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{{f5samples
 
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000065,UBERON:0000072,UBERON:0000077,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000915,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0001004,UBERON:0001005,UBERON:0001007,UBERON:0001041,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0001558,UBERON:0002050,UBERON:0002224,UBERON:0002532,UBERON:0003104,UBERON:0003126,UBERON:0003127,UBERON:0003258,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004921,UBERON:0005423,UBERON:0007026,UBERON:0007196,UBERON:0008947,UBERON:0009142
+
|DRA_sample_Accession=CAGE@SAMD00005467
 +
|accession_numbers=CAGE;DRX008754;DRR009626;DRZ001051;DRZ002436;DRZ012401;DRZ013786
 +
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0003126,UBERON:0003127,UBERON:0002100,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0001005,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915
 
|ancestors_in_cell_lineage_facet=
 
|ancestors_in_cell_lineage_facet=
 
|ancestors_in_disease_facet=
 
|ancestors_in_disease_facet=
 +
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000999,FF:0000004,FF:0010058
 
|comment=
 
|comment=
 
|created_by=
 
|created_by=
 
|creation_date=
 
|creation_date=
 +
|data_phase=2
 +
|datafreeze_phase=2
 
|def=
 
|def=
 +
|expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.26!178.97!EHF;;chr1:201979703..201979721,+!p2@ELF3!1.94!85.49!ELF3;;chr1:201979743..201979762,+!p1@ELF3!1.90!78.18!ELF3;;chr6:34524093..34524135,-!p1@SPDEF!1.90!77.84!SPDEF;;chr19:46801639..46801699,+!p1@HIF3A!1.82!64.54!HIF3A;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.78!59.55!PEG3;;chr22:29196433..29196445,-!p4@XBP1!1.70!54.22!XBP1;;chr2:122042770..122042785,-!p1@TFCP2L1!1.69!47.90!TFCP2L1;;chr12:52437488..52437507,+!p2@NR4A1!1.68!46.57!NR4A1;;chr15:42749722..42749739,-!p2@ZFP106!1.63!73.85!ZFP106;;chr11:113930425..113930471,+!p1@ZBTB16!1.60!55.22!ZBTB16;;chr2:19558373..19558392,-!p1@OSR1!1.51!83.83!OSR1;;chr5:158526917..158526932,-!p1@EBF1!1.51!75.51!EBF1;;chr1:170632285..170632309,+!p1@PRRX1!1.50!34.60!PRRX1;;chr8:23540441..23540466,-!p1@NKX3-1!1.47!55.89!NKX3-1;;chr6:1312325..1312340,+!p1@FOXQ1!1.46!44.91!FOXQ1;;chr8:25902876..25902936,-!p1@EBF2!1.46!27.94!EBF2;;chr17:53342311..53342400,+!p1@HLF!1.45!31.27!HLF;;chr11:34535297..34535317,-!p1@ELF5!1.41!24.62!ELF5;;chr22:38380543..38380569,-!p1@SOX10!1.40!24.28!SOX10;;chr3:181429704..181429722,+!p1@SOX2!1.40!23.95!SOX2;;chr1:40105299..40105326,-!p1@HEYL!1.40!23.95!HEYL;;chr20:62680984..62680999,-!p1@SOX18!1.38!30.60!SOX18;;chr14:37131058..37131139,+!p1@PAX9!1.38!22.95!PAX9;;chrY:21906594..21906622,-!p1@KDM5D!1.38!22.95!KDM5D;;chr6:134210243..134210257,+!p1@TCF21!1.37!22.29!TCF21;;chr14:38064429..38064486,-!p1@FOXA1!1.36!21.96!FOXA1;;chr19:46800289..46800327,+!p2@HIF3A!1.34!20.96!HIF3A;;chr21:39870339..39870443,-!p1@ERG!1.34!20.96!ERG;;chr17:74137321..74137337,-!p1@FOXJ1!1.33!20.62!FOXJ1;;chr17:80797886..80797906,-!p1@ZNF750!1.33!20.29!ZNF750;;chr11:34642656..34642667,+!p2@EHF!1.33!20.29!EHF;;chr22:29196492..29196503,-!p3@XBP1!1.31!30.27!XBP1;;chr5:2751762..2751784,-!p1@IRX2!1.31!19.29!IRX2;;chr7:15726296..15726315,-!p1@MEOX2!1.30!18.96!MEOX2;;chr7:73038839..73038862,-!p1@MLXIPL!1.29!18.63!MLXIPL;;chr10:131762504..131762555,-!p1@EBF3!1.29!18.30!EBF3;;chr16:79634624..79634642,-!p1@MAF!1.27!67.86!MAF;;chr14:61116183..61116208,-!p1@SIX1!1.27!65.87!SIX1;;chr7:113726357..113726443,+!p1@FOXP2!1.27!30.27!FOXP2;;chr8:102504651..102504683,+!p1@GRHL2!1.27!17.63!GRHL2;;chr11:129245526..129245553,+!p1@BARX2!1.27!17.63!BARX2;;chr8:10588010..10588030,-!p1@SOX7!1.25!16.63!SOX7;;chr7:100065686..100065701,-!p2@TSC22D4!1.24!16.30!TSC22D4;;chr6:1389789..1389821,+!p1@FOXF2!1.23!21.96!FOXF2;;chr1:170633348..170633399,+!p2@PRRX1!1.23!21.62!PRRX1;;chr1:209979467..209979494,-!p1@IRF6!1.23!17.96!IRF6;;chr1:203055129..203055147,-!p1@MYOG!1.23!15.97!MYOG;;chr5:134369879..134369898,-!p2@PITX1!1.23!15.97!PITX1;;chr7:19157248..19157268,-!p1@TWIST1!1.22!43.25!TWIST1;;chr1:61548374..61548415,+!p4@NFIA!1.21!28.28!NFIA;;chr18:22932080..22932170,-!p1@ZNF521!1.20!62.87!ZNF521;;chr3:189507432..189507459,+!p1@TP63!1.20!14.97!TP63;;chr1:61548225..61548299,+!p1@NFIA!1.18!180.30!NFIA;;chr11:34535332..34535347,-!p2@ELF5!1.18!14.30!ELF5;;chr20:50179368..50179392,-!p2@NFATC2!1.17!17.63!NFATC2;;chr9:132427883..132427951,+!p2@PRRX2!1.17!13.64!PRRX2;;chr22:19748231..19748317,+!p1@TBX1!1.17!13.64!TBX1;;chr4:57547454..57547469,-!p1@HOPX!1.17!13.64!HOPX;;chr6:144329384..144329405,-!p1@PLAGL1!1.16!155.02!PLAGL1;;chr11:34645791..34645836,+!p3@EHF!1.16!13.31!EHF;;chr6:1610293..1610310,+!p1@FOXC1!1.15!21.96!FOXC1;;chr3:126076242..126076257,-!p1@KLF15!1.15!16.30!KLF15;;chr1:170633262..170633285,+!p3@PRRX1!1.15!14.97!PRRX1;;chr3:169381420..169381535,-!p1@MECOM!1.14!14.97!MECOM;;chr16:86544113..86544145,+!p1@FOXF1!1.12!15.30!FOXF1;;chr8:55370487..55370503,+!p1@SOX17!1.12!12.31!SOX17;;chr9:102584159..102584174,+!p2@NR4A3!1.11!21.29!NR4A3;;chr20:55204351..55204377,+!p1@TFAP2C!1.11!15.30!TFAP2C;;chr2:145277882..145277967,-!p3@ZEB2!1.10!20.29!ZEB2;;chr18:45663490..45663528,-!p2@ZBTB7C!1.10!11.64!ZBTB7C;;chr8:106330656..106330684,+!p1@ZFPM2!1.09!29.94!ZFPM2;;chr13:73633131..73633149,+!p1@KLF5!1.08!118.09!KLF5;;chr16:79634595..79634620,-!p2@MAF!1.08!20.29!MAF;;chr6:34524049..34524089,-!p2@SPDEF!1.08!10.98!SPDEF;;chr7:97840743..97840786,+!p1@BHLHA15!1.08!10.98!BHLHA15;;chr1:151804244..151804310,-!p1@RORC!1.08!10.98!RORC;;chr17:1959369..1959388,+!p2@HIC1!1.07!28.28!HIC1;;chr11:125034640..125034655,+!p1@PKNOX2!1.07!10.65!PKNOX2;;chr2:66662281..66662308,+!p1@MEIS1!1.06!36.93!MEIS1;;chr15:57511609..57511651,+!p2@TCF12!1.06!17.63!TCF12;;chr1:61548069..61548102,+!p3@NFIA!1.05!24.95!NFIA;;chr3:114819124..114819200,-!p3@ZBTB20!1.05!24.28!ZBTB20;;chr6:144289132..144289134,-!p3@PLAGL1!1.05!24.28!PLAGL1;;chr3:126076264..126076305,-!p2@KLF15!1.05!14.30!KLF15;;chr9:132427972..132428056,+!p1@PRRX2!1.05!13.31!PRRX2;;chr8:93107451..93107468,-!p2@RUNX1T1!1.05!10.31!RUNX1T1;;chr15:96873984..96873999,+!p3@NR2F2!1.04!73.85!NR2F2;;chr5:50679228..50679288,+!p1@ISL1!1.04!9.98!ISL1;;chr1:170632683..170632696,+!p12@PRRX1!1.04!9.98!PRRX1;;chr2:180524914..180524925,-!p17@ZNF385B!1.04!9.98!ZNF385B;;chr3:181429741..181429767,+!p2@SOX2!1.04!9.98!SOX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.03!51.56!CREB3L1;;chr1:214161272..214161322,+!p1@PROX1!1.03!13.64!PROX1;;chr16:1031762..1031781,+!p1@SOX8!1.03!9.65!SOX8;;chr12:96588368..96588394,+!p3@ELK3!1.02!25.95!ELK3;;chr5:134369905..134369972,-!p1@PITX1!1.00!13.97!PITX1;;chr5:2751785..2751808,-!p2@IRX2!1.00!8.98!IRX2;;chr12:24102576..24102623,-!p2@SOX5!1.00!8.98!SOX5;;chr17:41739283..41739297,-!p1@MEOX1!1.00!8.98!MEOX1;;chr22:29196547..29196563,-!p2@XBP1!0.99!327.67!XBP1;;chr4:174451370..174451387,-!p1@HAND2!0.98!8.65!HAND2;;chr11:113930401..113930422,+!p3@ZBTB16!0.98!8.65!ZBTB16;;chr5:158527104..158527135,-!p4@EBF1!0.98!8.65!EBF1;;chr5:172662197..172662216,-!p1@NKX2-5!0.98!8.65!NKX2-5;;chr9:14180778..14180808,-!p15@NFIB!0.98!8.65!NFIB;;chr6:19837592..19837621,+!p1@ID4!0.97!52.89!ID4;;chr2:60780753..60780800,-!p1@BCL11A!0.97!42.58!BCL11A;;chr11:46299539..46299620,+!p2@CREB3L1!0.97!14.30!CREB3L1;;chr2:10091815..10091864,+!p1@GRHL1!0.97!11.31!GRHL1;;chr3:21792682..21792720,-!p1@ZNF385D!0.97!8.32!ZNF385D;;chr12:81101404..81101421,+!p1@MYF6!0.97!8.32!MYF6;;chr21:38071430..38071456,+!p1@SIM2!0.97!8.32!SIM2;;chr18:77155922..77155939,+!p1@NFATC1!0.96!22.62!NFATC1;;chr6:91006518..91006570,-!p1@BACH2!0.96!18.96!BACH2;;chr20:51588873..51588953,+!p1@TSHZ2!0.96!10.98!TSHZ2;;chr1:170632959..170632987,+!p4@PRRX1!0.96!8.98!PRRX1;;chrX:131623044..131623089,-!p1@MBNL3!0.95!34.26!MBNL3;;chr18:42260840..42260860,+!p2@SETBP1!0.95!7.98!SETBP1;;chr8:93115274..93115323,-!p4@RUNX1T1!0.95!7.98!RUNX1T1;;chr9:14314131..14314147,-!p2@NFIB!0.94!44.91!NFIB;;chr1:61547894..61547968,+!p2@NFIA!0.94!22.95!NFIA;;chr13:72441315..72441454,-!p1@DACH1!0.94!15.97!DACH1;;chr8:99956662..99956684,+!p1@OSR2!0.94!11.98!OSR2;;chr5:158526459..158526481,-!p2@EBF1!0.94!10.31!EBF1;;chr12:125003087..125003141,-!p4@NCOR2!0.94!9.98!NCOR2;;chr13:72441074..72441172,-!p2@DACH1!0.94!7.65!DACH1;;chr3:114866084..114866118,-!p2@ZBTB20!0.93!28.28!ZBTB20;;chr2:239756671..239756732,+!p1@TWIST2!0.93!24.95!TWIST2;;chr1:61924375..61924380,+!p6@NFIA!0.93!10.65!NFIA;;chrX:107018969..107019024,-!p6@TSC22D3!0.93!10.65!TSC22D3;;chr19:13134772..13134822,+!p2@NFIX!0.92!10.98!NFIX;;chr2:45236540..45236577,-!p1@SIX2!0.92!7.32!SIX2;;chr3:114819101..114819121,-!p7@ZBTB20!0.92!7.32!ZBTB20;;chr12:81110684..81110700,+!p1@MYF5!0.92!7.32!MYF5;;chr1:170632477..170632506,+!p6@PRRX1!0.92!7.32!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.92!7.32!PRRX1;;chr17:70117153..70117174,+!p1@SOX9!0.91!77.51!SOX9;;chr2:66662249..66662267,+!p2@MEIS1!0.91!28.61!MEIS1;;chr3:21792585..21792625,-!p2@ZNF385D!0.91!7.98!ZNF385D;;chr17:7492684..7492778,-!p2@SOX15!0.90!14.97!SOX15;;chr6:91006575..91006602,-!p2@BACH2!0.90!10.65!BACH2;;chr5:71803177..71803255,-!p1@ZNF366!0.90!6.99!ZNF366;;chr7:15726243..15726293,-!p2@MEOX2!0.90!6.99!MEOX2;;chr7:27142290..27142310,-!p1@HOXA2!0.90!6.99!HOXA2;;chr6:10412600..10412637,-!p1@TFAP2A!0.89!11.64!TFAP2A;;chr8:80679993..80680011,-!p1@HEY1!0.89!9.98!HEY1;;chr8:48650715..48650735,-!p1@CEBPD!0.88!889.53!CEBPD;;chr7:44143925..44143970,+!p1@AEBP1!0.88!156.02!AEBP1;;chr3:12330560..12330579,+!p1@PPARG!0.88!7.65!PPARG;;chr2:66662396..66662407,+!p4@MEIS1!0.88!6.65!MEIS1;;chr5:3595977..3595999,+!p1@IRX1!0.88!6.65!IRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.88!6.65!PRRX1;;chrY:2803415..2803468,+!p1@ZFY!0.88!6.65!ZFY;;chr7:44143997..44144008,+!p3@AEBP1!0.87!8.32!AEBP1;;chr1:61547405..61547434,+!p11@NFIA!0.86!6.32!NFIA;;chr2:145277640..145277771,-!p1@ZEB2!0.85!87.49!ZEB2;;chr1:164528410..164528428,+!p1@PBX1!0.84!47.24!PBX1;;chr10:70320074..70320106,+!p1@TET1!0.84!12.31!TET1;;chr11:113930291..113930339,+!p2@ZBTB16!0.84!9.98!ZBTB16;;chrX:84498989..84499003,+!p1@ZNF711!0.84!8.32!ZNF711;;chr14:29235961..29236008,+!p1@FOXG1!0.84!5.99!FOXG1;;chr9:14314566..14314618,-!p1@NFIB!0.83!74.85!NFIB;;chr5:88178983..88179012,-!p1@MEF2C!0.83!47.24!MEF2C;;chr4:38665883..38665922,+!p3@KLF3!0.83!22.95!KLF3;;chr2:46524897..46524911,+!p2@EPAS1!0.83!16.97!EPAS1;;chr15:61521417..61521460,-!p2@RORA!0.83!13.64!RORA;;chr2:66662895..66662907,+!p3@MEIS1!0.83!7.32!MEIS1;;chr8:106330696..106330719,+!p2@ZFPM2!0.82!7.32!ZFPM2;;chr9:16870659..16870675,-!p2@BNC2!0.82!6.99!BNC2;;chrY:21906761..21906810,-!p2@KDM5D!0.82!5.66!KDM5D;;chr5:3595934..3595957,+!p2@IRX1!0.82!5.66!IRX1;;chr9:100615499..100615519,+!p1@FOXE1!0.82!5.66!FOXE1;;chr1:10856639..10856662,-!p2@CASZ1!0.82!5.66!CASZ1;;chr1:170632439..170632465,+!p11@PRRX1!0.82!5.66!PRRX1;;chr3:71632864..71632885,-!p4@FOXP1!0.81!19.96!FOXP1;;chr16:54320675..54320715,-!p1@IRX3!0.81!12.31!IRX3;;chr2:166326200..166326216,+!p1@CSRNP3!0.81!8.32!CSRNP3;;chr9:14083467..14083483,-!p4@NFIB!0.80!13.97!NFIB;;chr3:71355163..71355209,-!p5@FOXP1!0.80!7.65!FOXP1;;chr19:57183114..57183145,-!p1@ZNF835!0.80!5.99!ZNF835;;chr1:216978721..216978728,-!p13@ESRRG!0.80!5.32!ESRRG;;chr20:51589133..51589159,+!p2@TSHZ2!0.80!5.32!TSHZ2;;chr22:41763452..41763466,+!p2@TEF!0.80!5.32!TEF;;chr3:25470156..25470227,+!p2@RARB!0.80!5.32!RARB;;chr6:152011654..152011682,+!p1@ESR1!0.80!5.32!ESR1;;chrX:106960285..106960299,-!p1@TSC22D3!0.79!152.03!T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 +
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003126;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008947
 +
|ffid_belonging_in_development=UBERON:0008947,UBERON:0002532,UBERON:0006595,UBERON:0010316
 
