Coexpression cluster:C4222: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 8: | Line 8: | ||
|tf_chipseq_enrich=CCNT2#905;3:6.33620157696263:0.00393075003576489:0.0190507031873984!CEBPB#1051;3:7.97114762582482:0.00197418705528856:0.0115508191522287!CTCF#10664;3:5.36025637307503:0.006492509252767:0.0280241020767785!E2F1#1869;3:4.90738921487932:0.00846098534723939:0.0326349613576221!E2F6#1876;3:5.01715573169739:0.0079176980688633:0.0323165729488047!EBF1#1879;3:8.906466846569:0.0014152328356098:0.00917192070234268!ELF1#1997;3:4.25809795880754:0.0129517987505461:0.0463577541967951!GABPB1#2553;3:7.06768383618217:0.00283221282541742:0.015447747820857!GATA2#2624;3:12.744931733554:0.000482952770428379:0.00437763447238062!HDAC2#3066;3:13.4156202366263:0.000414076139985721:0.00392251228879535!IRF1#3659;3:7.6371637535639:0.00224469274729724:0.0128407441438887!MAX#4149;3:6.45255550900712:0.00372191383426551:0.0187007100421849!MXI1#4601;3:9.9615716287593:0.00101147054125902:0.00721416184241965!MYC#4609;3:5.2222818716094:0.00702084375574015:0.029524860117002!NANOG#79923;3:29.2447784810127:3.99627955670032e-05:0.000739226781123318!NRF1#4899;3:12.2102794477109:0.000549217240102001:0.00472174014973764!POU2F2#5452;3:9.10612405774252:0.00132416519268213:0.0088367085340913!SIN3A#25942;3:5.40888472681514:0.00631896197799152:0.0277533146902501!SIX5#147912;3:17.086715355459:0.000200406054632501:0.00239997797726909!SRF#6722;3:13.7971782621678:0.000380661502580019:0.00375764713307699!THAP1#55145;3:31.3691446028513:3.23800758564397e-05:0.000648215975152522!USF1#7391;3:6.36149927720796:0.0038840405729056:0.0190793148673011!YY1#7528;3:4.91117074985386:0.00844145534180826:0.0330168959045432!ZNF263#10127;3:8.22184163701068:0.00179904392556587:0.0109672162352425 | |tf_chipseq_enrich=CCNT2#905;3:6.33620157696263:0.00393075003576489:0.0190507031873984!CEBPB#1051;3:7.97114762582482:0.00197418705528856:0.0115508191522287!CTCF#10664;3:5.36025637307503:0.006492509252767:0.0280241020767785!E2F1#1869;3:4.90738921487932:0.00846098534723939:0.0326349613576221!E2F6#1876;3:5.01715573169739:0.0079176980688633:0.0323165729488047!EBF1#1879;3:8.906466846569:0.0014152328356098:0.00917192070234268!ELF1#1997;3:4.25809795880754:0.0129517987505461:0.0463577541967951!GABPB1#2553;3:7.06768383618217:0.00283221282541742:0.015447747820857!GATA2#2624;3:12.744931733554:0.000482952770428379:0.00437763447238062!HDAC2#3066;3:13.4156202366263:0.000414076139985721:0.00392251228879535!IRF1#3659;3:7.6371637535639:0.00224469274729724:0.0128407441438887!MAX#4149;3:6.45255550900712:0.00372191383426551:0.0187007100421849!MXI1#4601;3:9.9615716287593:0.00101147054125902:0.00721416184241965!MYC#4609;3:5.2222818716094:0.00702084375574015:0.029524860117002!NANOG#79923;3:29.2447784810127:3.99627955670032e-05:0.000739226781123318!NRF1#4899;3:12.2102794477109:0.000549217240102001:0.00472174014973764!POU2F2#5452;3:9.10612405774252:0.00132416519268213:0.0088367085340913!SIN3A#25942;3:5.40888472681514:0.00631896197799152:0.0277533146902501!SIX5#147912;3:17.086715355459:0.000200406054632501:0.00239997797726909!SRF#6722;3:13.7971782621678:0.000380661502580019:0.00375764713307699!THAP1#55145;3:31.3691446028513:3.23800758564397e-05:0.000648215975152522!USF1#7391;3:6.36149927720796:0.0038840405729056:0.0190793148673011!YY1#7528;3:4.91117074985386:0.00844145534180826:0.0330168959045432!ZNF263#10127;3:8.22184163701068:0.00179904392556587:0.0109672162352425 | ||
