERON:0000073!3.36e-22!53;UBERON:0002616!3.36e-22!53;UBERON:0001017!2.67e-21!81;UBERON:0001049!5.38e-21!56;UBERON:0005068!5.38e-21!56;UBERON:0006241!5.38e-21!56;UBERON:0007135!5.38e-21!56;UBERON:0000955!6.26e-21!68;UBERON:0006238!6.26e-21!68;UBERON:0001894!4.19e-20!7;UBERON:0006222!4.19e-20!7;UBERON:0001016!4.00e-19!89;UBERON:0007023!2.81e-18!114;UBERON:0003075!1.44e-17!82;UBERON:0007284!1.44e-17!82;UBERON:0002336!6.47e-17!1;UBERON:0011215!6.47e-17!1;UBERON:0001018!6.47e-17!1;UBERON:0002473!6.47e-17!1;UBERON:0005340!6.47e-17!1;UBERON:0003544!6.47e-17!1;UBERON:0005970!6.47e-17!1;UBERON:0002316!6.47e-17!1;UBERON:0001020!6.47e-17!1;UBERON:0002437!6.47e-17!1;UBERON:0002346!1.02e-16!86;UBERON:0003296!3.59e-16!4;UBERON:0010133!3.59e-16!4;UBERON:0002784!3.59e-16!4;UBERON:0010371!1.07e-13!104;UBERON:0002780!7.30e-13!41;UBERON:0001890!7.30e-13!41;UBERON:0003080!7.30e-13!41;UBERON:0006240!7.30e-13!41;UBERON:0004733!2.75e-12!12;UBERON:0002028!2.75e-12!12;UBERON:0007277!2.75e-12!12;UBERON:0003056!1.25e-11!61;UBERON:0004121!1.34e-11!171;UBERON:0000924!1.34e-11!171;UBERON:0006601!1.34e-11!171;UBERON:0004732!2.18e-11!13;UBERON:0010314!1.30e-10!132;UBERON:0003076!6.02e-10!15;UBERON:0003057!6.02e-10!15;UBERON:0005162!4.02e-09!2;UBERON:0000122!4.02e-09!2;UBERON:0001954!4.34e-09!2;UBERON:0003022!4.34e-09!2;UBERON:0002421!4.34e-09!2;UBERON:0002600!4.34e-09!2;UBERON:0002360!4.70e-09!2;UBERON:0000094!4.70e-09!2;UBERON:0010743!4.70e-09!2;UBERON:0011216!4.22e-07!223
 
|tf_chipseq_enrich=POU5F1#5460;4:12.309695466125:0.000339307668539759:0.00344985918950778
 
|tf_chipseq_enrich=POU5F1#5460;4:12.309695466125:0.000339307668539759:0.00344985918950778
 
