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Coexpression cluster:C79: Difference between revisions

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|gostat_on_coexpression_clusters=GO:0005518!collagen binding!0.0141227416041969!2335$GO:0006953!acute-phase response!0.0141227416041969!2335$GO:0005793!ER-Golgi intermediate compartment!0.0141227416041969!2335$GO:0008201!heparin binding!0.0141227416041969!2335$GO:0002526!acute inflammatory response!0.0141227416041969!2335$GO:0005539!glycosaminoglycan binding!0.0141227416041969!2335$GO:0030247!polysaccharide binding!0.0141227416041969!2335$GO:0005201!extracellular matrix structural constituent!0.0141227416041969!2335$GO:0001871!pattern binding!0.0141227416041969!2335$GO:0007169!transmembrane receptor protein tyrosine kinase signaling pathway!0.0210173083716001!2335$GO:0016477!cell migration!0.0211992764094495!2335$GO:0006954!inflammatory response!0.0230959432654946!2335$GO:0007167!enzyme linked receptor protein signaling pathway!0.0230959432654946!2335$GO:0051674!localization of cell!0.0249028611797951!2335$GO:0006928!cell motility!0.0249028611797951!2335$GO:0005578!proteinaceous extracellular matrix!0.0249028611797951!2335$GO:0009611!response to wounding!0.0249028611797951!2335$GO:0030246!carbohydrate binding!0.0265774428614414!2335$GO:0006952!defense response!0.0307621756616904!2335$GO:0009605!response to external stimulus!0.0316760861886259!2335$GO:0044421!extracellular region part!0.0417735321671555!2335$GO:0022610!biological adhesion!0.0417735321671555!2335$GO:0007155!cell adhesion!0.0417735321671555!2335
|gostat_on_coexpression_clusters=GO:0005518!collagen binding!0.0141227416041969!2335$GO:0006953!acute-phase response!0.0141227416041969!2335$GO:0005793!ER-Golgi intermediate compartment!0.0141227416041969!2335$GO:0008201!heparin binding!0.0141227416041969!2335$GO:0002526!acute inflammatory response!0.0141227416041969!2335$GO:0005539!glycosaminoglycan binding!0.0141227416041969!2335$GO:0030247!polysaccharide binding!0.0141227416041969!2335$GO:0005201!extracellular matrix structural constituent!0.0141227416041969!2335$GO:0001871!pattern binding!0.0141227416041969!2335$GO:0007169!transmembrane receptor protein tyrosine kinase signaling pathway!0.0210173083716001!2335$GO:0016477!cell migration!0.0211992764094495!2335$GO:0006954!inflammatory response!0.0230959432654946!2335$GO:0007167!enzyme linked receptor protein signaling pathway!0.0230959432654946!2335$GO:0051674!localization of cell!0.0249028611797951!2335$GO:0006928!cell motility!0.0249028611797951!2335$GO:0005578!proteinaceous extracellular matrix!0.0249028611797951!2335$GO:0009611!response to wounding!0.0249028611797951!2335$GO:0030246!carbohydrate binding!0.0265774428614414!2335$GO:0006952!defense response!0.0307621756616904!2335$GO:0009605!response to external stimulus!0.0316760861886259!2335$GO:0044421!extracellular region part!0.0417735321671555!2335$GO:0022610!biological adhesion!0.0417735321671555!2335$GO:0007155!cell adhesion!0.0417735321671555!2335
|id=C79
|id=C79