|tfbs_overrepresentation=2.36262e-05,0.00175569,0.716932,0.0477154,0.199763,0.287811,0.0430074,0.414564,0.03272,0.0257057,0.139423,0.0275521,0.188771,0.000367918,0.000616359,0.0619003,0.140982,0.0982016,0.0528514,0.108057,0.188635,0.132577,0.00345589,0.0948982,1.23595e-05,0.215492,0.209392,0.0907212,0.143747,0.0933697,9.60364e-05,0.114046,0.0180314,0.208242,0.0665252,0.0844722,0.00687964,0.0429682,2.59699e-07,0.0667043,0.0964797,0.0246116,0.140039,0.184019,0.120917,0.0362416,0.0380166,0.18151,0.111283,0.121201,0.154071,0.00149495,0.0701653,0.0929951,0.198787,0.0384161,0.107455,0.212709,0.0783235,0.105572,0.0294301,0.149417,0.108602,0.0759481,0.054569,0.0504887,0.352278,0.00183766,0.0860723,0.0148026,0.00146949,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.291327,0.251834,0.064341,0.209032,0.241734,0.062747,0.0857568,2.11067e-05,0.0953825,0.0473737,0.0853887,0.115028,0.58489,0.153631,0.0927458,0.27413,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.00862108,0.144217,0.0400492,0.182599,0.0339971,0.149552,0.0176855,0.101221,0.0337525,0.0203386,0.00163609,0.139021,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.102368,0.176912,0.0906875,0.0147934,0.0843604,0.000455452,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.127606,0.203923,0.155998,0.230347,0.0693171,0.0988228,0.0842275,0.0389418,0.120833,0.200647,0.143677,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.228385,0.0516985,0.0337251,7.74657e-06,0.0952829,0.116642,0.147788,1.12411e-06,0.114283,0.0400322,0.127369,0.0403542,0.312091,0.179689,0.137725,0.12972,0.0014925,0.0799324,0.090079,0.0103428,2.29494e-06,0.178449,0.0356339,0.158844,0.00782633,0.0274061,0.115574,7.06907e-05,0.118847,2.37817e-06,1.11433e-05,0.0828697,0.173562,0.107145,0.187297,0.122935,0.228812,0.112671,0.0470731,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.259411,0.27358,0.15185,0.206299,0.178359,0.0458667,0.104357,0.121154,0.1129,0.00664287,0.169057,0.164202,0.100942,0.062995,0.10299,2.0244e-05,0.37245,0.15606,0.161026,0.0738599,0.00837667,1.84679e-05,0.085973,0.060453,0.059896,0.569726,0.384785,0.0418404,0.0765029,0.0959204,0.00448418,0.0472272,0.263087,0.163502,0.214803,0.00117271,0.0695582,0.00500828,0.0830921,0.116283,0.136838,0.0815104,0.111647,0.0802194,0.117027,0.00076121,0.00122826,0.185743,0.0980288,0.0980899,0.159674,0.107242,0.201859,0.0695832,0.21774,4.14966e-05,0.1751,0.163376,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.0755168,0.278352,0.063292,0.0356268,0.446759,0.0865903,0.0380459,0.00886625,0.584917,0.713218,0.451377,0.635872,0.563047,0.0986134,0.00690237,0.0638737,0.629514,0.261553,0.446302,0.373681,0.00641099,0.49143,0.330703,0.0146881,0.329568,0.53472,0.615744,0.271958,0.0475727,0.405773,0.39729,0.0582602,0.0643874,0.187251,0.362792,0.181715,0.10624,0.109988,0.0620388,0.218329,0.427027,0.376924,0.129235,0.647576,0.528324,0.520763,0.370782,0.0173702,0.484505,0.253571,1.22046e-06,0.301787,0.481778,0.316882,0.223503,0.503224,0.603208,0.283727,0.314747,0.577664,0.291709,0.448095,0.00192508,0.0175396,0.292835,0.0280875,0.439556,0.373868,0.57762,0.608919,0.18237,0.346458,0.248484,0.0512465,0.275351,0.236471,0.185661,0.346319,0.179399,0.0405716,0.0772647,0.503058,0.513852,0.000993751,0.248634,0.281576,0.0271848,0.163244,0.0670502,0.0730934,0.184794,0.230427,0.762864,0.581837,0.0169683,0.671377,0.546839,0.00142658,0.448039,0.0258593,0.312808,0.117923,0.0451077,0.0747529,0.0284893,0.650179,0.00223439,0.50215,0.294698,0.34331,0.477304,0.289204,0.000749204,0.319027,0.278044,0.229008,0.428671,0.0282539,0.336314,0.19763,0.15631,0.567452,0.421464,0.48267,0.420626,0.516462,0.858756,0.335105,0.000567622,0.0111455,0.385517,0.376191,0.0224279,0.459928,0.252232,0.152681,0.0465712,0.00985947,0.259235,