|fonse_cell_line=
 
|fonse_cell_line=
 
|fonse_cell_line_closure=
 
|fonse_cell_line_closure=
Line 34: Line 42:
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
 
|has_quality=
 
|has_quality=
 +
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/trachea%252c%2520fetal%252c%2520donor1.CNhs11766.10058-101H4.hg19.nobarcode.bam
 +
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/trachea%252c%2520fetal%252c%2520donor1.CNhs11766.10058-101H4.hg19.ctss.bed.gz
 +
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/trachea%252c%2520fetal%252c%2520donor1.CNhs11766.10058-101H4.hg19.nobarcode.rdna.fa.gz
 +
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/trachea%252c%2520fetal%252c%2520donor1.CNhs11766.10058-101H4.hg38.nobarcode.bam
 +
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/trachea%252c%2520fetal%252c%2520donor1.CNhs11766.10058-101H4.hg38.nobarcode.ctss.bed.gz
 
|id=FF:10058-101H4
 
|id=FF:10058-101H4
|is_a=EFO:0002091;;FF:0000004;;FF:0000210;;FF:0010058
+
|is_a=EFO:0002091;;FF:0010058
 +
|is_obsolete=
 +
|library_id=CNhs11766
 +
|library_id_phase_based=2:CNhs11766
 +
|microRNAs=
 +
|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10058
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10058
 
|name=trachea, fetal, donor1
 
|name=trachea, fetal, donor1
 
|namespace=FANTOM5
 
|namespace=FANTOM5
Line 41: Line 61:
 
|profile_cagescan=,,,
 
|profile_cagescan=,,,
 
|profile_hcage=CNhs11766,LSID820,release009,COMPLETED
 
|profile_hcage=CNhs11766,LSID820,release009,COMPLETED
|profile_rnaseq=,,,
+
|profile_rnaseq=
 