|ontology_enrichment_celltype=CL:0000055!1.79e-37!180;CL:0000057!1.74e-23!75;CL:0000680!2.01e-15!57;CL:0000056!2.01e-15!57;CL:0000355!2.01e-15!57;CL:0000183!5.25e-15!59;CL:0000220!5.49e-15!246;CL:0002321!1.02e-14!248;CL:0000187!3.27e-14!54;CL:0000222!3.01e-13!119;CL:0000393!1.49e-12!60;CL:0000211!1.49e-12!60;CL:0002371!3.77e-10!591;CL:0000192!1.36e-09!42;CL:0000514!1.36e-09!42;CL:0002620!2.31e-09!23;CL:0000144!7.72e-09!625;CL:0000359!3.51e-08!32;CL:0002494!1.12e-07!16;CL:0002334!1.82e-07!12
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0005256!1.12e-20!143;UBERON:0000914!1.88e-19!83;UBERON:0002329!1.88e-19!83;UBERON:0003077!1.88e-19!83;UBERON:0003059!1.88e-19!83;UBERON:0007282!1.88e-19!83;UBERON:0009618!1.88e-19!83;UBERON:0007285!1.88e-19!83;UBERON:0000468!3.01e-19!659;UBERON:0004290!2.28e-17!70;UBERON:0000486!8.23e-17!82;UBERON:0003914!2.40e-16!118;UBERON:0000475!6.76e-16!365;UBERON:0002100!1.11e-15!216;UBERON:0000490!2.76e-15!138;UBERON:0004872!3.83e-15!84;UBERON:0001134!1.26e-14!61;UBERON:0002036!1.26e-14!61;UBERON:0003082!1.26e-14!61;UBERON:0000119!1.55e-14!312;UBERON:0002385!2.02e-14!63;UBERON:0001015!2.02e-14!63;UBERON:0000383!2.02e-14!63;UBERON:0000483!4.30e-14!309;UBERON:0000467!2.50e-13!625;UBERON:0002049!2.96e-13!79;UBERON:0007798!2.96e-13!79;UBERON:0000480!4.53e-13!626;UBERON:0000481!7.13e-12!347;UBERON:0003104!9.36e-11!238;UBERON:0009142!9.36e-11!238;UBERON:0000055!2.24e-10!69;UBERON:0001981!3.73e-10!60;UBERON:0007500!3.73e-10!60;UBERON:0004537!3.73e-10!60;UBERON:0006965!3.73e-10!60;UBERON:0001637!4.43e-10!42;UBERON:0003509!4.43e-10!42;UBERON:0004572!4.43e-10!42;UBERON:0004535!4.44e-10!110;UBERON:0001009!5.07e-10!113;UBERON:0003102!6.48e-10!95;UBERON:0000477!8.58e-10!286;UBERON:0000922!9.94e-10!612;UBERON:0002050!1.57e-09!605;UBERON:0005423!1.57e-09!605;UBERON:0000923!1.85e-09!604;UBERON:0005291!1.85e-09!604;UBERON:0006598!1.85e-09!604;UBERON:0002532!1.85e-09!604;UBERON:0002199!3.07e-09!45;UBERON:0002416!3.07e-09!45;UBERON:0004111!1.49e-08!241;UBERON:0000926!4.67e-08!448;UBERON:0004120!4.67e-08!448;UBERON:0006603!4.67e-08!448;UBERON:0004573!5.31e-08!33;UBERON:0004571!5.31e-08!33;UBERON:0004923!5.74e-08!57;UBERON:0002097!9.16e-08!40;UBERON:0000948!1.31e-07!24;UBERON:0005498!1.31e-07!24;UBERON:0004140!1.31e-07!24;UBERON:0009881!1.31e-07!24;UBERON:0004141!1.31e-07!24;UBERON:0003084!1.31e-07!24;UBERON:0007005!1.31e-07!24;UBERON:0004139!1.31e-07!24;UBERON:0004291!1.31e-07!24;UBERON:0007100!3.55e-07!27
}}
}}

Revision as of 14:57, 21 May 2012


Full id: C79_chorionic_Chondrocyte_Cardiac_Smooth_Fibroblast_Preadipocyte_Mesenchymal



Phase1 CAGE Peaks

Hg19::chr2:216225840..216225880,-p@chr2:216225840..216225880
-
Hg19::chr2:216226019..216226027,-p@chr2:216226019..216226027
-
Hg19::chr2:216226037..216226109,-p@chr2:216226037..216226109
-
Hg19::chr2:216226202..216226289,-p@chr2:216226202..216226289
-
Hg19::chr2:216226270..216226299,+p@chr2:216226270..216226299
+
Hg19::chr2:216226295..216226355,-p@chr2:216226295..216226355
-
Hg19::chr2:216226715..216226720,-p@chr2:216226715..216226720
-
Hg19::chr2:216226723..216226776,-p@chr2:216226723..216226776
-
Hg19::chr2:216226780..216226807,-p@chr2:216226780..216226807
-
Hg19::chr2:216229624..216229711,-p@chr2:216229624..216229711
-
Hg19::chr2:216230236..216230260,+p@chr2:216230236..216230260
+
Hg19::chr2:216230257..216230303,-p49@FN1
Hg19::chr2:216230308..216230359,-p50@FN1