0.134788,0.0985856,0.546222,0.00541072,0.284593,0.000938454,0.306556,0.00617767,0.2348,0.503082,0.522888,0.284629,0.262537,0.010587,0.226257,0.405955,0.0175765,0.363685,0.464871,0.166672,0.206222,0.00713629,0.651524,0.437176,0.000314183,0.339277,0.0479524,0.281425,0.141758,0.124432,0.168058,0.159617,0.238587,0.372281,0.232251,0.0192138,0.0891382,0.0595618,0.524997,0.625309,0.0688327,0.539392,0.34988,0.475069,0.00199596,0.6408,0.0793778,0.316179,0.0697683,0.0556835,7.3507e-05,0.0779981,0.0575676,0.144322,0.223391,0.203656,0.116981,0.441735,0.191777,0.111931,0.28934,0.0435386,0.303336,0.126478,0.134852,0.10689,0.273326,0.0627924,0.381386,0.0179103,0.0517437,0.00461664,0.0886747,0.0464827,0.169603,0.114583,0.104559,0.0899537,0.00387172,0.15983,0.107111,0.000976405,0.00389058,0.123593,0.129156,0.00184145,7.53678e-05,0.346372,0.0499762,0.0828956,0.0666953,0.182185,0.111277,0.026047,0.332809,0.19559,0.132201,0.00130383,0.0481795,0.199971,0.016022,0.127758,0.0164446,0.184486,0.015204,0.0876426,0.0952322,0.0112557,0.0268081,0.107043,0.275244,0.00481323,0.173708,0.000523704,0.211595,0.0300692,0.131551,0.0445237,0.052362,6.26508e-09,0.153187,0.0797897,0.0974211,0.160149,0.123526,0.0906475,0.0558058,0.28262,0.0377931,0.137332,0.0145999,0.0656973,0.00188014,0.000131656,0.0801488,0.0757897,0.161801,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.254674,0.170307,0.201033,0.0488949,0.174921,0.370421,0.0330727,0.0694567,0.02609,0.0394698,0.0596469,0.0178982,0.122476,0.108872,0.000241884,0.26144,0.0286025,0.549354,0.144567,0.038848,0.0874516,0.0550279,0.144067,0.00335855,0.00203513,0.190048,0.131088,0.00176415,0.237101,0.286988,0.0761239,0.172491,0.0818785,0.182701,0.0637246,2.39266e-05,0.141463,0.000891578,0.0103864,0.0889592,9.91491e-15,0.0458479,0.0473033,0.094881,0.445524,3.73309e-12,0.00307881,0.109194,0.000391885,0.131452,0.687347,0.448776,0.051838,0.000176849,0.0500365,0.061829,7.60655e-05,0.000147224,0.144075,0.0340203,0.0741807,0.00447267,0.739716,0.655293,0.00204117,0.00514993,0.000310064,0.192475,0.177967,0.547859,0.057571,0.047591,0.392974,0.0608699,0.00103374,0.00583965,0.0713214,0.223874,0.291114,0.0355833,0.125606,0.175094,0.911304,0.297678,0.206454,0.218192,0.00608582,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.226171,0.153469,0.0376916,0.13262,0.0450031,3.76086e-07,0.114242,0.0929549,0.172425,0.104948,0.00217546,0.057168,0.234298,0.00296278,0.286863,0.152372,0.0203723,0.218271,0.101607,0.327067,0.172982,0.340936,0.151597,0.0626744,0.191335,0.148574,0.504592,0.155821,2.24667e-10,0.0919008,0.0602373,0.144304,0.15063,0.0973823,0.15503,0.170295,0.0200941,0.137219,0.00238639,0.251466,0.288096,0.11903,0.0838874,0.00806892,0.113145,0.112651,0.186638,0.174776,0.00464715,0.264079,0.249049,0.140533,0.0997756,0.0364628,0.103667,0.113069,0.025556,0.16791,0.00423976,0.585505,0.166967,0.188651,0.0813902,0.184948,0.156261,0.311847,0.511859,0.0590944,0.247324,0.0169521,0.218229,0.231073,0.0020598,0.619906,0.0360851,0.412187,0.131093,0.0434602,0.133616,0.418146,0.36927,0.449036,0.0162067,0.231447,0.18653,0.43956,0.37006,0.42622,0.448797,0.0209277,3.79347e-09,0.36145,0.406019,0.381071,0.580441,0.0863135,0.11074,0.722159,0.390366,0.48809,0.00559336,0.443185,0.522904,0.0199034,0.871256,0.227104,0.518585,0.617852,0.0135352,0.284625,0.504757,0.55194,0.729153,0.28907,0.164197,0.462688,0.287881,0.0556235,0.478174,4.64145e-06,0.468444,0.258219,0.119142,0.243383,0.777351,0.390974,0.73485,0.683217,0.161598,0.751174,0.644754,0.0323708,0.799185,0.37357,0.78509,0.477353,0.452741,0.746954,0.771991,0.20342,0.200493,0.20558,0.300504,0.00348292