|profile_srnaseq=,,,
 
|profile_srnaseq=,,,
 +
|refex=http://refex.dbcls.jp/genelist.php?lang
 +
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 +
|repeat_enrich_byname=0.0864646317662264,0.60140188521406,0,0,0.202556017842103,0.22149788379633,0,0.425420379788049,0.124719478691449,0,0.425420379788049,0,0.124719478691449,0.22149788379633,0,0,0.229357445488402,0,0.162060885085367,-0.0187956638320227,0.0623597393457245,0,0.111811863590444,0,0.30059136907981,0,0,0.124719478691449,0,0.124719478691449,0,0.124719478691449,0.394144676994188,0,0.97682083484382,0.22149788379633,0,0,0,0.0927027467587434,0.119948148889642,0,-0.0635091192513445,0.453920282869384,0,0,0,0.0829712642445124,-0.0575852454486947,0,0.10061840000259,0.0419993103680318,0.708426253670514,0.39322200386672,0.0832232634633147,0,0,0,0.147400549000122,0.316576040055301,0,0,0.274738543378657,0.303183039424819,0,0,1.47927314951513,0.124719478691449,0.243941006916903,0.183244274954262,0,0.126359864118964,0,0,0,0,0,0,0,0,0,0.0623597393457245,0,0.635910565095435,0.496174215272974,0,0.124719478691449,0.30059136907981,0.124719478691449,0.161371829593627,0,0.0894709223983549,0.262860947880808,0.0746843664911903,0.115063955076974,0.166078822790539,0.0546320560757421,0.45021525961724,0.252319577573666,0.271235078540808,0.0419731658962782,0.27801853041691,0.177493742040899,0.0427958631039881,0.181491935254452,0.227175129329953,0.109173248253868,-0.0108078971287147,0.0503959340415163,0.451978719832043,0.0255322009640808,0,0,0.22149788379633,0.137178312267315,0.105790174404564,0,0.26249027215038,0.0669289328566841,0.288455023743825,0.223316719853643,0.054897240804763,0.172769547448868,0.829452027125852,0.365726359055348,0.168318329297206,0.895172401519964,0.158269667842761,0.30059136907981,0.124719478691449,0.0952678163134475,0.292464651494328,0.0203209306586961,0,0.4694849604976,-0.0683442610773682,0.17310868124389,0.040037160837461,0.159832855784696,0.124719478691449,0.0126623659056853,-0.0151439492781921,0,0.124719478691449,0,0.124719478691449,0.425420379788049,-0.113347368789415,0.128825168539447,-0.232855561555545,0,0.0191801078046657,0,0.03687257543222,0.0706994713865077,-0.0665247136270916,0.0193271221855247,0.147796038665155,0.0558252229730567,0.080577318831395,-0.058031448493257,0.187181598542895,0.135600672740807,0.0998697385550151,0.066272651879624,0.0704214174959267,0.276109273313707,0.00285961960439707,0.366590931692446,0.155892501762236,1.1241240837487,0.124719478691449,0.0535310093750069,0.455351055645446,0.0855680142597564,0.141906583585414,0.170821859189739,0.256898107377881,0.56363328159322,0.315754668947386,0.0530496467989987,0.00387733682413749,0.303912085806267,0.662564627063816,-0.178124481217274,0.0711469019651143,0.0924860818013309,0.83769458530378,0.195370135338261,0.124719478691449,0.0681752303392277,0.668317311569613,0.371897460612113,0.342898885967054,0.486617561138229,0.0737207332148299,0,0.179173045426769,0.124719478691449,0,0.104173308568925,0.131999423826358,0,0.0457264678489624,-0.13266659343943,0.0319310626420807,0.0087484052565151,0.124719478691449,0,0.323552865823701,0,0.636147103837375,0.484345939619308,0.248929814800533,0.433774156955584,0.0472650275930541,0.177942651193023,0.71238221064318,0.112319928294827,0.22149788379633,0.0439701178311545,0.367475461590747,-0.024986869785747,0,0,0.175621310049172,0,0,0.183737730795374,0.367475461590747,0,0.124719478691449,0.0262366658128341,0,0,0.0542735929612755,0,0.161150063683446,0.681950618098572,0.0126421313742988,0.124719478691449,-0.222098763850568,0,0,0,0.56363328159322,0,0.124719478691449,0.0491113800630018,0,0.0632284983122713,0.214308513916983,0.00170206301502888,0,0,0,0.0912872656171513,0.151752059037272,-0.0785170834032746,0.22149788379633,0.168728662582178,0.124719478691449,0.0623597393457245,0,0,0.135356894007119,0,0,0.0623597393457245,0.0623597393457245,-0.057730457053664,-0.0212725097428892,0,0,0.110748941898165,1.11431398360581,0,0,0,0.200655723427659,0.101266516091076,0,0,-0.109665629439627,0,-0.00664663212492345,0.0431375991446077,0,0.0939954737855491,-0.362722494814834,0.0932289798617849,0,0,0.603196388097102,0,0,0.109368768901383,0,0.367475461590747,0.077359306280649,0,0,0,0,0,0,0.262221808374211,0,0,0.124719478691449,0,0,0,0,0,0,0,0,0.0760769355641366,-0.0922240566585104,0,0,0,0,0.522264543946753,0,0.124719478691449,0.250963906160846,0.0583220360959703,0,0,0.0647257013231708,0,0,0.22149788379633,0,0.0546410930690755,0.497827264153183,0,0,0,0.0639119404435609,0,0.53915474259477,0,0,0,0,1.27526993417248,0,0,0.199174188580452,0,0,0,0,0,0,0.0288523837982427,0.105319200283964,0,0,0,0,0,-0.123319086035448,-0.149782797549637,0,0,0,0,0,0.30059136907981,0,0.526060053065567,0,0.668317311569613,0,0,0.107613510087353,0,0,0,0.320623994998892,0,-0.160318030086386,1.05355748091422,0,0,0,0,0,0,0,0,0,0,0,0,0.124719478691449,0,0,0,0,0,0,0.088725805484668,0.124945352865381,0.131232380260391,0.56363328159322,0.182254494650518,0,0,0.130514514669229,0,0,0,0,0,0,0.118955260511378,0.0615818978333948,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124719478691449,0,0,0,0,0,0,0.148879686990285,0,0,0,0,0,0,0,0.746387941011449,0,0,0.032686668890923,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|rna_box=101
 
|rna_box=101
 
|rna_catalog_number=Cat:RtHFN: Trachea
 
|rna_catalog_number=Cat:RtHFN: Trachea
Line 56: Line 79:
 
|rna_weight_ug=10
 
|rna_weight_ug=10
 
|sample_age=
 
|sample_age=
 +
|sample_category=tissues
 
|sample_cell_catalog=NA
 
|sample_cell_catalog=NA
 
|sample_cell_line=
 
|sample_cell_line=
Line 68: Line 92:
 
|sample_ethnicity=A?
 
|sample_ethnicity=A?
 