Hg19::chr2:216232618..216232759,-p12@FN1
Hg19::chr2:216235008..216235020,-p70@FN1
Hg19::chr2:216235036..216235163,-p26@FN1
Hg19::chr2:216236330..216236334,-p@chr2:216236330..216236334
-
Hg19::chr2:216236659..216236746,-p38@FN1
Hg19::chr2:216236755..216236764,-p75@FN1
Hg19::chr2:216236789..216236803,-p64@FN1
Hg19::chr2:216236849..216236935,-p36@FN1
Hg19::chr2:216236941..216236998,-p45@FN1
Hg19::chr2:216236944..216236994,+p@chr2:216236944..216236994
+
Hg19::chr2:216236997..216237046,+p@chr2:216236997..216237046
+
Hg19::chr2:216237000..216237103,-p28@FN1
Hg19::chr2:216237128..216237139,-p79@FN1
Hg19::chr2:216237349..216237362,-p67@FN1
Hg19::chr2:216238037..216238075,+p@chr2:216238037..216238075
+
Hg19::chr2:216238068..216238142,-p31@FN1
Hg19::chr2:216239959..216240125,-p4@FN1
Hg19::chr2:216240035..216240051,+p@chr2:216240035..216240051
+
Hg19::chr2:216240376..216240402,+p@chr2:216240376..216240402
+
Hg19::chr2:216240380..216240381,-p82@FN1
Hg19::chr2:216240386..216240458,-p23@FN1
Hg19::chr2:216241210..216241264,+p@chr2:216241210..216241264
+
Hg19::chr2:216241247..216241253,-p71@FN1
Hg19::chr2:216241256..216241335,-p10@FN1
Hg19::chr2:216241304..216241361,+p@chr2:216241304..216241361
+
Hg19::chr2:216241339..216241404,-p7@FN1
Hg19::chr2:216242889..216242900,+p@chr2:216242889..216242900
+
Hg19::chr2:216242906..216242955,+p@chr2:216242906..216242955
+
Hg19::chr2:216242925..216242993,-p27@FN1
Hg19::chr2:216243869..216243940,+p@chr2:216243869..216243940
+
Hg19::chr2:216243872..216244063,-p@chr2:216243872..216244063
-
Hg19::chr2:216243953..216243994,+p@chr2:216243953..216243994
+
Hg19::chr2:216244346..216244358,-p@chr2:216244346..216244358
-
Hg19::chr2:216244391..216244398,-p@chr2:216244391..216244398
-
Hg19::chr2:216245562..216245577,-p58@FN1
Hg19::chr2:216245579..216245596,-p57@FN1
Hg19::chr2:216245602..216245652,-p33@FN1
Hg19::chr2:216245657..216245732,-p18@FN1
Hg19::chr2:216245737..216245751,-p65@FN1
Hg19::chr2:216245756..216245767,-p62@FN1
Hg19::chr2:216245779..216245803,-p52@FN1
Hg19::chr2:216246957..216246989,+p@chr2:216246957..216246989
+
Hg19::chr2:216246960..216247057,-p13@FN1
Hg19::chr2:216247013..216247028,+p@chr2:216247013..216247028
+
Hg19::chr2:216248054..216248100,+p@chr2:216248054..216248100
+
Hg19::chr2:216248075..216248078,-p76@FN1
Hg19::chr2:216248091..216248096,-p72@FN1
Hg19::chr2:216248100..216248102,-p80@FN1
Hg19::chr2:216248106..216248212,-p11@FN1
Hg19::chr2:216248785..216248799,-p32@FN1
Hg19::chr2:216248805..216248814,-p40@FN1
Hg19::chr2:216248820..216248848,-p15@FN1
Hg19::chr2:216248830..216248863,+p@chr2:216248830..216248863
+
Hg19::chr2:216248853..216248891,-p2@FN1
Hg19::chr2:216248896..216248910,-p24@FN1
Hg19::chr2:216249575..216249598,+p@chr2:216249575..216249598
+
Hg19::chr2:216249608..216249613,-p68@FN1
Hg19::chr2:216249615..216249696,-p14@FN1
Hg19::chr2:216251434..216251483,+p@chr2:216251434..216251483
+
Hg19::chr2:216251438..216251451,-p@chr2:216251438..216251451
-
Hg19::chr2:216251453..216251544,-p@chr2:216251453..216251544
-
Hg19::chr2:216251489..216251515,+p@chr2:216251489..216251515
+
Hg19::chr2:216251537..216251550,+p@chr2:216251537..216251550
+
Hg19::chr2:216251545..216251580,-p@chr2:216251545..216251580
-