,0.425963,0.349197,0.383291,0.156104,0.141318,0.411941,0.0961477,0.314438,0.354789,0.163828,0.230581,0.120226,0.28424,0.562405,0.314429,0.181415,0.282286,0.446891,0.616388,0.01635,0.000926901,0.322213,0.656109,0.33942,0.00285083,0.387276,0.0391112,0.0816402,0.537348,0.222037,0.416621,0.416292,0.0252635,0.0457685,0.579431,0.204817,0.452428,0.138871,0.308032,0.166905,0.19783,0.0833851,0.316453,0.48065,0.175199,0.332919,0.0805711,0.0393909,0.0980968,0.365487,0.534741,0.39088,0.363192,0.00266072,0.203486,0.273398,0.375787,0.4466,0.351067,0.275347,9.09657e-05,0.000553931,0.00285094,0.0795725,0.0527347,0.00604105,0.15059,0.386538,0.508064,0.250964,0.383276,0.0243456,0.504711,0.220231,0.00608438,0.196976,0.191517,0.463751,0.00258603,0.307334,0.459728,0.283463,0.0517073,0.135386,0.399569,0.273281,0.0114705,0.275089,0.384593,0.00444763,0.0105648,0.339729,0.197805,0.0153645,0.387069,0.332774,0.00107377,0.299887,0.0814305,0.205413,0.00105378,0.0779009,0.276869,0.205298,3.8422e-10,0.18966,0.036838,0.188263,0.0719199,0.00386277,1.26386e-06,0.19104,0.163057,0.219428,0.208013,0.0900729,0.0953646,0.000872573,0.252184,1.06858e-05,0.255516,0.00176345,0.119514,0.179412,0.193601,0.00215229,0.00221755,0.341681,0.310674,0.21801,0.0015337,0.186804,0.123324,0.199468,0.0325925,0.0933115,0.12405,0.179889,0.0023439,0.27872,0.00376943,0.131118,0.20837,5.77125e-07,5.05887e-15,0.0673329,0.20847,0.266544,0.113092,0.145701,0.229428,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.00404853,0.201602,0.350452,0.154941,0.000318033,0.0986735,0.108462,0.0595618,0.21593,0.000752649,0.220319,0.195218,0.124213,0.259632,2.52161e-06,0.00113527,0.159884,7.46043e-07,0.150733,0.217112,0.00801612,0.00121059,0.185335,0.0723291,0.0367308,0.00371613,0.00166408,2.24734e-10,0.207559,0.010576,0.193031,0.249101,0.115972,0.0273485,0.246105,0.173026,0.200432,0.139785,0.197112,0.0315594,0.156465,0.00899301,0.256963,0.00221189,0.172134,0.176789,0.000163687,0.202137,0.00649151,0.0437875,0.218161,0.0822373,0.0219487,0.106739,0.0536053,2.70035e-05,0.15113,0.078016,0.0407233,0.0537355,0.319922,0.00371523,0.211332,0.187731,0.0025753,0.189559,0.0812887,0.0981146,0.064145,0.121913,0.0638699,0.104603,0.0663259,7.83704e-05,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.286691,0.0687209,0.141729,0.0037817,0.255956,0.200105,0.0280973,0.29837,0.253509,0.177664,0.00482769,0.264413,0.000422974,0.160658,0.206239,0.19924,0.0457735,0.00267717,0.325148,0.115817,0.00206474,0.223831,0.11528,0.00144649,0.0195259,0.281727,0.283218,6.14904e-07,0.164638,0.00225856,0.0935776,0.327622,0.225752,1.8176e-07,3.96708e-06,0.0859274,0.316866,0.171683,0.158847,0.271275,0.071111,0.0404514,0.101021,0.222548,0.0164735,0.157274,0.215705,0.252796,0.205954,0.361435 | |tfbs_overrepresentation=2.36262e-05,0.00175569,0.716932,0.0477154,0.199763,0.287811,0.0430074,0.414564,0.03272,0.0257057,0.139423,0.0275521,0.188771,0.000367918,0.000616359,0.0619003,0.140982,0.0982016,0.0528514,0.108057,0.188635,0.132577,0.00345589,0.0948982,1.23595e-05,0.215492,0.209392,0.0907212,0.143747,0.0933697,9.60364e-05,0.114046,0.0180314,0.208242,0.0665252,0.0844722,0.00687964,0.0429682,2.59699e-07,0.0667043,0.0964797,0.0246116,0.140039,0.184019,0.120917,0.0362416,0.0380166,0.18151,0.111283,0.121201,0.154071,0.00149495,0.0701653,0.0929951,0.198787,0.0384161,0.107455,0.212709,0.0783235,0.105572,0.0294301,0.149417,0.108602,0.0759481,0.054569,0.0504887,0.352278,0.00183766,0.0860723,0.0148026,0.00146949,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.291327,0.251834,0.064341,0.209032,0.241734,0.062747,0.0857568,2.11067e-05,0.0953825,