|sample_experimental_condition=
 
|sample_experimental_condition=
 +
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.01624723413076e-218!GO:0005737;cytoplasm;3.72100969155438e-194!GO:0043226;organelle;7.54991970624329e-137!GO:0043229;intracellular organelle;1.83379067292755e-136!GO:0044444;cytoplasmic part;1.09586685214962e-123!GO:0043231;intracellular membrane-bound organelle;1.61184441076205e-111!GO:0043227;membrane-bound organelle;1.7764501014107e-111!GO:0005515;protein binding;1.87061564359176e-104!GO:0044422;organelle part;1.20558078832886e-100!GO:0044446;intracellular organelle part;4.26348669699825e-99!GO:0032991;macromolecular complex;5.54891194228848e-71!GO:0030529;ribonucleoprotein complex;1.57646069923806e-51!GO:0016043;cellular component organization and biogenesis;8.24126805399855e-47!GO:0043233;organelle lumen;5.18951546228778e-45!GO:0031974;membrane-enclosed lumen;5.18951546228778e-45!GO:0044238;primary metabolic process;6.75685791546457e-43!GO:0005739;mitochondrion;2.39273644635705e-42!GO:0043170;macromolecule metabolic process;3.00152895888035e-42!GO:0003723;RNA binding;8.98646453725096e-42!GO:0044237;cellular metabolic process;3.04819001354796e-41!GO:0019538;protein metabolic process;4.90203875552071e-40!GO:0031090;organelle membrane;6.00821999959463e-40!GO:0043234;protein complex;3.63601306747619e-39!GO:0044428;nuclear part;5.86721302276935e-38!GO:0044260;cellular macromolecule metabolic process;2.65582893622403e-34!GO:0005840;ribosome;2.3929182429213e-33!GO:0044267;cellular protein metabolic process;6.47830285807844e-33!GO:0043228;non-membrane-bound organelle;3.29258623073911e-32!GO:0043232;intracellular non-membrane-bound organelle;3.29258623073911e-32!GO:0044429;mitochondrial part;5.51984063112483e-32!GO:0033036;macromolecule localization;6.79649896413316e-32!GO:0005634;nucleus;7.65064769623336e-31!GO:0015031;protein transport;1.88361480240195e-30!GO:0031967;organelle envelope;2.47534159077731e-30!GO:0031975;envelope;4.1049807222826e-30!GO:0008104;protein localization;1.26173406049825e-29!GO:0003735;structural constituent of ribosome;1.86553639181963e-29!GO:0045184;establishment of protein localization;3.1269387348103e-29!GO:0005829;cytosol;3.84357460232462e-29!GO:0006412;translation;5.99663790764246e-29!GO:0046907;intracellular transport;1.78653403123004e-27!GO:0033279;ribosomal subunit;3.82411091803797e-26!GO:0016071;mRNA metabolic process;5.03209904871423e-26!GO:0009059;macromolecule biosynthetic process;1.7959254501134e-25!GO:0065003;macromolecular complex assembly;2.23967045687182e-25!GO:0022607;cellular component assembly;2.58122974164796e-25!GO:0008380;RNA splicing;9.17031965359263e-25!GO:0006396;RNA processing;9.062842114219e-24!GO:0031981;nuclear lumen;4.21274359485604e-23!GO:0008092;cytoskeletal protein binding;1.29539446295412e-22!GO:0006886;intracellular protein transport;1.96057298171362e-22!GO:0019866;organelle inner membrane;5.03527014128846e-22!GO:0005740;mitochondrial envelope;6.80949265585392e-22!GO:0031966;mitochondrial membrane;1.00320533523111e-21!GO:0009058;biosynthetic process;1.13605220445651e-21!GO:0006397;mRNA processing;1.40162983029305e-21!GO:0006996;organelle organization and biogenesis;1.31633629834834e-20!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.58399143118431e-20!GO:0005743;mitochondrial inner membrane;1.5916417920039e-20!GO:0006119;oxidative phosphorylation;2.99429800275287e-19!GO:0044249;cellular biosynthetic process;3.47686290456673e-19!GO:0005783;endoplasmic reticulum;7.41771866511018e-19!GO:0005794;Golgi apparatus;1.07915650796938e-18!GO:0044445;cytosolic part;1.83647084633993e-18!GO:0043283;biopolymer metabolic process;4.71799939690361e-18!GO:0012505;endomembrane system;1.25872925672802e-17!GO:0051641;cellular localization;1.45566440033769e-17!GO:0051649;establishment of cellular localization;1.94158758816872e-17!GO:0048770;pigment granule;1.98239625019975e-17!GO:0042470;melanosome;1.98239625019975e-17!GO:0005681;spliceosome;6.86211897548967e-17!GO:0010467;gene expression;1.03758227639137e-16!GO:0005746;mitochondrial respiratory chain;1.30328394570024e-16!GO:0044455;mitochondrial membrane part;1.59718577666132e-16!GO:0015629;actin cytoskeleton;6.17064334150393e-16!GO:0008134;transcription factor binding;1.31069106105017e-15!GO:0005654;nucleoplasm;2.81688796750613e-15!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.33290938565503e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.16181644713272e-14!GO:0003954;NADH dehydrogenase activity;1.16181644713272e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.16181644713272e-14!GO:0003779;actin binding;1.76631095016193e-14!GO:0016192;vesicle-mediated transport;2.40946411254123e-14!GO:0044449;contractile fiber part;2.90684941983444e-14!GO:0015935;small ribosomal subunit;5.32677052691021e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.32499095528788e-14!GO:0031980;mitochondrial lumen;1.35467573631848e-13!GO:0005759;mitochondrial matrix;1.35467573631848e-13!GO:0043292;contractile fiber;1.6789030689374e-13!GO:0048193;Golgi vesicle transport;3.34849065204362e-13!GO:0015934;large ribosomal subunit;3.58784709811879e-13!GO:0048523;negative regulation of cellular process;3.85473962501259e-13!GO:0022618;protein-RNA complex assembly;4.08525962531818e-13!GO:0000166;nucleotide binding;4.5454968205173e-13!GO:0006457;protein folding;5.72907997983679e-13!GO:0044451;nucleoplasm part;1.06794688659123e-12!GO:0044432;endoplasmic reticulum part;1.32600335334751e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.49435631632772e-12!GO:0045271;respiratory chain complex I;1.49435631632772e-12!GO:0005747;mitochondrial respiratory chain complex I;1.49435631632772e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;1.83050952587347e-12!GO:0044265;cellular macromolecule catabolic process;1.83050952587347e-12!GO:0006511;ubiquitin-dependent protein catabolic process;2.47185223641929e-12!GO:0019941;modification-dependent protein catabolic process;3.15295654907045e-12!GO:0043632;modification-dependent macromolecule catabolic process;3.15295654907045e-12!GO:0042775;organelle ATP synthesis coupled electron transport;3.19137726497847e-12!GO:0042773;ATP synthesis coupled electron transport;3.19137726497847e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.64226429650135e-12!GO:0044257;cellular protein catabolic process;4.90272240499247e-12!GO:0030016;myofibril;6.58470450000044e-12!GO:0008135;translation factor activity, nucleic acid binding;7.93532873768204e-12!GO:0030029;actin filament-based process;9.05280304528851e-12!GO:0016462;pyrophosphatase activity;1.18470923605973e-11!GO:0048519;negative regulation of biological process;1.40131707342408e-11!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.43380820272049e-11!GO:0030036;actin cytoskeleton organization and biogenesis;1.57175209763862e-11!GO:0006605;protein targeting;2.14259260050772e-11!GO:0016817;hydrolase activity, acting on acid anhydrides;2.26608251129836e-11!GO:0017111;nucleoside-triphosphatase activity;2.97951727088922e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.25259385519598e-11!GO:0008307;structural constituent of muscle;3.68857661142265e-11!GO:0030163;protein catabolic process;6.18214363347108e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.88898664825408e-11!GO:0006512;ubiquitin cycle;1.03124506317778e-10!GO:0043285;biopolymer catabolic process;1.18617650926769e-10!GO:0006461;protein complex assembly;1.41962923162484e-10!GO:0005793;ER-Golgi intermediate compartment;1.43741690351346e-10!GO:0030017;sarcomere;1.47226305854332e-10!GO:0043412;biopolymer modification;2.18353024441943e-10!GO:0044420;extracellular matrix part;4.13572943880752e-10!GO:0000502;proteasome complex (sensu Eukaryota);5.07444987949119e-10!GO:0006366;transcription from RNA polymerase II promoter;5.14753310721466e-10!GO:0009057;macromolecule catabolic process;5.87462139856102e-10!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.06944036702443e-10!GO:0006464;protein modification process;6.17310231862952e-10!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.62990619891824e-10!GO:0031982;vesicle;6.62990619891824e-10!GO:0031988;membrane-bound vesicle;8.48183870798954e-10!GO:0003712;transcription cofactor activity;1.2827387493338e-09!GO:0031410;cytoplasmic vesicle;1.32991787271713e-09!GO:0008565;protein transporter activity;1.35674066715845e-09!GO:0016023;cytoplasmic membrane-bound vesicle;1.38600277959933e-09!GO:0005788;endoplasmic reticulum lumen;1.47174041967712e-09!GO:0005856;cytoskeleton;1.58075848002902e-09!GO:0005635;nuclear envelope;2.06322723818072e-09!GO:0031965;nuclear membrane;3.1326541562459e-09!GO:0007010;cytoskeleton organization and biogenesis;3.63060688464808e-09!GO:0006913;nucleocytoplasmic transport;4.05740075548944e-09!GO:0032553;ribonucleotide binding;4.07303202162132e-09!GO:0032555;purine ribonucleotide binding;4.07303202162132e-09!GO:0051082;unfolded protein binding;6.41321159931107e-09!GO:0005581;collagen;6.48691949683696e-09!GO:0051186;cofactor metabolic process;7.17410125315335e-09!GO:0003743;translation initiation factor activity;7.17410125315335e-09!GO:0016874;ligase activity;7.2059705865478e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;8.34033223475458e-09!GO:0000375;RNA splicing, via transesterification reactions;8.34033223475458e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.34033223475458e-09!GO:0017076;purine nucleotide binding;8.3884330623951e-09!GO:0051169;nuclear transport;9.44255713585275e-09!GO:0016564;transcription repressor activity;1.04250905116128e-08!GO:0044248;cellular catabolic process;1.05393664782491e-08!GO:0005761;mitochondrial ribosome;1.25700529159462e-08!GO:0000313;organellar ribosome;1.25700529159462e-08!GO:0006446;regulation of translational initiation;1.29742182874494e-08!GO:0044431;Golgi apparatus part;1.32844794550541e-08!GO:0006413;translational initiation;1.57934875617048e-08!GO:0045333;cellular respiration;1.65513702505026e-08!GO:0043687;post-translational protein modification;3.01986374520555e-08!GO:0016604;nuclear body;3.33323779076106e-08!GO:0009055;electron carrier activity;4.04130168593326e-08!GO:0019829;cation-transporting ATPase activity;4.20569161936355e-08!GO:0012501;programmed cell death;5.40265614948166e-08!GO:0009060;aerobic respiration;5.47209079363989e-08!GO:0007517;muscle development;6.03513084288265e-08!GO:0006915;apoptosis;7.0751709999016e-08!GO:0005730;nucleolus;7.20077636649859e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;9.56029209685362e-08!GO:0031252;leading edge;1.28388980041532e-07!GO:0050789;regulation of biological process;1.49399549224628e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.51705377030826e-07!GO:0030120;vesicle coat;1.85240583777548e-07!GO:0030662;coated vesicle membrane;1.85240583777548e-07!GO:0016607;nuclear speck;2.29988719633676e-07!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.6751008116027e-07!GO:0017038;protein import;3.12451910144612e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.57439676860904e-07!GO:0008639;small protein conjugating enzyme activity;3.76582570558478e-07!GO:0005789;endoplasmic reticulum membrane;4.30271320310811e-07!GO:0008219;cell death;4.57247574006229e-07!GO:0016265;death;4.57247574006229e-07!GO:0004842;ubiquitin-protein ligase activity;4.69533227357822e-07!GO:0006099;tricarboxylic acid cycle;6.37934454850365e-07!GO:0046356;acetyl-CoA catabolic process;6.37934454850365e-07!GO:0045786;negative regulation of progression through cell cycle;7.23897624222921e-07!GO:0016887;ATPase activity;7.72449659521698e-07!GO:0050794;regulation of cellular process;9.14156323766516e-07!GO:0000139;Golgi membrane;9.50410261408303e-07!GO:0006732;coenzyme metabolic process;1.19986547360018e-06!GO:0005578;proteinaceous extracellular matrix;1.22072856164968e-06!GO:0005524;ATP binding;1.24669321795312e-06!GO:0032559;adenyl ribonucleotide binding;1.26676410464829e-06!GO:0006793;phosphorus metabolic process;1.29246943687271e-06!GO:0006796;phosphate metabolic process;1.29246943687271e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.31859923609891e-06!GO:0048475;coated membrane;1.48127828722939e-06!GO:0030117;membrane coat;1.48127828722939e-06!GO:0015980;energy derivation by oxidation of organic compounds;1.55762155799277e-06!GO:0005583;fibrillar collagen;1.6166065908088e-06!GO:0008361;regulation of cell size;1.84212843851404e-06!GO:0015986;ATP synthesis coupled proton transport;2.07401936571814e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.07401936571814e-06!GO:0016481;negative regulation of transcription;2.1237951903365e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.18506319185068e-06!GO:0016049;cell growth;2.29238280657655e-06!GO:0009109;coenzyme catabolic process;2.29238280657655e-06!GO:0006084;acetyl-CoA metabolic