Hg19::chr2:216251581..216251601,-p@chr2:216251581..216251601
-
Hg19::chr2:216251602..216251632,-p@chr2:216251602..216251632
-
Hg19::chr2:216251633..216251692,-p@chr2:216251633..216251692
-
Hg19::chr2:216252936..216252952,+p@chr2:216252936..216252952
+
Hg19::chr2:216252958..216252995,+p@chr2:216252958..216252995
+
Hg19::chr2:216252959..216253014,-p@chr2:216252959..216253014
-
Hg19::chr2:216253021..216253036,-p@chr2:216253021..216253036
-
Hg19::chr2:216256353..216256364,+p@chr2:216256353..216256364
+
Hg19::chr2:216256377..216256419,-p@chr2:216256377..216256419
-
Hg19::chr2:216256378..216256407,+p@chr2:216256378..216256407
+
Hg19::chr2:216256414..216256432,+p@chr2:216256414..216256432
+
Hg19::chr2:216256427..216256438,-p@chr2:216256427..216256438
-
Hg19::chr2:216256433..216256470,+p@chr2:216256433..216256470
+
Hg19::chr2:216256439..216256547,-p5@FN1
Hg19::chr2:216256489..216256512,+p@chr2:216256489..216256512
+
Hg19::chr2:216256725..216256736,-p74@FN1
Hg19::chr2:216257754..216257766,-p69@FN1
Hg19::chr2:216257770..216257790,-p60@FN1
Hg19::chr2:216259188..216259201,-p@chr2:216259188..216259201
-
Hg19::chr2:216259270..216259317,+p@chr2:216259270..216259317
+
Hg19::chr2:216259278..216259288,-p51@FN1
Hg19::chr2:216259298..216259308,-p55@FN1
Hg19::chr2:216259313..216259329,-p46@FN1
Hg19::chr2:216259325..216259350,+p@chr2:216259325..216259350
+
Hg19::chr2:216259334..216259354,-p41@FN1
Hg19::chr2:216259354..216259419,+p@chr2:216259354..216259419
+
Hg19::chr2:216259356..216259399,-p17@FN1
Hg19::chr2:216259404..216259444,-p21@FN1
Hg19::chr2:216259445..216259455,-p53@FN1
Hg19::chr2:216261849..216261862,+p@chr2:216261849..216261862
+
Hg19::chr2:216261870..216261879,+p@chr2:216261870..216261879
+
Hg19::chr2:216261885..216261914,+p@chr2:216261885..216261914
+
Hg19::chr2:216261906..216261920,-p@chr2:216261906..216261920
-
Hg19::chr2:216262426..216262440,-p56@FN1
Hg19::chr2:216262447..216262454,-p66@FN1
Hg19::chr2:216262464..216262489,-p25@FN1
Hg19::chr2:216262492..216262555,-p6@FN1
Hg19::chr2:216262556..216262578,-p20@FN1
Hg19::chr2:216264013..216264051,+p@chr2:216264013..216264051
+
Hg19::chr2:216264027..216264048,-p34@FN1
Hg19::chr2:216264051..216264090,-p3@FN1
Hg19::chr2:216269109..216269248,-p@chr2:216269109..216269248
-
Hg19::chr2:216269135..216269225,+p@chr2:216269135..216269225
+
Hg19::chr2:216269250..216269274,-p@chr2:216269250..216269274
-
Hg19::chr2:216269265..216269289,+p@chr2:216269265..216269289
+
Hg19::chr2:216269285..216269305,-p@chr2:216269285..216269305
-
Hg19::chr2:216269309..216269333,-p@chr2:216269309..216269333
-
Hg19::chr2:216269322..216269342,+p@chr2:216269322..216269342
+
Hg19::chr2:216269340..216269352,-p@chr2:216269340..216269352
-
Hg19::chr2:216269367..216269374,-p@chr2:216269367..216269374
-
Hg19::chr2:216269379..216269384,-p@chr2:216269379..216269384
-
Hg19::chr2:216270982..216270997,+p@chr2:216270982..216270997
+
Hg19::chr2:216270984..216271000,-p@chr2:216270984..216271000
-
Hg19::chr2:216271005..216271137,-p@chr2:216271005..216271137
-
Hg19::chr2:216271094..216271145,+p@chr2:216271094..216271145
+
Hg19::chr2:216271143..216271154,-p@chr2:216271143..216271154
-
Hg19::chr2:216271146..216271196,+p@chr2:216271146..216271196
+