0.0473737,0.0853887,0.115028,0.58489,0.153631,0.0927458,0.27413,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.00862108,0.144217,0.0400492,0.182599,0.0339971,0.149552,0.0176855,0.101221,0.0337525,0.0203386,0.00163609,0.139021,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.102368,0.176912,0.0906875,0.0147934,0.0843604,0.000455452,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.127606,0.203923,0.155998,0.230347,0.0693171,0.0988228,0.0842275,0.0389418,0.120833,0.200647,0.143677,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.228385,0.0516985,0.0337251,7.74657e-06,0.0952829,0.116642,0.147788,1.12411e-06,0.114283,0.0400322,0.127369,0.0403542,0.312091,0.179689,0.137725,0.12972,0.0014925,0.0799324,0.090079,0.0103428,2.29494e-06,0.178449,0.0356339,0.158844,0.00782633,0.0274061,0.115574,7.06907e-05,0.118847,2.37817e-06,1.11433e-05,0.0828697,0.173562,0.107145,0.187297,0.122935,0.228812,0.112671,0.0470731,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.259411,0.27358,0.15185,0.206299,0.178359,0.0458667,0.104357,0.121154,0.1129,0.00664287,0.169057,0.164202,0.100942,0.062995,0.10299,2.0244e-05,0.37245,0.15606,0.161026,0.0738599,0.00837667,1.84679e-05,0.085973,0.060453,0.059896,0.569726,0.384785,0.0418404,0.0765029,0.0959204,0.00448418,0.0472272,0.263087,0.163502,0.214803,0.00117271,0.0695582,0.00500828,0.0830921,0.116283,0.136838,0.0815104,0.111647,0.0802194,0.117027,0.00076121,0.00122826,0.185743,0.0980288,0.0980899,0.159674,0.107242,0.201859,0.0695832,0.21774,4.14966e-05,0.1751,0.163376,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.0755168,0.278352,0.063292,0.0356268,0.446759,0.0865903,0.0380459,0.00886625,0.584917,0.713218,0.451377,0.635872,0.563047,0.0986134,0.00690237,0.0638737,0.629514,0.261553,0.446302,0.373681,0.00641099,0.49143,0.330703,0.0146881,0.329568,0.53472,0.615744,0.271958,0.0475727,0.405773,0.39729,0.0582602,0.0643874,0.187251,0.362792,0.181715,0.10624,0.109988,0.0620388,0.218329,0.427027,0.376924,0.129235,0.647576,0.528324,0.520763,0.370782,0.0173702,0.484505,0.253571,1.22046e-06,0.301787,0.481778,0.316882,0.223503,0.503224,0.603208,0.283727,0.314747,0.577664,0.291709,0.448095,0.00192508,0.0175396,0.292835,0.0280875,0.439556,0.373868,0.57762,0.608919,0.18237,0.346458,0.248484,0.0512465,0.275351,0.236471,0.185661,0.346319,0.179399,0.0405716,0.0772647,0.503058,0.513852,0.000993751,0.248634,0.281576,0.0271848,0.163244,0.0670502,0.0730934,0.184794,0.230427,0.762864,0.581837,0.0169683,0.671377,0.546839,0.00142658,0.448039,0.0258593,0.312808,0.117923,0.0451077,0.0747529,0.0284893,0.650179,0.00223439,0.50215,0.294698,0.34331,0.477304,0.289204,0.000749204,0.319027,0.278044,0.229008,0.428671,0.0282539,0.336314,0.19763,0.15631,0.567452,0.421464,0.48267,0.420626,0.516462,0.858756,0.335105,0.000567622,0.0111455,0.385517,0.376191,0.0224279,0.459928,0.252232,0.152681,0.0465712,0.00985947,0.259235,0.134788,0.0985856,0.546222,0.00541072,0.284593,0.000938454,0.306556,0.00617767,0.2348,0.503082,0.522888,0.284629,0.262537,0.010587,0.226257,0.405955,0.0175765,0.363685,0.464871,0.166672,0.206222,0.00713629,0.651524,0.437176,0.000314183,0.339277,0.0479524,0.281425,0.141758,0.124432,0.168058,0.159617,0.238587,0.372281,0.232251,0.0192138,0.0891382,0.0595618,0.524997,0.625309,0.0688327,0.539392,0.34988,0.475069,0.00199596,0.6408,0.0793778,0.316179,0.0697683,0.0556835,7.3507e-05,0.0779981,0.0575676,0.144322,0.223391,0.203656,0.116981,0.441735,0.191777,0.111931,0.28934,0.0435386,0.303336,0.126478,0.134852,0.10689,0.273326,0.0627924,0.381386,0.0179103,0.0517437,0.00461664,0.0886747,0.0464827,0.169603,0.114583