process;2.47970209081077e-06!GO:0030554;adenyl nucleotide binding;2.88892675523366e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.22438349712097e-06!GO:0045259;proton-transporting ATP synthase complex;3.77971382506907e-06!GO:0019787;small conjugating protein ligase activity;4.04731122676087e-06!GO:0031324;negative regulation of cellular metabolic process;4.1380359413086e-06!GO:0006606;protein import into nucleus;4.9109067108242e-06!GO:0007049;cell cycle;5.25684752603252e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.15567400496242e-06!GO:0044453;nuclear membrane part;6.34951459095543e-06!GO:0051187;cofactor catabolic process;6.70713859770959e-06!GO:0005798;Golgi-associated vesicle;7.03071497835042e-06!GO:0009892;negative regulation of metabolic process;7.71210737983936e-06!GO:0051246;regulation of protein metabolic process;7.87406556364466e-06!GO:0051170;nuclear import;8.73284743583882e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.61338225051038e-06!GO:0009144;purine nucleoside triphosphate metabolic process;9.61338225051038e-06!GO:0009141;nucleoside triphosphate metabolic process;1.03413037320328e-05!GO:0003714;transcription corepressor activity;1.04660685538631e-05!GO:0006259;DNA metabolic process;1.17569359821355e-05!GO:0016310;phosphorylation;1.25313519967245e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.26468597711525e-05!GO:0009199;ribonucleoside triphosphate metabolic process;1.38785924883264e-05!GO:0006163;purine nucleotide metabolic process;1.41036021973885e-05!GO:0016070;RNA metabolic process;1.42097861983225e-05!GO:0046034;ATP metabolic process;1.43819420165986e-05!GO:0042623;ATPase activity, coupled;1.55604450026201e-05!GO:0016044;membrane organization and biogenesis;1.67516676015053e-05!GO:0051789;response to protein stimulus;1.85283670251666e-05!GO:0006986;response to unfolded protein;1.85283670251666e-05!GO:0051128;regulation of cellular component organization and biogenesis;1.88186873260183e-05!GO:0009150;purine ribonucleotide metabolic process;1.91058320582935e-05!GO:0005768;endosome;1.97164645269568e-05!GO:0022890;inorganic cation transmembrane transporter activity;2.04405419463839e-05!GO:0005865;striated muscle thin filament;2.18897866262865e-05!GO:0042802;identical protein binding;2.37274123411833e-05!GO:0003676;nucleic acid binding;2.518062665294e-05!GO:0009056;catabolic process;3.00700981749159e-05!GO:0000074;regulation of progression through cell cycle;3.01483826522204e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;3.02202242243081e-05!GO:0019899;enzyme binding;3.34367768230544e-05!GO:0030532;small nuclear ribonucleoprotein complex;3.40534514046714e-05!GO:0051726;regulation of cell cycle;3.59672451714499e-05!GO:0001558;regulation of cell growth;3.95652545038504e-05!GO:0005201;extracellular matrix structural constituent;4.2181450752616e-05!GO:0030133;transport vesicle;4.25580269946419e-05!GO:0009259;ribonucleotide metabolic process;4.35120488054068e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.41309864588033e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.41309864588033e-05!GO:0065007;biological regulation;5.11474849138762e-05!GO:0006916;anti-apoptosis;5.36334924023197e-05!GO:0043066;negative regulation of apoptosis;5.64479607397002e-05!GO:0043069;negative regulation of programmed cell death;5.72951978905861e-05!GO:0006754;ATP biosynthetic process;5.98693248360459e-05!GO:0006753;nucleoside phosphate metabolic process;5.98693248360459e-05!GO:0003924;GTPase activity;6.04273897638196e-05!GO:0009142;nucleoside triphosphate biosynthetic process;6.43540031085723e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.43540031085723e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;6.66487252089187e-05!GO:0006613;cotranslational protein targeting to membrane;7.05445556156871e-05!GO:0000151;ubiquitin ligase complex;7.25145739821086e-05!GO:0007264;small GTPase mediated signal transduction;7.49624129870486e-05!GO:0016881;acid-amino acid ligase activity;7.62840197549936e-05!GO:0048471;perinuclear region of cytoplasm;7.79044687390344e-05!GO:0005643;nuclear pore;8.88836511225798e-05!GO:0006941;striated muscle contraction;9.83161229988205e-05!GO:0045893;positive regulation of transcription, DNA-dependent;0.000101865469376611!GO:0003713;transcription coactivator activity;0.000110588432271079!GO:0006091;generation of precursor metabolites and energy;0.000112255960213196!GO:0000245;spliceosome assembly;0.000118538755816592!GO:0006164;purine nucleotide biosynthetic process;0.000127465308259008!GO:0016879;ligase activity, forming carbon-nitrogen bonds;0.000152189419380651!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000167320176705803!GO:0009152;purine ribonucleotide biosynthetic process;0.000178045981035912!GO:0005525;GTP binding;0.000179181211429264!GO:0031589;cell-substrate adhesion;0.000183813164887069!GO:0006323;DNA packaging;0.000187010704479573!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000191480410685763!GO:0045892;negative regulation of transcription, DNA-dependent;0.000196486234474941!GO:0042981;regulation of apoptosis;0.000218914625105542!GO:0016563;transcription activator activity;0.000227705236974193!GO:0001666;response to hypoxia;0.000236596308363709!GO:0005791;rough endoplasmic reticulum;0.000238218737973571!GO:0030027;lamellipodium;0.000242099916873538!GO:0030934;anchoring collagen;0.000250582837481538!GO:0005667;transcription factor complex;0.000254188812138575!GO:0045941;positive regulation of transcription;0.000260477228395994!GO:0032446;protein modification by small protein conjugation;0.000260477228395994!GO:0005839;proteasome core complex (sensu Eukaryota);0.000264632963909587!GO:0050657;nucleic acid transport;0.000313649863188832!GO:0051236;establishment of RNA localization;0.000313649863188832!GO:0050658;RNA transport;0.000313649863188832!GO:0005912;adherens junction;0.000341810815703693!GO:0007160;cell-matrix adhesion;0.000346795351069302!GO:0051427;hormone receptor binding;0.000352484192911091!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00035505171980388!GO:0016859;cis-trans isomerase activity;0.000356251216512888!GO:0007005;mitochondrion organization and biogenesis;0.000366453959398645!GO:0004576;oligosaccharyl transferase activity;0.000367842224437116!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000373963637039472!GO:0065002;intracellular protein transport across a membrane;0.000382027922229517!GO:0031674;I band;0.000382968735613021!GO:0043067;regulation of programmed cell death;0.000397804684695659!GO:0016567;protein ubiquitination;0.00039998577756558!GO:0006403;RNA localization;0.000407817766628067!GO:0007167;enzyme linked receptor protein signaling pathway;0.000410474643049528!GO:0005773;vacuole;0.00041138557061167!GO:0001726;ruffle;0.000435397493032941!GO:0033116;ER-Golgi intermediate compartment membrane;0.000451596011103411!GO:0006897;endocytosis;0.000480778087400026!GO:0010324;membrane invagination;0.000480778087400026!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000486036328556422!GO:0030867;rough endoplasmic reticulum membrane;0.000527726672855937!GO:0009260;ribonucleotide biosynthetic process;0.000527726672855937!GO:0065004;protein-DNA complex assembly;0.000537667188095409!GO:0008250;oligosaccharyl transferase complex;0.000541628254679005!GO:0019843;rRNA binding;0.000545350105466928!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000575245888334144!GO:0035257;nuclear hormone receptor binding;0.000614710251285335!GO:0040008;regulation of growth;0.000619357909279731!GO:0043566;structure-specific DNA binding;0.000645749605121838!GO:0030198;extracellular matrix organization and biogenesis;0.000669286451802245!GO:0005905;coated pit;0.000669286451802245!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000698094899855992!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000712353264730758!GO:0005762;mitochondrial large ribosomal subunit;0.000742605020203637!GO:0000315;organellar large ribosomal subunit;0.000742605020203637!GO:0022402;cell cycle process;0.000748470736881449!GO:0005769;early endosome;0.000753304994414836!GO:0031032;actomyosin structure organization and biogenesis;0.000757747839813439!GO:0008286;insulin receptor signaling pathway;0.000777129955900595!GO:0030031;cell projection biogenesis;0.000800715928543548!GO:0000902;cell morphogenesis;0.000811204749438397!GO:0032989;cellular structure morphogenesis;0.000811204749438397!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.000817283776942049!GO:0033043;regulation of organelle organization and biogenesis;0.000817283776942049!GO:0006333;chromatin assembly or disassembly;0.000830491075659008!GO:0048522;positive regulation of cellular process;0.00085395304931258!GO:0006818;hydrogen transport;0.00087375147672326!GO:0042254;ribosome biogenesis and assembly;0.000906542106280284!GO:0015992;proton transport;0.000916560599714785!GO:0003697;single-stranded DNA binding;0.000930971612850856!GO:0005593;FACIT collagen;0.000938591790042159!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000940725836144092!GO:0016529;sarcoplasmic reticulum;0.000944064942461984!GO:0016528;sarcoplasm;0.000944064942461984!GO:0006414;translational elongation;0.000944064942461984!GO:0044262;cellular carbohydrate metabolic process;0.000944064942461984!GO:0051188;cofactor biosynthetic process;0.000972515911352943!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000986909522023487!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000986909522023487!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000986909522023487!GO:0004298;threonine endopeptidase activity;0.00101040860608631!GO:0003012;muscle system process;0.00101040860608631!GO:0006936;muscle contraction;0.00101040860608631!GO:0032561;guanyl ribonucleotide binding;0.00102137128975997!GO:0019001;guanyl nucleotide binding;0.00102137128975997!GO:0046930;pore complex;0.00124387804741426!GO:0014706;striated muscle development;0.00133059355466375!GO:0030663;COPI coated vesicle membrane;0.00139706666722527!GO:0030126;COPI vesicle coat;0.00139706666722527!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00155193035186702!GO:0004812;aminoacyl-tRNA ligase activity;0.00155193035186702!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00155193035186702!GO:0001725;stress fiber;0.00160690162261717!GO:0032432;actin filament bundle;0.00160690162261717!GO:0051920;peroxiredoxin activity;0.00160690162261717!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00160690162261717!GO:0000323;lytic vacuole;0.00167183677381979!GO:0005764;lysosome;0.00167183677381979!GO:0009966;regulation of signal transduction;0.00171272438691871!GO:0008154;actin polymerization and/or depolymerization;0.00171944748344634!GO:0005048;signal sequence binding;0.00175815801756056!GO:0007169;transmembrane receptor protein tyrosine kinase signaling pathway;0.00177204831387928!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00186247404802479!GO:0016197;endosome transport;0.00202232817804669!GO:0006891;intra-Golgi vesicle-mediated transport;0.0020690330121782!GO:0015630;microtubule cytoskeleton;0.00209338728738703!GO:0051276;chromosome organization and biogenesis;0.00209543022327039!GO:0007265;Ras protein signal transduction;0.00215421123999387!GO:0004386;helicase activity;0.00217897916024585!GO:0043623;cellular protein complex assembly;0.00229368657218356!GO:0005741;mitochondrial outer membrane;0.00229531466121731!GO:0030018;Z disc;0.002304160901229!GO:0043284;biopolymer biosynthetic process;0.002304160901229!GO:0006334;nucleosome assembly;0.002304160901229!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00250006623816219!GO:0051028;mRNA transport;0.00251037172097829!GO:0005859;muscle myosin complex;0.00254489467638978!GO:0030658;transport vesicle membrane;0.00269390092205669!GO:0051287;NAD binding;0.00270662455940138!GO:0005770;late endosome;0.00273852457362141!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.00289296224413658!GO:0030134;ER to Golgi transport vesicle;0.00296176484906163!GO:0043021;ribonucleoprotein binding;0.00299860445424904!GO:0016853;isomerase activity;0.00300034515486815!GO:0030832;regulation of actin filament length;0.00300034515486815!GO:0003724;RNA helicase activity;0.00305162315913391!GO:0005083;small GTPase regulator activity;0.00307760819310674!GO:0000785;chromatin;0.00312221853363578!GO:0005885;Arp2/3 protein complex;0.00315265967455797!GO:0043038;amino acid activation;0.00317325433109504!GO:0006418;tRNA aminoacylation for protein translation;0.00317325433109504!GO:0043039;tRNA aminoacylation;0.00317325433109504!GO:0006752;group transfer coenzyme metabolic process;0.00323440100408339!GO:0003746;translation elongation factor activity;0.00323440100408339!GO:0035258;steroid hormone receptor binding;0.00327327817745244!GO:0019867;outer membrane;0.0032928047019822!GO:0031968;organelle outer membrane;0.00335881199534974!GO:0032535;regulation of cellular component size;0.00338137460490961!GO:0008026;ATP-dependent helicase activity;0.00338137460490961!GO:0030127;COPII vesicle coat;0.00338226259598358!GO:0012507;ER to Golgi transport vesicle membrane;0.00338226259598358!GO:0005523;tropomyosin binding;0.00339302262097887!