Hg19::chr2:216271160..216271176,-p@chr2:216271160..216271176
-
Hg19::chr2:216271178..216271208,-p@chr2:216271178..216271208
-
Hg19::chr2:216271223..216271235,-p@chr2:216271223..216271235
-
Hg19::chr2:216271841..216271920,+p@chr2:216271841..216271920
+
Hg19::chr2:216271872..216271915,-p@chr2:216271872..216271915
-
Hg19::chr2:216271920..216271987,-p@chr2:216271920..216271987
-
Hg19::chr2:216271921..216271932,+p@chr2:216271921..216271932
+
Hg19::chr2:216271985..216272019,+p@chr2:216271985..216272019
+
Hg19::chr2:216271991..216272051,-p@chr2:216271991..216272051
-
Hg19::chr2:216272837..216272858,+p@chr2:216272837..216272858
+
Hg19::chr2:216272850..216272854,-p@chr2:216272850..216272854
-
Hg19::chr2:216272860..216272923,-p@chr2:216272860..216272923
-
Hg19::chr2:216273040..216273062,+p@chr2:216273040..216273062
+
Hg19::chr2:216273041..216273156,-p@chr2:216273041..216273156
-
Hg19::chr2:216274317..216274350,-p43@FN1
Hg19::chr2:216274354..216274463,-p8@FN1
Hg19::chr2:216274423..216274443,+p@chr2:216274423..216274443
+
Hg19::chr2:216274641..216274703,+p@chr2:216274641..216274703
+
Hg19::chr2:216274684..216274712,-p37@FN1
Hg19::chr2:216274715..216274759,-p22@FN1
Hg19::chr2:216274738..216274750,+p@chr2:216274738..216274750
+
Hg19::chr2:216274762..216274777,-p48@FN1
Hg19::chr2:216274784..216274843,-p16@FN1
Hg19::chr2:216274786..216274797,+p@chr2:216274786..216274797
+
Hg19::chr2:216274803..216274815,+p@chr2:216274803..216274815
+
Hg19::chr2:216279555..216279566,+p@chr2:216279555..216279566
+
Hg19::chr2:216279570..216279641,+p@chr2:216279570..216279641
+
Hg19::chr2:216279600..216279620,-p@chr2:216279600..216279620
-
Hg19::chr2:216279623..216279686,-p@chr2:216279623..216279686
-
Hg19::chr2:216279653..216279654,+p@chr2:216279653..216279654
+
Hg19::chr2:216283958..216283993,+p@chr2:216283958..216283993
+
Hg19::chr2:216283990..216284004,-p@chr2:216283990..216284004
-
Hg19::chr2:216284007..216284022,+p@chr2:216284007..216284022
+
Hg19::chr2:216284024..216284054,+p@chr2:216284024..216284054
+
Hg19::chr2:216284048..216284059,-p@chr2:216284048..216284059
-
Hg19::chr2:216284075..216284086,-p@chr2:216284075..216284086
-
Hg19::chr2:216285392..216285435,+p@chr2:216285392..216285435
+
Hg19::chr2:216285416..216285421,-p@chr2:216285416..216285421
-
Hg19::chr2:216285430..216285470,-p@chr2:216285430..216285470
-
Hg19::chr2:216285441..216285489,+p@chr2:216285441..216285489
+
Hg19::chr2:216285472..216285532,-p30@FN1
Hg19::chr2:216285491..216285502,+p@chr2:216285491..216285502
+
Hg19::chr2:216286809..216286870,+p@chr2:216286809..216286870
+
Hg19::chr2:216286835..216286854,-p@chr2:216286835..216286854
-
Hg19::chr2:216286866..216286877,-p@chr2:216286866..216286877
-
Hg19::chr2:216286896..216286907,+p@chr2:216286896..216286907
+
Hg19::chr2:216286896..216286912,-p@chr2:216286896..216286912
-
Hg19::chr2:216286919..216286942,+p@chr2:216286919..216286942
+
Hg19::chr2:216286925..216286942,-p@chr2:216286925..216286942
-
Hg19::chr2:216286951..216286963,-p@chr2:216286951..216286963
-
Hg19::chr2:216288084..216288131,+p@chr2:216288084..216288131
+
Hg19::chr2:216288096..216288100,-p@chr2:216288096..216288100
-
Hg19::chr2:216288105..216288140,-p@chr2:216288105..216288140
-
Hg19::chr2:216288133..216288158,+p@chr2:216288133..216288158