,0.104559,0.0899537,0.00387172,0.15983,0.107111,0.000976405,0.00389058,0.123593,0.129156,0.00184145,7.53678e-05,0.346372,0.0499762,0.0828956,0.0666953,0.182185,0.111277,0.026047,0.332809,0.19559,0.132201,0.00130383,0.0481795,0.199971,0.016022,0.127758,0.0164446,0.184486,0.015204,0.0876426,0.0952322,0.0112557,0.0268081,0.107043,0.275244,0.00481323,0.173708,0.000523704,0.211595,0.0300692,0.131551,0.0445237,0.052362,6.26508e-09,0.153187,0.0797897,0.0974211,0.160149,0.123526,0.0906475,0.0558058,0.28262,0.0377931,0.137332,0.0145999,0.0656973,0.00188014,0.000131656,0.0801488,0.0757897,0.161801,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.254674,0.170307,0.201033,0.0488949,0.174921,0.370421,0.0330727,0.0694567,0.02609,0.0394698,0.0596469,0.0178982,0.122476,0.108872,0.000241884,0.26144,0.0286025,0.549354,0.144567,0.038848,0.0874516,0.0550279,0.144067,0.00335855,0.00203513,0.190048,0.131088,0.00176415,0.237101,0.286988,0.0761239,0.172491,0.0818785,0.182701,0.0637246,2.39266e-05,0.141463,0.000891578,0.0103864,0.0889592,9.91491e-15,0.0458479,0.0473033,0.094881,0.445524,3.73309e-12,0.00307881,0.109194,0.000391885,0.131452,0.687347,0.448776,0.051838,0.000176849,0.0500365,0.061829,7.60655e-05,0.000147224,0.144075,0.0340203,0.0741807,0.00447267,0.739716,0.655293,0.00204117,0.00514993,0.000310064,0.192475,0.177967,0.547859,0.057571,0.047591,0.392974,0.0608699,0.00103374,0.00583965,0.0713214,0.223874,0.291114,0.0355833,0.125606,0.175094,0.911304,0.297678,0.206454,0.218192,0.00608582,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.226171,0.153469,0.0376916,0.13262,0.0450031,3.76086e-07,0.114242,0.0929549,0.172425,0.104948,0.00217546,0.057168,0.234298,0.00296278,0.286863,0.152372,0.0203723,0.218271,0.101607,0.327067,0.172982,0.340936,0.151597,0.0626744,0.191335,0.148574,0.504592,0.155821,2.24667e-10,0.0919008,0.0602373,0.144304,0.15063,0.0973823,0.15503,0.170295,0.0200941,0.137219,0.00238639,0.251466,0.288096,0.11903,0.0838874,0.00806892,0.113145,0.112651,0.186638,0.174776,0.00464715,0.264079,0.249049,0.140533,0.0997756,0.0364628,0.103667,0.113069,0.025556,0.16791,0.00423976,0.585505,0.166967,0.188651,0.0813902,0.184948,0.156261,0.311847,0.511859,0.0590944,0.247324,0.0169521,0.218229,0.231073,0.0020598,0.619906,0.0360851,0.412187,0.131093,0.0434602,0.133616,0.418146,0.36927,0.449036,0.0162067,0.231447,0.18653,0.43956,0.37006,0.42622,0.448797,0.0209277,3.79347e-09,0.36145,0.406019,0.381071,0.580441,0.0863135,0.11074,0.722159,0.390366,0.48809,0.00559336,0.443185,0.522904,0.0199034,0.871256,0.227104,0.518585,0.617852,0.0135352,0.284625,0.504757,0.55194,0.729153,0.28907,0.164197,0.462688,0.287881,0.0556235,0.478174,4.64145e-06,0.468444,0.258219,0.119142,0.243383,0.777351,0.390974,0.73485,0.683217,0.161598,0.751174,0.644754,0.0323708,0.799185,0.37357,0.78509,0.477353,0.452741,0.746954,0.771991,0.20342,0.200493,0.20558,0.300504,0.00348292,0.425963,0.349197,0.383291,0.156104,0.141318,0.411941,0.0961477,0.314438,0.354789,0.163828,0.230581,0.120226,0.28424,0.562405,0.314429,0.181415,0.282286,0.446891,0.616388,0.01635,0.000926901,0.322213,0.656109,0.33942,0.00285083,0.387276,0.0391112,0.0816402,0.537348,0.222037,0.416621,0.416292,0.0252635,0.0457685,0.579431,0.204817,0.452428,0.138871,0.308032,0.166905,0.19783,0.0833851,0.316453,0.48065,0.175199,0.332919,0.0805711,0.0393909,0.0980968,0.365487,0.534741,0.39088,0.363192,0.00266072,0.203486,0.273398,0.375787,0.4466,0.351067,0.275347,9.09657e-05,0.000553931,0.00285094,0.0795725,0.0527347,0.00604105,0.15059,0.386538,0.508064,0.250964,0.383276,0.0243456,0.504711,0.220231,0.00608438,0.196976,0.191