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00350034054781805!GO:0015002;heme-copper terminal oxidase activity;0.00350034054781805!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00350034054781805!GO:0004129;cytochrome-c oxidase activity;0.00350034054781805!GO:0030137;COPI-coated vesicle;0.00352419143530072!GO:0030199;collagen fibril organization;0.00354993583995335!GO:0044440;endosomal part;0.0035780155543982!GO:0010008;endosome membrane;0.0035780155543982!GO:0006612;protein targeting to membrane;0.00369967665384952!GO:0009117;nucleotide metabolic process;0.00377135442564492!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.004006602206428!GO:0015399;primary active transmembrane transporter activity;0.004006602206428!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00403836473761018!GO:0048518;positive regulation of biological process;0.00448797509392071!GO:0006402;mRNA catabolic process;0.00457924845792487!GO:0051252;regulation of RNA metabolic process;0.00483080619848318!GO:0018196;peptidyl-asparagine modification;0.00484984650550566!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00484984650550566!GO:0005604;basement membrane;0.00484984650550566!GO:0030132;clathrin coat of coated pit;0.00495736712309007!GO:0007243;protein kinase cascade;0.00495736712309007!GO:0008654;phospholipid biosynthetic process;0.00498259452756001!GO:0043488;regulation of mRNA stability;0.00506233248611638!GO:0043487;regulation of RNA stability;0.00506233248611638!GO:0031497;chromatin assembly;0.00529121570532611!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00531773086285569!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00532333505994443!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00532333505994443!GO:0016460;myosin II complex;0.00544439312654653!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00554419811308959!GO:0030041;actin filament polymerization;0.00554419811308959!GO:0030659;cytoplasmic vesicle membrane;0.00558875662591656!GO:0030118;clathrin coat;0.00559265798313594!GO:0012506;vesicle membrane;0.00588327740646984!GO:0016491;oxidoreductase activity;0.00605048709406018!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00605048709406018!GO:0051674;localization of cell;0.00610334218098531!GO:0006928;cell motility;0.00610334218098531!GO:0006979;response to oxidative stress;0.00658948241548865!GO:0006937;regulation of muscle contraction;0.00674804876300696!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0069248095189871!GO:0005586;collagen type III;0.00706006734668698!GO:0007050;cell cycle arrest;0.00747405059961795!GO:0030660;Golgi-associated vesicle membrane;0.00748067940560556!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00751788226147533!GO:0003729;mRNA binding;0.00771654214678577!GO:0008064;regulation of actin polymerization and/or depolymerization;0.00778956325149755!GO:0009108;coenzyme biosynthetic process;0.00783298716023967!GO:0051087;chaperone binding;0.00806081931046086!GO:0016568;chromatin modification;0.00816394059773426!GO:0001944;vasculature development;0.00838858787331426!GO:0005938;cell cortex;0.00869228655153963!GO:0003690;double-stranded DNA binding;0.00891681644297658!GO:0015631;tubulin binding;0.00902961267661594!GO:0000314;organellar small ribosomal subunit;0.0090834074044376!GO:0005763;mitochondrial small ribosomal subunit;0.0090834074044376!GO:0051270;regulation of cell motility;0.00925751872738799!GO:0045454;cell redox homeostasis;0.00925751872738799!GO:0045445;myoblast differentiation;0.00971028485566769!GO:0055001;muscle cell development;0.00997230850148685!GO:0030239;myofibril assembly;0.00997230850148685!GO:0055002;striated muscle cell development;0.00997230850148685!GO:0048500;signal recognition particle;0.00997230850148685!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00997230850148685!GO:0016584;nucleosome positioning;0.0104164246891929!GO:0017166;vinculin binding;0.0105502451182858!GO:0044433;cytoplasmic vesicle part;0.0106347905727599!GO:0051101;regulation of DNA binding;0.0106347905727599!GO:0030518;steroid hormone receptor signaling pathway;0.0107794254598067!GO:0005861;troponin complex;0.0107794254598067!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.011218005314169!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0113084490498344!GO:0001568;blood vessel development;0.0115528386994579!GO:0033673;negative regulation of kinase activity;0.0116721559847652!GO:0006469;negative regulation of protein kinase activity;0.0116721559847652!GO:0043492;ATPase activity, coupled to movement of substances;0.0117338156296746!GO:0008139;nuclear localization sequence binding;0.0118224371260886!GO:0016281;eukaryotic translation initiation factor 4F complex;0.012091630226221!GO:0006892;post-Golgi vesicle-mediated transport;0.012210066852101!GO:0045045;secretory pathway;0.0122111481437309!GO:0006950;response to stress;0.012468875244595!GO:0048468;cell development;0.012468875244595!GO:0003702;RNA polymerase II transcription factor activity;0.0128902790320231!GO:0001527;microfibril;0.0129845108478241!GO:0005913;cell-cell adherens junction;0.0130100893074892!GO:0006942;regulation of striated muscle contraction;0.0130958331914796!GO:0007519;skeletal muscle development;0.0131383156044722!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0135420944476057!GO:0006974;response to DNA damage stimulus;0.013953822846653!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.014402930719366!GO:0040011;locomotion;0.0144899574342253!GO:0051168;nuclear export;0.0147872851992258!GO:0030521;androgen receptor signaling pathway;0.0148378067955765!GO:0005862;muscle thin filament tropomyosin;0.0149637016469796!GO:0030055;cell-matrix junction;0.0150281525610018!GO:0040012;regulation of locomotion;0.0150943159508252!GO:0050811;GABA receptor binding;0.0159865369111359!GO:0051146;striated muscle cell differentiation;0.0159865369111359!GO:0007266;Rho protein signal transduction;0.0163339960927689!GO:0008186;RNA-dependent ATPase activity;0.0164547931419567!GO:0042692;muscle cell differentiation;0.0169337331190534!GO:0005585;collagen type II;0.0169596638190879!GO:0043034;costamere;0.0169596638190879!GO:0005924;cell-substrate adherens junction;0.0179522622906793!GO:0008287;protein serine/threonine phosphatase complex;0.0187977375098386!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0192502204949344!GO:0048154;S100 beta binding;0.019757985204473!GO:0006509;membrane protein ectodomain proteolysis;0.020145442363459!GO:0033619;membrane protein proteolysis;0.020145442363459!GO:0045792;negative regulation of cell size;0.0204504130461462!GO:0019904;protein domain specific binding;0.0207070763669701!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0207070763669701!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0207070763669701!GO:0045047;protein targeting to ER;0.0207070763669701!GO:0043681;protein import into mitochondrion;0.0208624803536895!GO:0005637;nuclear inner membrane;0.0212343412575633!GO:0016072;rRNA metabolic process;0.0214552405018282!GO:0030833;regulation of actin filament polymerization;0.0214552405018282!GO:0048741;skeletal muscle fiber development;0.0214552405018282!GO:0048747;muscle fiber development;0.0214552405018282!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0215266347259964!GO:0000059;protein import into nucleus, docking;0.0215266347259964!GO:0009081;branched chain family amino acid metabolic process;0.0219055203814794!GO:0042805;actinin binding;0.0223302904256472!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0229184966881878!GO:0022415;viral reproductive process;0.0229266542153408!GO:0030308;negative regulation of cell growth;0.0231013325812065!GO:0048041;focal adhesion formation;0.0231258726384005!GO:0016740;transferase activity;0.0232780491819949!GO:0048306;calcium-dependent protein binding;0.0234195182534424!GO:0051348;negative regulation of transferase activity;0.0234411339305357!GO:0006607;NLS-bearing substrate import into nucleus;0.0234717631218642!GO:0017022;myosin binding;0.0237084747586275!GO:0030100;regulation of endocytosis;0.0249157296967889!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0255004690300446!GO:0044430;cytoskeletal part;0.0255481202431077!GO:0005159;insulin-like growth factor receptor binding;0.0256138745252008!GO:0031901;early endosome membrane;0.0259528196412971!GO:0031625;ubiquitin protein ligase binding;0.0260382197331964!GO:0005518;collagen binding;0.0260677091595555!GO:0006839;mitochondrial transport;0.026180953141462!GO:0045947;negative regulation of translational initiation;0.0266654806354076!GO:0031072;heat shock protein binding;0.0269214978312556!GO:0030666;endocytic vesicle membrane;0.0270124401791296!GO:0006364;rRNA processing;0.0276885035290859!GO:0005584;collagen type I;0.0276885035290859!GO:0008147;structural constituent of bone;0.0277843699853757!GO:0048487;beta-tubulin binding;0.0277843699853757!GO:0046314;phosphocreatine biosynthetic process;0.0281591191873607!GO:0006603;phosphocreatine metabolic process;0.0281591191873607!GO:0004197;cysteine-type endopeptidase activity;0.0281813175788424!GO:0006401;RNA catabolic process;0.0282119718565029!GO:0004860;protein kinase inhibitor activity;0.0289015559212317!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0296121435943728!GO:0005100;Rho GTPase activator activity;0.0302920674212881!GO:0031628;opioid receptor binding;0.030553602111456!GO:0031852;mu-type opioid receptor binding;0.030553602111456!GO:0008312;7S RNA binding;0.0309563552603429!GO:0005813;centrosome;0.0312858818128021!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0316355258062227!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0318843909368169!GO:0019838;growth factor binding;0.0321041107330386!GO:0050681;androgen receptor binding;0.032116804283402!GO:0032940;secretion by cell;0.0321178921779495!GO:0005684;U2-dependent spliceosome;0.0323075616325442!GO:0033017;sarcoplasmic reticulum membrane;0.0333011853950731!GO:0031529;ruffle organization and biogenesis;0.034525634638791!GO:0030032;lamellipodium biogenesis;0.0345375516101159!GO:0030218;erythrocyte differentiation;0.0346349160893701!GO:0046983;protein dimerization activity;0.0349937639832503!GO:0009719;response to endogenous stimulus;0.0355048686619374!GO:0030140;trans-Golgi network transport vesicle;0.0357445311585406!GO:0030695;GTPase regulator activity;0.0362096841648598!GO:0048514;blood vessel morphogenesis;0.0372783832575137!GO:0003756;protein disulfide isomerase activity;0.0372783832575137!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0372783832575137!GO:0006635;fatty acid beta-oxidation;0.0377115534030935!GO:0004004;ATP-dependent RNA helicase activity;0.0381649161706663!GO:0016363;nuclear matrix;0.0384734322602863!GO:0030176;integral to endoplasmic reticulum membrane;0.0384816543090399!GO:0045663;positive regulation of myoblast differentiation;0.0387029915335512!GO:0030125;clathrin vesicle coat;0.0391210237380077!GO:0030665;clathrin coated vesicle membrane;0.0391210237380077!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0394390820316969!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0397299307197254!GO:0043022;ribosome binding;0.0402565641860483!GO:0030119;AP-type membrane coat adaptor complex;0.0403725733580725!GO:0035035;histone acetyltransferase binding;0.0417974157256891!GO:0005594;collagen type IX;0.0424046314879189!GO:0030135;coated vesicle;0.0424550653417384!GO:0051540;metal cluster binding;0.0424891011712949!GO:0051536;iron-sulfur cluster binding;0.0424891011712949!GO:0007006;mitochondrial membrane organization and biogenesis;0.0429742955090741!GO:0030911;TPR domain binding;0.0440575158745362!GO:0009225;nucleotide-sugar metabolic process;0.044994536952683!GO:0051259;protein oligomerization;0.0452239335651061!GO:0030139;endocytic vesicle;0.0458364920450583!GO:0051260;protein homooligomerization;0.0458364920450583!GO:0005869;dynactin complex;0.0458364920450583!GO:0051098;regulation of binding;0.0459210082783877!GO:0018106;peptidyl-histidine phosphorylation;0.0459210082783877!GO:0003711;transcription elongation regulator activity;0.0469401349550102!GO:0004111;creatine kinase activity;0.0473740149497046!GO:0006595;polyamine metabolic process;0.0483677799948461!GO:0008234;cysteine-type peptidase activity;0.0484550641975452!GO:0030522;intracellular receptor-mediated signaling pathway;0.0486311248224575
 