+
Hg19::chr2:216288145..216288156,-p@chr2:216288145..216288156
-
Hg19::chr2:216288165..216288235,-p@chr2:216288165..216288235
-
Hg19::chr2:216288167..216288200,+p@chr2:216288167..216288200
+
Hg19::chr2:216288213..216288229,+p@chr2:216288213..216288229
+
Hg19::chr2:216288238..216288248,-p@chr2:216288238..216288248
-
Hg19::chr2:216288862..216288879,+p@chr2:216288862..216288879
+
Hg19::chr2:216288881..216288922,+p@chr2:216288881..216288922
+
Hg19::chr2:216288893..216288957,-p@chr2:216288893..216288957
-
Hg19::chr2:216288924..216288958,+p@chr2:216288924..216288958
+
Hg19::chr2:216288963..216288992,+p@chr2:216288963..216288992
+
Hg19::chr2:216288963..216289017,-p@chr2:216288963..216289017
-
Hg19::chr2:216289001..216289015,+p@chr2:216289001..216289015
+
Hg19::chr2:216289020..216289031,-p@chr2:216289020..216289031
-
Hg19::chr2:216289040..216289056,-p@chr2:216289040..216289056
-
Hg19::chr2:216289824..216289844,+p@chr2:216289824..216289844
+
Hg19::chr2:216289849..216289895,+p@chr2:216289849..216289895
+
Hg19::chr2:216289851..216289877,-p42@FN1
Hg19::chr2:216289880..216289901,-p44@FN1
Hg19::chr2:216289907..216289919,-p47@FN1
Hg19::chr2:216289922..216290014,-p9@FN1
Hg19::chr2:216289931..216289975,+p@chr2:216289931..216289975
+
Hg19::chr2:216292922..216293012,-p@chr2:216292922..216293012
-
Hg19::chr2:216292925..216292962,+p@chr2:216292925..216292962
+
Hg19::chr2:216292976..216293025,+p@chr2:216292976..216293025
+
Hg19::chr2:216293013..216293070,-p@chr2:216293013..216293070
-
Hg19::chr2:216293031..216293041,+p@chr2:216293031..216293041
+
Hg19::chr2:216295443..216295487,+p@chr2:216295443..216295487
+
Hg19::chr2:216295480..216295498,-p@chr2:216295480..216295498
-
Hg19::chr2:216295498..216295542,+p@chr2:216295498..216295542
+
Hg19::chr2:216295510..216295544,-p@chr2:216295510..216295544
-
Hg19::chr2:216295550..216295567,-p@chr2:216295550..216295567
-
Hg19::chr2:216296541..216296600,+p@chr2:216296541..216296600
+
Hg19::chr2:216296603..216296619,+p@chr2:216296603..216296619
+
Hg19::chr2:216296612..216296623,-p@chr2:216296612..216296623
-
Hg19::chr2:216296625..216296645,+p@chr2:216296625..216296645
+
Hg19::chr2:216296635..216296642,-p@chr2:216296635..216296642
-
Hg19::chr2:216296649..216296678,-p@chr2:216296649..216296678
-
Hg19::chr2:216298040..216298094,+p@chr2:216298040..216298094
+
Hg19::chr2:216298063..216298110,-p29@FN1
Hg19::chr2:216298108..216298152,+p@chr2:216298108..216298152
+
Hg19::chr2:216298113..216298192,-p19@FN1
Hg19::chr2:216299432..216299457,+p@chr2:216299432..216299457
+
Hg19::chr2:216299437..216299441,-p@chr2:216299437..216299441
-
Hg19::chr2:216299443..216299554,-p@chr2:216299443..216299554
-
Hg19::chr2:216299463..216299527,+p@chr2:216299463..216299527
+
Hg19::chr2:216300364..216300450,+p@chr2:216300364..216300450
+
Hg19::chr2:216300557..216300586,+p2@ENST00000412951
Hg19::chr2:216300597..216300650,+p1@ENST00000412951
Hg19::chr2:216300784..216300798,-p1@FN1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0005518collagen binding0.0141227416041969
GO:0006953acute-phase response0.0141227416041969
GO:0005793ER-Golgi intermediate compartment0.0141227416041969
GO:0008201heparin binding0.0141227416041969
GO:0002526acute inflammatory response0.0141227416041969