517,0.463751,0.00258603,0.307334,0.459728,0.283463,0.0517073,0.135386,0.399569,0.273281,0.0114705,0.275089,0.384593,0.00444763,0.0105648,0.339729,0.197805,0.0153645,0.387069,0.332774,0.00107377,0.299887,0.0814305,0.205413,0.00105378,0.0779009,0.276869,0.205298,3.8422e-10,0.18966,0.036838,0.188263,0.0719199,0.00386277,1.26386e-06,0.19104,0.163057,0.219428,0.208013,0.0900729,0.0953646,0.000872573,0.252184,1.06858e-05,0.255516,0.00176345,0.119514,0.179412,0.193601,0.00215229,0.00221755,0.341681,0.310674,0.21801,0.0015337,0.186804,0.123324,0.199468,0.0325925,0.0933115,0.12405,0.179889,0.0023439,0.27872,0.00376943,0.131118,0.20837,5.77125e-07,5.05887e-15,0.0673329,0.20847,0.266544,0.113092,0.145701,0.229428,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.00404853,0.201602,0.350452,0.154941,0.000318033,0.0986735,0.108462,0.0595618,0.21593,0.000752649,0.220319,0.195218,0.124213,0.259632,2.52161e-06,0.00113527,0.159884,7.46043e-07,0.150733,0.217112,0.00801612,0.00121059,0.185335,0.0723291,0.0367308,0.00371613,0.00166408,2.24734e-10,0.207559,0.010576,0.193031,0.249101,0.115972,0.0273485,0.246105,0.173026,0.200432,0.139785,0.197112,0.0315594,0.156465,0.00899301,0.256963,0.00221189,0.172134,0.176789,0.000163687,0.202137,0.00649151,0.0437875,0.218161,0.0822373,0.0219487,0.106739,0.0536053,2.70035e-05,0.15113,0.078016,0.0407233,0.0537355,0.319922,0.00371523,0.211332,0.187731,0.0025753,0.189559,0.0812887,0.0981146,0.064145,0.121913,0.0638699,0.104603,0.0663259,7.83704e-05,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.286691,0.0687209,0.141729,0.0037817,0.255956,0.200105,0.0280973,0.29837,0.253509,0.177664,0.00482769,0.264413,0.000422974,0.160658,0.206239,0.19924,0.0457735,0.00267717,0.325148,0.115817,0.00206474,0.223831,0.11528,0.00144649,0.0195259,0.281727,0.283218,6.14904e-07,0.164638,0.00225856,0.0935776,0.327622,0.225752,1.8176e-07,3.96708e-06,0.0859274,0.316866,0.171683,0.158847,0.271275,0.071111,0.0404514,0.101021,0.222548,0.0164735,0.157274,0.215705,0.252796,0.205954,0.361435 | ||
|tfbs_overrepresentation_for_novel_motifs=0.699513,0.14394,0.690871,0.855819,0.641468,0.853988,0.937929,1.23863,0.491742,0.221898,1.91835,0.985163,0.436625,0.925331,1.54465,0.667627,1.17594,0.575162,0.452865,0.305559,0.69094,0.242883,0.845342,0.635379,0.743951,1.00973,0.409304,0.842925,0.645155,0.388328,0.795576,2.72118,0.534793,0.439574,4.87657,0.137917,0.596053,0.855276,1.39264,0.469078,0.598234,0.777097,0.718382,1.54087,0.461452,1.72524,2.16194,0.808003,0.69206,0.645308,1.02504,5.1274,0.336258,1.29475,1.45259,0.928548,0.650353,0.892517,0.388177,4.87546,1.25741,0.941709,0.492369,1.14672,0.961293,1.11026,1.54311,1.91674,1.2037,1.75271,0.762094,0.502203,2.41357,1.45054,1.92922,0.414196,0.396746,1.12884,1.20029,0.73687,0.459024,1.14559,0.960908,0.498519,1.39759,0.977977,0.303648,0.381882,1.053,2.0169,1.63834,1.36973,1.23218,0.543775,0.642354,0.560075,0.450952,1.27663,1.05794,0.360456,0.569121,1.22626,1.27082,1.1798,1.09802,4.55594,1.16312,0.921547,0.743661,0.622396,0.703975,1.26794,0.684398,0.830777,1.58942,1.44883,0.553386,0.794219,1.10778,0.547323,1.44203,1.0504,0.850918,0.973172,1.70203,1.12965,0.930979,2.76728,1.48578,0.561252,1.37044,0.798812,1.50051,0.969553,1.65144,0.372828,0.788803,0.843556,1.60823,2.47382,2.06967,1.57016,0.932872,1.27296,1.09989,2.04753,1.08214,2.31409,0.773313,1.33389,0.318511,0.698641,1.37083,0.481626,0.941179,1.78371,1.03563,0.624795,0.744018,0.710709,1.56892,1.35169,1.19946,0.714443,1.11698,0.960047,0.524529,0.936473,0.0768232 | |||
}} | }} | ||
Revision as of 16:37, 26 November 2012