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81276,0.517545,0.908877,0.112174,0.917504,0.999992,0.12531,0.999997,0.978875,0.181959,0.000114301,0.0463024,0.991322,0.40785,0.985519,0.857512,0.284235,1,0.817184,0.762983,0.964028,0.872094,0.0133284,0.733678,0.398251,0.775427,0.144602,0.80489,0.520992,0.983057,0.943684,0.815698,0.376008,0.31487,0.999024,0.0010214,0.0115965,0.0755776,0.00449157,0.253052,0.999999,0.961189,0.25887,0.297779,0.997863,0.759414,0.560594,0.789918,0.993262,0.963444,1,0.998124,0.575841,0.0912558,0.845112,0.673482,0.942313,0.97192,0.209714,0.71566,0.000660858,0.948514,1,0.84064,0.282279,0.0489487,0.99007,0.0958685,0.181921,1,0.365028,0.528672,0.999707,0.081635,0.550821,0.0424028,0.93201,0.811543,0.275051,0.146686,0.717253,0.549341,1,1,0.999776,0.788007,0.59786,0.249563,0.984747,0.549241,0.880173,0.458793,0.320415,0.816918,0.985634,0.929173,0.902197,0.722034,0.752399,0.0383964,0.812326,0.866503,0.000204728,0.283039,0.0899731,0.910479,0.20721,0.0660479,0.964525,0.547358,0.993771,0.555346,0.172242,0.99987,0.350272,0.201885,0.912911,0.744521,0.389389,0.0899047,0.506763,0.0365071,1,0.984805,0.753269,0.463927,0.895369,0.921146,0.934919,0.975828,0.730751,0.991182,0.261362,0.782238,0.238354,0.605633,0.577405,0.182577,0.958555,0.49597,0.0342311,0.0137219,0.622626,0.999069,0.876321,0.995581,0.814183,0.314344,0.894228,0.913787,0.0206701,0.633458,0.0697069,0.962298,0.453188,0.91186,0.961127,0.634809,0.954246,0.0752274,0.0963829,0.999865,0.986196,0.648625,0.999628,0.999207,0.537085,0.484266,0.999962,1,0.0118514,1,0.993937,0.800989,0.59575,0.95489,0.985451,0.0341817,0.353606,0.616093,0.992325,0.0381477,0.702129,3.10166e-05,0.413324,0.00158041,0.300086,0.463529,0.432679,0.979153,0.899211,0.999996,0.578134,0.999998,0.143862,0.99999,0.914885,0.961533,0.0754033,1,1,0.459892,0.967184,0.995605,0.938703,0.670317,0.645794,0.989341,0.999987,0.185655,0.889303,0.962531,0.924163,0.991936,0.85587,0.0499683,0.225168,0.0507049,0.101033,0.558632,1,0.969895,0.999824,1,0.0308205,0.999995,1,0.598241,1,0.86466,1,0.986791,1,0.999999,1,0.831701,0.907569,0.329169,3.7145e-05,0.393496,0.963838,0.304457,0.677697,0.420454,0.648004,0.99875,0.0794429,0.876479,0.954977,0.0160405,0.912608,0.00843065,0.166664,0.987226,0.399487,0.307153,0.429892,1,0.260314,7.334e-07,0.0128018,0.0517559,0.936859,0.0857234,0.999815,0.512303,0.438748,1,0.740396,0.891544,0.0273417,0.0637841,0.988644,0.99998,0.810642,0.836915,0.00198122,0.30335,1,0.00142414,0.28451,0.823973,0.00809547,0.962649,0.699073,0.160612,3.97099e-05,0.896652,0.715673,0.992735,0.948531,0.7927,0.831827,0.00271365,0.132092,0.817279,0.27372,0.941344,0.313977,0.730569,0.990088,0.996913,0.989854,0.616578,0.00523091,0.950108,0.674435,0.898897,0.955087,0.174582,0.585259,0.306762,0.0430916,0.127023,0.931735,0.0035866,0.249811,8.9334e-05,0.995181,0.360175,0.790193,0.00165646,0.460823,0.0493605,0.753401,0.378181,0.500955,0.619308,0.0366514,0.658082,0.0147731,0.96412,0.687602,0.828496,0.252356,0.0711049,0.938305,0.0241979,0.981808,0.139172,0.831592,0.792752,0.512792,0.138745,0.712364,0.150141,0.0295217,1.50758e-05,0.753476,0.928515,0.118037,0.0010598,0.0650316,0.124284,0.00290731,0.0241172,0.161634,0.342022,0.0709236,0.15429,0.628422,0.0131817,0.404365,0.0156404,0.000497013,0.684188,0.0825419,0.0128316,0.921658,0.668417,0.00392411,0.225095,0.0547946,0.293773,0.699985,0.971535,0.952747,0.724762,0.589338,0.146404,0.0477133,0.00638954,0.0271785,0.991927,0.080938,0.719345,0.476109,0.165757,0.151504,0.822168,0.350882,0.199916,0.60162,0.141837,0.172888,0.452248,0.133588,0.0292304,0.879243,0.708159,0.165877,0.730257,0.00108254,0.726974,0.404597,0.0264243,0.522864,0.103692,0.549905,0.531728,0.953011,0.761024,0.0857224,0.585009,0.188617,0.132324,0.54402,0.530186,0.524962,0.747691,3.50364e-05,0.292056,0.404784,0.0568793,0.078207,0.00176717,0.00627674,0.804883,7.56054e-06,0.592076,0.46385,0.44429,0.00456521,0.686692,0.299274,0.309386,0.543768,0.779245,0.738601,0.0357965,0.636422,0.0129421,0.52976,0.921731,0.506797,0.710986,0.482112,0.651015,6.08004e-05,0.817796,0.435552,0.390919,0.143202,0.865779,0.147965,0.0311113,0.779219,0.325165,0.64235,0.85841,0.756989,0.764477,0.62856,0.356846,0.594593,0.888473,0.69345,0.198628,0.909103,0.000943291,0.917378,0.326313,0.875945,0.246897,0.487602,0.919367,0.257867,0.743399,0.162823,0.0441929,0.0114608,0.45544,0.15364,0.322314,0.059507,0.508994,0.297407,0.593013,0.942342,0.830741,0.972665,0.02329,0.0619095,0.147681,0.192451,0.732131,0.557188,0.681925,3.43457e-05,0.359448,0.0843227,0.535994,0.00662802,0.162628,0.530219,0.026122,3.49962e-06,1.46971e-06,0.00551201,0.47914,0.321154,0.871302,0.0950547,0.146844,0.000507265,0.880272,0.837012,0.161958,0.250775,0.0273086,0.0261306,0.501504,0.26342,0.345658,0.692956,0.82979,0.000737029,0.0043971,0.000635937,0.331372,0.000375552
 