GO:0005539glycosaminoglycan binding0.0141227416041969
GO:0030247polysaccharide binding0.0141227416041969
GO:0005201extracellular matrix structural constituent0.0141227416041969
GO:0001871pattern binding0.0141227416041969
GO:0007169transmembrane receptor protein tyrosine kinase signaling pathway0.0210173083716001
GO:0016477cell migration0.0211992764094495
GO:0006954inflammatory response0.0230959432654946
GO:0007167enzyme linked receptor protein signaling pathway0.0230959432654946
GO:0051674localization of cell0.0249028611797951
GO:0006928cell motility0.0249028611797951
GO:0005578proteinaceous extracellular matrix0.0249028611797951
GO:0009611response to wounding0.0249028611797951
GO:0030246carbohydrate binding0.0265774428614414
GO:0006952defense response0.0307621756616904
GO:0009605response to external stimulus0.0316760861886259
GO:0044421extracellular region part0.0417735321671555
GO:0022610biological adhesion0.0417735321671555
GO:0007155cell adhesion0.0417735321671555



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
trunk mesenchyme1.12e-20143
somite1.88e-1983
paraxial mesoderm1.88e-1983
presomitic mesoderm1.88e-1983
presumptive segmental plate1.88e-1983
trunk paraxial mesoderm1.88e-1983
presumptive paraxial mesoderm1.88e-1983
multi-cellular organism3.01e-19659
dermomyotome2.28e-1770
multilaminar epithelium8.23e-1782
epithelial tube2.40e-16118
organism subdivision6.76e-16365
trunk1.11e-15216
unilaminar epithelium2.76e-15138
splanchnic layer of lateral plate mesoderm3.83e-1584
skeletal muscle tissue1.26e-1461
striated muscle tissue1.26e-1461
myotome1.26e-1461
cell layer1.55e-14312
muscle tissue2.02e-1463
musculature2.02e-1463
musculature of body2.02e-1463
epithelium4.30e-14309
anatomical system2.50e-13625
vasculature2.96e-1379
vascular system2.96e-1379
anatomical group4.53e-13626
multi-tissue structure7.13e-12347
mesenchyme9.36e-11238
entire embryonic mesenchyme9.36e-11238
vessel2.24e-1069
blood vessel3.73e-1060
epithelial tube open at both ends3.73e-1060
blood vasculature3.73e-1060
vascular cord3.73e-1060
artery4.43e-1042
arterial blood vessel4.43e-1042
arterial system4.43e-1042
cardiovascular system4.44e-10110
circulatory system5.07e-10113
surface structure6.48e-1095
anatomical cluster8.58e-10286
embryo9.94e-10612
embryonic structure1.57e-09605
developing anatomical structure1.57e-09605
germ layer1.85e-09604
embryonic tissue1.85e-09604
presumptive structure1.85e-09604
epiblast (generic)1.85e-09604
integument3.07e-0945
integumental system3.07e-0945
anatomical conduit1.49e-08241
mesoderm4.67e-08448
mesoderm-derived structure4.67e-08448
presumptive mesoderm4.67e-08448
systemic artery5.31e-0833
systemic arterial system5.31e-0833
organ component layer5.74e-0857
skin of body9.16e-0840
heart1.31e-0724
primitive heart tube1.31e-0724
primary heart field1.31e-0724
anterior lateral plate mesoderm1.31e-0724
heart tube1.31e-0724
heart primordium1.31e-0724
cardiac mesoderm1.31e-0724
cardiogenic plate1.31e-0724
heart rudiment1.31e-0724
primary circulatory organ3.55e-0727


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data


No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data


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