Full id: C4222_Fibroblast_Mast_Smooth_mesenchymal_Myoblast_Preadipocyte_basal
Phase1 CAGE Peaks
| Hg19::chr2:33824285..33824308,- | p2@FAM98A |
| Hg19::chr2:33824309..33824326,- | p3@FAM98A |
| Hg19::chr2:33824336..33824378,- | p1@FAM98A |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
No results for this coexpression
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
No GOStat results
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
| Ontology term | p-value | n |
|---|---|---|
| fibroblast | 2.61e-20 | 76 |
| muscle precursor cell | 6.77e-15 | 58 |
| myoblast | 6.77e-15 | 58 |
| multi-potent skeletal muscle stem cell | 6.77e-15 | 58 |
| muscle cell | 1.38e-13 | 55 |
| electrically responsive cell | 2.58e-13 | 61 |
| electrically active cell | 2.58e-13 | 61 |
| vascular associated smooth muscle cell | 8.50e-13 | 32 |
| smooth muscle cell | 1.45e-12 | 43 |
| smooth muscle myoblast | 1.45e-12 | 43 |
| non-terminally differentiated cell | 1.76e-12 | 106 |
| contractile cell | 6.15e-11 | 59 |
| skin fibroblast | 3.02e-10 | 23 |
| embryonic cell | 3.79e-09 | 250 |
| mesodermal cell | 4.99e-09 | 121 |
| somatic cell | 1.41e-08 | 588 |
| multi fate stem cell | 1.85e-07 | 427 |
| stem cell | 2.31e-07 | 441 |
| somatic stem cell | 3.85e-07 | 433 |
| animal cell | 5.03e-07 | 679 |
| eukaryotic cell | 5.03e-07 | 679 |
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
{{{tfbs_overrepresentation_jaspar}}} |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)
| TF | #promoters | Enrichment | p-value | q-value |
|---|---|---|---|---|
| CCNT2#905 | 3 | 6.33620157696263 | 0.00393075003576489 | 0.0190507031873984 |
| CEBPB#1051 | 3 | 7.97114762582482 | 0.00197418705528856 | 0.0115508191522287 |
| CTCF#10664 | 3 | 5.36025637307503 | 0.006492509252767 | 0.0280241020767785 |
| E2F1#1869 | 3 | 4.90738921487932 | 0.00846098534723939 | 0.0326349613576221 |
| E2F6#1876 | 3 | 5.01715573169739 | 0.0079176980688633 | 0.0323165729488047 |
| EBF1#1879 | 3 | 8.906466846569 | 0.0014152328356098 | 0.00917192070234268 |
| ELF1#1997 | 3 | 4.25809795880754 | 0.0129517987505461 | 0.0463577541967951 |
| GABPB1#2553 | 3 | 7.06768383618217 | 0.00283221282541742 | 0.015447747820857 |
| GATA2#2624 | 3 | 12.744931733554 | 0.000482952770428379 | 0.00437763447238062 |
| HDAC2#3066 | 3 | 13.4156202366263 | 0.000414076139985721 | 0.00392251228879535 |
| IRF1#3659 | 3 | 7.6371637535639 | 0.00224469274729724 | 0.0128407441438887 |
| MAX#4149 | 3 | 6.45255550900712 | 0.00372191383426551 | 0.0187007100421849 |
| MXI1#4601 | 3 | 9.9615716287593 | 0.00101147054125902 | 0.00721416184241965 |
| MYC#4609 | 3 | 5.2222818716094 | 0.00702084375574015 | 0.029524860117002 |
| NANOG#79923 | 3 | 29.2447784810127 | 3.99627955670032e-05 | 0.000739226781123318 |
| NRF1#4899 | 3 | 12.2102794477109 | 0.000549217240102001 | 0.00472174014973764 |
| POU2F2#5452 | 3 | 9.10612405774252 | 0.00132416519268213 | 0.0088367085340913 |
| SIN3A#25942 | 3 | 5.40888472681514 | 0.00631896197799152 | 0.0277533146902501 |
| SIX5#147912 | 3 | 17.086715355459 | 0.000200406054632501 | 0.00239997797726909 |
| SRF#6722 | 3 | 13.7971782621678 | 0.000380661502580019 | 0.00375764713307699 |
| THAP1#55145 | 3 | 31.3691446028513 | 3.23800758564397e-05 | 0.000648215975152522 |
| USF1#7391 | 3 | 6.36149927720796 | 0.0038840405729056 | 0.0190793148673011 |
| YY1#7528 | 3 | 4.91117074985386 | 0.00844145534180826 | 0.0330168959045432 |
| ZNF263#10127 | 3 | 8.22184163701068 | 0.00179904392556587 | 0.0109672162352425 |
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data
This analysis result is provided for C0 - C305 clusters.