}}
 
}}

Revision as of 02:29, 19 October 2012


Full id: C160_medulla_Hepatocyte_retina_corpus_liver_pineal_cerebral



Phase1 CAGE Peaks

  Short description
Hg19::chr10:18240814..18240829,+ p5@SLC39A12
Hg19::chr10:18240834..18240897,+ p1@SLC39A12
Hg19::chr10:18242109..18242116,+ p9@SLC39A12
Hg19::chr10:18242120..18242136,+ p4@SLC39A12
Hg19::chr10:18242141..18242184,+ p2@SLC39A12
Hg19::chr11:119216846..119216857,- p@chr11:119216846..119216857
-
Hg19::chr11:119217365..119217398,- p1@MFRP
p2@C1QTNF5
Hg19::chr11:62783276..62783295,- p2@SLC22A8
Hg19::chr11:71869850..71869861,+ p1@ENST00000544535
Hg19::chr11:71900740..71900772,+ p3@FOLR1
Hg19::chr12:129304411..129304414,- p11@SLC15A4
Hg19::chr12:20951599..20951604,+ p@chr12:20951599..20951604
+
Hg19::chr12:44467399..44467407,+ p12@TMEM117
Hg19::chr12:44467410..44467418,+ p13@TMEM117
Hg19::chr12:47779637..47779662,- p@chr12:47779637..47779662
-
Hg19::chr14:91932629..91932652,- p14@SMEK1
Hg19::chr15:40492238..40492270,+ p8@BUB1B
Hg19::chr15:68924373..68924411,+ p16@CORO2B
Hg19::chr17:48912918..48912925,+ p3@WFIKKN2
Hg19::chr17:48912939..48912963,+ p1@WFIKKN2
Hg19::chr17:48913037..48913055,+ p2@WFIKKN2
Hg19::chr17:48913092..48913105,+ p4@WFIKKN2
Hg19::chr17:57229155..57229198,- p@chr17:57229155..57229198
-
Hg19::chr18:29171832..29171847,+ p1@TTR
Hg19::chr18:29172846..29172875,+ p4@TTR
Hg19::chr18:29172879..29172882,+ p5@TTR
Hg19::chr18:29172884..29172921,+ p2@TTR
Hg19::chr18:29172924..29172962,+ p3@TTR
Hg19::chr18:29175078..29175088,+ p@chr18:29175078..29175088
+
Hg19::chr18:29175095..29175110,+ p@chr18:29175095..29175110
+
Hg19::chr18:29175113..29175118,+ p@chr18:29175113..29175118
+
Hg19::chr18:29175123..29175131,+ p@chr18:29175123..29175131
+
Hg19::chr18:29175152..29175199,+ p@chr18:29175152..29175199
+
Hg19::chr18:29175184..29175198,- p@chr18:29175184..29175198
-
Hg19::chr18:29178527..29178571,+ p@chr18:29178527..29178571
+
Hg19::chr18:29178550..29178583,- p@chr18:29178550..29178583
-
Hg19::chr18:29178574..29178579,+ p@chr18:29178574..29178579
+
Hg19::chr18:29178581..29178599,+ p@chr18:29178581..29178599
+
Hg19::chr18:29178596..29178626,- -
p@chr18:29178596..29178626
Hg19::chr18:29178609..29178620,+ p@chr18:29178609..29178620
+
Hg19::chr18:29178630..29178652,- p@chr18:29178630..29178652
-
Hg19::chr18:29178636..29178652,+ p@chr18:29178636..29178652
+
Hg19::chr18:29178674..29178686,- p@chr18:29178674..29178686
-
Hg19::chr18:29178674..29178693,+ p@chr18:29178674..29178693
+
Hg19::chr18:29178704..29178717,+ p@chr18:29178704..29178717
+
Hg19::chr18:29178720..29178749,+ p@chr18:29178720..29178749
+
Hg19::chr18:59423008..59423021,+ p@chr18:59423008..59423021
+
Hg19::chr19:16830652..16830663,+ p3@NWD1
Hg19::chr19:16830713..16830741,+ p4@NWD1
Hg19::chr19:16830774..16830814,+ p1@NWD1
Hg19::chr1:20617362..20617380,+ p1@VWA5B1
Hg19::chr1:220924670..220924672,+ p@chr1:220924670..220924672
+
Hg19::chr20:30264810..30264831,- p@chr20:30264810..30264831