|sample_id=10058
 
|sample_id=10058
 
|sample_note=
 
|sample_note=
Line 75: Line 100:
 
|sample_tissue=trachea
 
|sample_tissue=trachea
 
|top_motifs=ZNF384:3.37911398153;TBP:3.33213708954;MEF2{A,B,C,D}:3.13503764265;SOX5:2.8565356611;MYBL2:2.63113227017;TAL1_TCF{3,4,12}:2.43662599355;IKZF2:2.37208824102;FOXL1:2.2813696425;SPZ1:2.23478172335;MAZ:2.15544766394;HMGA1,2:2.05051182377;GCM1,2:2.02954183912;GLI1..3:1.96940907822;LMO2:1.95942733428;EP300:1.91367094479;ZIC1..3:1.8815383318;AIRE:1.85854818792;HIC1:1.82414837678;GATA4:1.75684806398;IKZF1:1.70014120709;ATF6:1.69581337396;HOX{A4,D4}:1.6849171162;NR1H4:1.6695324384;PATZ1:1.64091088397;TFAP2{A,C}:1.61487190934;BPTF:1.61317965476;TOPORS:1.58929931504;KLF4:1.58803684553;DBP:1.56444159108;XBP1:1.55882441565;SMAD1..7,9:1.5553612227;MZF1:1.54559275065;FOXP1:1.53885154464;TLX1..3_NFIC{dimer}:1.49552241165;RXRA_VDR{dimer}:1.47472327454;SP1:1.46891818563;NFATC1..3:1.46498381416;TLX2:1.43460585069;NR6A1:1.42295138086;MED-1{core}:1.41584823782;PRDM1:1.3935144786;POU6F1:1.39215844227;TBX4,5:1.38114870111;SNAI1..3:1.38110077579;TFCP2:1.37113739537;GTF2I:1.36056944489;FOXO1,3,4:1.35039762269;ESR1:1.34438033449;EGR1..3:1.26478251629;TGIF1:1.2508099307;NKX2-1,4:1.21685578984;TFAP4:1.21588548138;ZNF238:1.21514365375;MYFfamily:1.19081728231;FOXM1:1.1789191772;FOXA2:1.16617950246;TEAD1:1.16123088489;GFI1B:1.13556848853;PAX5:1.13402177345;SRF:1.12987534638;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.10302017333;POU3F1..4:1.1006406376;FOX{D1,D2}:1.0785687995;TFAP2B:1.07314066282;ZNF423:1.05319742342;MTF1:1.02713468936;FOXD3:1.02558575533;ATF2:1.01791908987;LHX3,4:1.01488586108;CDC5L:1.00125202731;RBPJ:0.996944665513;PAX6:0.929518960811;NKX3-2:0.929295801253;BREu{core}:0.928147915681;GTF2A1,2:0.911499108816;NKX3-1:0.896123312115;RREB1:0.881445259997;NR5A1,2:0.845836348974;RFX2..5_RFXANK_RFXAP:0.832521726715;XCPE1{core}:0.82477810927;ZEB1:0.824417085492;MYOD1:0.822700537179;MTE{core}:0.819907540486;NKX2-3_NKX2-5:0.811569277739;HMX1:0.795095750833;AR:0.793400008741;RFX1:0.767878194767;UFEwm:0.735878837468;NHLH1,2:0.722808754327;CDX1,2,4:0.715169266247;ZBTB16:0.685613776616;SOX2:0.68460400754;IRF7:0.683123488934;CUX2:0.676075355244;PITX1..3:0.673289265316;HOX{A6,A7,B6,B7}:0.663572515927;T:0.634181631323;POU5F1:0.568675321468;PBX1:0.558334239704;ALX4:0.548336043739;HSF1,2:0.548178254908;POU1F1:0.541500693428;MAFB:0.532110411176;NKX6-1,2:0.527392813563;VSX1,2:0.513849138997;GZF1:0.460515674176;RORA:0.445021225829;ZFP161:0.434123569573;FOXQ1:0.431221027115;REST:0.424964734931;STAT2,4,6:0.406174227011;ZNF148:0.371083527646;GATA6:0.365201288121;SOX{8,9,10}:0.362044844861;GFI1:0.355011619209;NR3C1:0.323309177561;TEF:0.297527422453;FOXN1:0.263655986751;FOX{F1,F2,J1}:0.258174663954;HAND1,2:0.244136771492;SOX17:0.238157208402;HIF1A:0.16032463936;ALX1:0.145237897366;JUN:0.109452678426;TP53:0.0806845658233;NFIX:0.0685322919983;NANOG:0.0635219890316;EVI1:0.053708282759;NANOG{mouse}:0.0422687760758;ARID5B:0.0371821021905;HES1:0.0205911009494;ZBTB6:0.0033614982527;IRF1,2:-0.0312777530062;ETS1,2:-0.0664351213658;ESRRA:-0.0694522520736;NFIL3:-0.0779604149562;HBP1_HMGB_SSRP1_UBTF:-0.117706668405;NFE2L1:-0.14564825856;HOX{A5,B5}:-0.149544317826;EBF1:-0.153084569241;FOXP3:-0.173398890688;LEF1_TCF7_TCF7L1,2:-0.205280509099;PAX4:-0.214839546699;RXR{A,B,G}:-0.227579202714;PAX1,9:-0.233677171485;YY1:-0.235205460457;ZNF143:-0.238197166053;PDX1:-0.24460794687;FOX{I1,J2}:-0.251030656705;STAT1,3:-0.25189224256;STAT5{A,B}:-0.277061856536;HNF1A:-0.279757787543;DMAP1_NCOR{1,2}_SMARC:-0.330849482926;CREB1:-0.337688299097;SPI1:-0.375585054685;ELF1,2,4:-0.425512548963;EN1,2:-0.462220033854;ATF4:-0.490246360398;SREBF1,2:-0.492102713404;HNF4A_NR2F1,2:-0.499858573789;NKX2-2,8:-0.505101741067;SPIB:-0.534132209612;ADNP_IRX_SIX_ZHX:-0.53617083546;NFY{A,B,C}:-0.549528679346;PAX2:-0.568623504601;FOSL2:-0.570955126351;CEBPA,B_DDIT3:-0.581804358359;TFDP1:-0.608191016443;NFKB1_REL_RELA:-0.628283232209;E2F1..5:-0.633478767073;PRRX1,2:-0.636938058804;NRF1:-0.641667302953;PAX3,7:-0.65809284805;HLF:-0.672482904884;ATF5_CREB3:-0.691586563057;OCT4_SOX2{dimer}:-0.697414898851;ONECUT1,2:-0.705293181278;POU2F1..3:-0.727686287844;FOS_FOS{B,L1}_JUN{B,D}:-0.755360315454;AHR_ARNT_ARNT2:-0.782348362933;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.809641725;CRX:-0.8100543311;BACH2:-0.84075484586;RUNX1..3:-0.876438134273;HOXA9_MEIS1:-0.884618288991;bHLH_family:-0.94383682562;NFE2:-1.04384847733;NFE2L2:-1.05704194262;MYB:-1.33114768654;ELK1,4_GABP{A,B1}:-1.35543755196;PAX8:-1.41323233027;PPARG:-1.73482606635
 