-
Hg19::chr21:25014751..25014755,+ p@chr21:25014751..25014755
+
Hg19::chr2:62453859..62453863,- p@chr2:62453859..62453863
-
Hg19::chr2:8851401..8851408,+ p@chr2:8851401..8851408
+
Hg19::chr3:156840776..156840823,- p1@LOC339894
Hg19::chr3:193096512..193096519,- p3@ATP13A5
Hg19::chr3:193096536..193096547,- p1@ATP13A5
Hg19::chr3:59750150..59750155,- p@chr3:59750150..59750155
-
Hg19::chr3:59750161..59750179,- p@chr3:59750161..59750179
-
Hg19::chr3:59750186..59750202,- p@chr3:59750186..59750202
-
Hg19::chr3:59750207..59750262,- p@chr3:59750207..59750262
-
Hg19::chr3:61241825..61241830,- p@chr3:61241825..61241830
-
Hg19::chr4:186318393..186318446,- p@chr4:186318393..186318446
-
Hg19::chr4:34621389..34621413,+ p@chr4:34621389..34621413
+
Hg19::chr5:33514132..33514156,+ p@chr5:33514132..33514156
+
Hg19::chr5:35089799..35089804,- p20@PRLR
Hg19::chr5:35089832..35089839,- p26@PRLR
Hg19::chr5:35089843..35089860,- p7@PRLR
Hg19::chr5:35089867..35089884,- p5@PRLR
Hg19::chr5:35090057..35090065,- p27@PRLR
Hg19::chr5:35090259..35090267,- p12@PRLR
Hg19::chr5:35090318..35090324,- p@chr5:35090318..35090324
-
Hg19::chr6:132580699..132580702,+ p@chr6:132580699..132580702
+
Hg19::chr7:129012882..129012891,- p@chr7:129012882..129012891
-
Hg19::chr7:129013106..129013120,- p@chr7:129013106..129013120
-
Hg19::chr7:129015511..129015519,+ p30@AHCYL2
Hg19::chr7:129015540..129015550,+ p23@AHCYL2
Hg19::chr7:129015616..129015619,+ p38@AHCYL2
Hg19::chr7:129015671..129015685,+ p11@AHCYL2
Hg19::chr7:129015806..129015815,+ p@chr7:129015806..129015815
+
Hg19::chr7:129015906..129015915,+ p@chr7:129015906..129015915
+
Hg19::chr7:129027894..129027906,+ p16@AHCYL2
Hg19::chr7:135366185..135366192,- p@chr7:135366185..135366192
-
Hg19::chr7:135366210..135366222,- -
p@chr7:135366210..135366222
Hg19::chr7:135366373..135366382,- p@chr7:135366373..135366382
-
Hg19::chr7:135412540..135412552,- p2@SLC13A4
Hg19::chr7:135412925..135412944,- p1@SLC13A4
Hg19::chr7:150529074..150529076,+ p@chr7:150529074..150529076
+
Hg19::chr7:151771377..151771389,+ p2@GALNT11
Hg19::chr7:151772200..151772217,+ p13@GALNT11
Hg19::chr7:80255485..80255507,+ p24@CD36
Hg19::chr7:80255514..80255524,+ p28@CD36
Hg19::chr8:120685906..120685920,- p4@ENPP2
Hg19::chr8:12803139..12803144,+ p23@KIAA1456
Hg19::chr8:12803146..12803155,+ p17@KIAA1456
Hg19::chr8:12803176..12803195,+ p3@KIAA1456
Hg19::chr8:72234691..72234696,- p13@EYA1
Hg19::chr9:113490531..113490547,+ p@chr9:113490531..113490547
+
Hg19::chr9:130637244..130637303,- p4@AK1
Hg19::chr9:20927844..20927855,+ p@chr9:20927844..20927855
+
Hg19::chr9:34381453..34381479,- p3@C9orf24
Hg19::chr9:5954514..5954521,- p18@KIAA2026
Hg19::chr9:73396238..73396243,- p@chr9:73396238..73396243
-
Hg19::chrX:106163626..106163638,+ p2@CLDN2
Hg19::chrX:108041633..108041636,+ p@chrX:108041633..108041636
+
Hg19::chrX:109683362..109683372,- p9@AMMECR1
Hg19::chrX:152798683..152798691,+ p@chrX:152798683..152798691
+


Enriched pathways on this co-expression clusterSummary:
Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.
Analyst: Emmanuel Dimont

link to source dataset
data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression clusterSummary: Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter.
Analyst: Erik Arner

link to source dataset
data


GO IDGO nameFDR corrected p-value
GO:0016021integral to membrane0.0111405358355432
GO:0031224intrinsic to membrane0.0111405358355432
GO:0016020membrane0.0130779249451524
GO:0044425membrane part0.0130779249451524
GO:0015382sodium:sulfate symporter activity0.02254798068998
GO:0004925prolactin receptor activity0.02254798068998
GO:0046655folic acid metabolic process0.02254798068998
GO:0042976activation of JAK protein0.02254798068998
GO:0042977tyrosine phosphorylation of JAK2 protein0.02254798068998
GO:0047391alkylglycerophosphoethanolamine phosphodiesterase activity0.02254798068998
GO:0042978ornithine decarboxylase activator activity0.02254798068998
GO:0051179localization0.0370790960593757
GO:0015349thyroid hormone transmembrane transporter activity0.0370790960593757
GO:0005887integral to plasma membrane0.0370790960593757
GO:0031226intrinsic to plasma membrane0.0370790960593757
GO:0007171transmembrane receptor protein tyrosine kinase activation (dimerization)0.0413124155449544
GO:0000940outer kinetochore of condensed chromosome0.0413124155449544
GO:0051233spindle midzone0.0413124155449544
GO:0004528phosphodiesterase I activity0.0490975201158827
GO:0044459plasma membrane part0.0490975201158827
GO:0006810transport0.0490975201158827



Enriched sample ontology terms on this co-expression clusterSummary:To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. Analyst: Hideya Kawaji

links to source dataset


uberon_data


Uber Anatomy
Ontology termp-valuen
medulla oblongata5.53e-473
myelencephalon5.53e-473
future myelencephalon5.53e-473
pineal body2.97e-312
regional part of epithalamus2.97e-312
secretory circumventricular organ2.97e-312
circumventricular organ2.97e-312
epithalamus2.97e-312
brainstem6.70e-246
regional part of nervous system3.36e-2253
regional part of brain3.36e-2253
central nervous system2.67e-2181
neural tube5.38e-2156
neural rod5.38e-2156
future spinal cord5.38e-2156
neural keel5.38e-2156
brain6.26e-2168
future brain6.26e-2168
diencephalon4.19e-207
future diencephalon4.19e-207
nervous system4.00e-1989
adult organism2.81e-18114
neural plate1.44e-1782
presumptive neural plate1.44e-1782
corpus callosum6.47e-171
central nervous system cell part cluster6.47e-171
axon tract6.47e-171
intercerebral commissure6.47e-171
dorsal telencephalic commissure6.47e-171
brain white matter6.47e-171
brain commissure6.47e-171
white matter6.47e-171
nervous system commissure6.47e-171
cerebral hemisphere white matter6.47e-171
neurectoderm1.02e-1686
gland of diencephalon3.59e-164
neuroendocrine gland3.59e-164
regional part of diencephalon3.59e-164
ecto-epithelium1.07e-13104
regional part of forebrain7.30e-1341
forebrain7.30e-1341
anterior neural tube7.30e-1341
future forebrain7.30e-1341
segmental subdivision of hindbrain2.75e-1212
hindbrain2.75e-1212
presumptive hindbrain2.75e-1212
pre-chordal neural plate1.25e-1161
ectoderm-derived structure1.34e-11171
ectoderm1.34e-11171
presumptive ectoderm1.34e-11171
segmental subdivision of nervous system2.18e-1113
structure with developmental contribution from neural crest1.30e-10132
posterior neural tube6.02e-1015
chordal neural plate6.02e-1015
multi cell component structure4.02e-092
neuron projection bundle4.02e-092
Ammon's horn4.34e-092
lobe parts of cerebral cortex4.34e-092
hippocampal formation4.34e-092
limbic lobe4.34e-092
meninx4.70e-092
membrane organ4.70e-092
meningeal cluster4.70e-092
organ system subdivision4.22e-07223


Overrepresented TFBS (DNA) motifs on this co-expression clusterSummary:The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. Analyst: Michiel de Hoon

link to source data
Novel motifs
data

Jaspar motifs
data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysisSummary: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained.
Analyst: Erik Arner

link to source dataset

data


(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
POU5F1#5460412.3096954661250.0003393076685397590.00344985918950778



Relative expression of the co-expression clusterSummary:Co-expression clusters are compared against FANTOM5 samples to obtain relative expression.
Analyst:NA

link to data source
data