|top_motifs=ZNF384:3.37911398153;TBP:3.33213708954;MEF2{A,B,C,D}:3.13503764265;SOX5:2.8565356611;MYBL2:2.63113227017;TAL1_TCF{3,4,12}:2.43662599355;IKZF2:2.37208824102;FOXL1:2.2813696425;SPZ1:2.23478172335;MAZ:2.15544766394;HMGA1,2:2.05051182377;GCM1,2:2.02954183912;GLI1..3:1.96940907822;LMO2:1.95942733428;EP300:1.91367094479;ZIC1..3:1.8815383318;AIRE:1.85854818792;HIC1:1.82414837678;GATA4:1.75684806398;IKZF1:1.70014120709;ATF6:1.69581337396;HOX{A4,D4}:1.6849171162;NR1H4:1.6695324384;PATZ1:1.64091088397;TFAP2{A,C}:1.61487190934;BPTF:1.61317965476;TOPORS:1.58929931504;KLF4:1.58803684553;DBP:1.56444159108;XBP1:1.55882441565;SMAD1..7,9:1.5553612227;MZF1:1.54559275065;FOXP1:1.53885154464;TLX1..3_NFIC{dimer}:1.49552241165;RXRA_VDR{dimer}:1.47472327454;SP1:1.46891818563;NFATC1..3:1.46498381416;TLX2:1.43460585069;NR6A1:1.42295138086;MED-1{core}:1.41584823782;PRDM1:1.3935144786;POU6F1:1.39215844227;TBX4,5:1.38114870111;SNAI1..3:1.38110077579;TFCP2:1.37113739537;GTF2I:1.36056944489;FOXO1,3,4:1.35039762269;ESR1:1.34438033449;EGR1..3:1.26478251629;TGIF1:1.2508099307;NKX2-1,4:1.21685578984;TFAP4:1.21588548138;ZNF238:1.21514365375;MYFfamily:1.19081728231;FOXM1:1.1789191772;FOXA2:1.16617950246;TEAD1:1.16123088489;GFI1B:1.13556848853;PAX5:1.13402177345;SRF:1.12987534638;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.10302017333;POU3F1..4:1.1006406376;FOX{D1,D2}:1.0785687995;TFAP2B:1.07314066282;ZNF423:1.05319742342;MTF1:1.02713468936;FOXD3:1.02558575533;ATF2:1.01791908987;LHX3,4:1.01488586108;CDC5L:1.00125202731;RBPJ:0.996944665513;PAX6:0.929518960811;NKX3-2:0.929295801253;BREu{core}:0.928147915681;GTF2A1,2:0.911499108816;NKX3-1:0.896123312115;RREB1:0.881445259997;NR5A1,2:0.845836348974;RFX2..5_RFXANK_RFXAP:0.832521726715;XCPE1{core}:0.82477810927;ZEB1:0.824417085492;MYOD1:0.822700537179;MTE{core}:0.819907540486;NKX2-3_NKX2-5:0.811569277739;HMX1:0.795095750833;AR:0.793400008741;RFX1:0.767878194767;UFEwm:0.735878837468;NHLH1,2:0.722808754327;CDX1,2,4:0.715169266247;ZBTB16:0.685613776616;SOX2:0.68460400754;IRF7:0.683123488934;CUX2:0.676075355244;PITX1..3:0.673289265316;HOX{A6,A7,B6,B7}:0.663572515927;T:0.634181631323;POU5F1:0.568675321468;PBX1:0.558334239704;ALX4:0.548336043739;HSF1,2:0.548178254908;POU1F1:0.541500693428;MAFB:0.532110411176;NKX6-1,2:0.527392813563;VSX1,2:0.513849138997;GZF1:0.460515674176;RORA:0.445021225829;ZFP161:0.434123569573;FOXQ1:0.431221027115;REST:0.424964734931;STAT2,4,6:0.406174227011;ZNF148:0.371083527646;GATA6:0.365201288121;SOX{8,9,10}:0.362044844861;GFI1:0.355011619209;NR3C1:0.323309177561;TEF:0.297527422453;FOXN1:0.263655986751;FOX{F1,F2,J1}:0.258174663954;HAND1,2:0.244136771492;SOX17:0.238157208402;HIF1A:0.16032463936;ALX1:0.145237897366;JUN:0.109452678426;TP53:0.0806845658233;NFIX:0.0685322919983;NANOG:0.0635219890316;EVI1:0.053708282759;NANOG{mouse}:0.0422687760758;ARID5B:0.0371821021905;HES1:0.0205911009494;ZBTB6:0.0033614982527;IRF1,2:-0.0312777530062;ETS1,2:-0.0664351213658;ESRRA:-0.0694522520736;NFIL3:-0.0779604149562;HBP1_HMGB_SSRP1_UBTF:-0.117706668405;NFE2L1:-0.14564825856;HOX{A5,B5}:-0.149544317826;EBF1:-0.153084569241;FOXP3:-0.173398890688;LEF1_TCF7_TCF7L1,2:-0.205280509099;PAX4:-0.214839546699;RXR{A,B,G}:-0.227579202714;PAX1,9:-0.233677171485;YY1:-0.235205460457;ZNF143:-0.238197166053;PDX1:-0.24460794687;FOX{I1,J2}:-0.251030656705;STAT1,3:-0.25189224256;STAT5{A,B}:-0.277061856536;HNF1A:-0.279757787543;DMAP1_NCOR{1,2}_SMARC:-0.330849482926;CREB1:-0.337688299097;SPI1:-0.375585054685;ELF1,2,4:-0.425512548963;EN1,2:-0.462220033854;ATF4:-0.490246360398;SREBF1,2:-0.492102713404;HNF4A_NR2F1,2:-0.499858573789;NKX2-2,8:-0.505101741067;SPIB:-0.534132209612;ADNP_IRX_SIX_ZHX:-0.53617083546;NFY{A,B,C}:-0.549528679346;PAX2:-0.568623504601;FOSL2:-0.570955126351;CEBPA,B_DDIT3:-0.581804358359;TFDP1:-0.608191016443;NFKB1_REL_RELA:-0.628283232209;E2F1..5:-0.633478767073;PRRX1,2:-0.636938058804;NRF1:-0.641667302953;PAX3,7:-0.65809284805;HLF:-0.672482904884;ATF5_CREB3:-0.691586563057;OCT4_SOX2{dimer}:-0.697414898851;ONECUT1,2:-0.705293181278;POU2F1..3:-0.727686287844;FOS_FOS{B,L1}_JUN{B,D}:-0.755360315454;AHR_ARNT_ARNT2:-0.782348362933;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.809641725;CRX:-0.8100543311;BACH2:-0.84075484586;RUNX1..3:-0.876438134273;HOXA9_MEIS1:-0.884618288991;bHLH_family:-0.94383682562;NFE2:-1.04384847733;NFE2L2:-1.05704194262;MYB:-1.33114768654;ELK1,4_GABP{A,B1}:-1.35543755196;PAX8:-1.41323233027;PPARG:-1.73482606635
 +
|xref=
 
}}
 
}}

Latest revision as of 09:55, 10 August 2017

Name:trachea, fetal, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11766
Sample type:tissues
Genomic View: UCSC
MicroRNAs:Including candidate novel miRNAs(CAGE samples)
Excluding candidate novel miRNAs(CAGE samples)
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuetrachea
dev stage29 weeks fetus
sexmale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyBiochain
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberB402231
catalog numberCat:RtHFN: Trachea
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

Accession numbers
MethodSample accession id
CAGE  SAMD00005467
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11766 CAGE DRX008754 DRR009626
Accession ID Hg19

Library idBAMCTSS
CNhs11766 DRZ001051 DRZ002436
Accession ID Hg38

Library idBAMCTSS
CNhs11766 DRZ012401 DRZ013786
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.084
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma--0.129
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.522
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0.221
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.396
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.125
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.984
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.139
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.216
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.319
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0.221
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed--0.0137
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.125
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0432
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.125
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.301
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.668
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0683
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus--0.00245
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.425
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.11
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.221
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0.425
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.367
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.221
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small--0.299
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.125
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.301
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.601
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.902
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.125
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.125
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.221
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0.301
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0.125
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.0373
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.902
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.125
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0.367
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0.221
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11766

Jaspar motif P-value
MA0002.2 1.24365e-5
MA0003.1 0.84
MA0004.1 0.012
MA0006.1 0.438
MA0007.1 0.307
MA0009.1 0.381
MA0014.1 0.232
MA0017.1 0.136
MA0018.2 0.354
MA0019.1 0.847
MA0024.1 0.246
MA0025.1 0.506
MA0027.1 0.846
MA0028.1 4.63707e-6
MA0029.1 0.294
MA0030.1 0.353
MA0031.1 0.982
MA0035.2 0.134
MA0038.1 0.385
MA0039.2 0.348
MA0040.1 0.507
MA0041.1 0.646
MA0042.1 0.931
MA0043.1 0.00987
MA0046.1 0.0676
MA0047.2 0.31
MA0048.1 0.269
MA0050.1 0.044
MA0051.1 0.0738
MA0052.1 3.16532e-8
MA0055.1 0.00265
MA0057.1 0.787
MA0058.1 0.00546
MA0059.1 0.00614
MA0060.1 0.00407
MA0061.1 1.62161e-5
MA0062.2 1.93481e-11
MA0065.2 0.00636
MA0066.1 0.0158
MA0067.1 0.0203
MA0068.1 0.00308
MA0069.1 0.775
MA0070.1 0.704
MA0071.1 0.24
MA0072.1 0.0662
MA0073.1 0.4
MA0074.1 0.71
MA0076.1 4.93133e-7
MA0077.1 0.836
MA0078.1 0.426
MA0079.2 0.92
MA0080.2 5.7276e-7
MA0081.1 0.00699
MA0083.1 0.417
MA0084.1 0.0676
MA0087.1 0.158
MA0088.1 0.00843
MA0090.1 0.138
MA0091.1 0.576
MA0092.1 0.458
MA0093.1 0.013
MA0099.2 2.14805e-21
MA0100.1 0.0935
MA0101.1 2.23669e-5
MA0102.2 0.174
MA0103.1 0.647
MA0104.2 7.66828e-4
MA0105.1 1.47502e-8
MA0106.1 0.051
MA0107.1 2.87975e-5
MA0108.2 3.28186e-18
MA0111.1 0.666
MA0112.2 0.225
MA0113.1 0.404
MA0114.1 0.0157
MA0115.1 0.666
MA0116.1 3.17815e-4
MA0117.1 0.21
MA0119.1 0.812
MA0122.1 0.57
MA0124.1 0.659
MA0125.1 0.606
MA0131.1 0.753
MA0135.1 0.216
MA0136.1 9.76623e-11
MA0137.2 0.767
MA0138.2 0.475
MA0139.1 0.00889
MA0140.1 0.0834
MA0141.1 0.0812
MA0142.1 0.0274
MA0143.1 0.573
MA0144.1 0.997
MA0145.1 0.415
MA0146.1 0.125
MA0147.1 4.27345e-4
MA0148.1 0.217
MA0149.1 0.0136
MA0150.1 1.64368e-10
MA0152.1 0.0136
MA0153.1 0.549
MA0154.1 0.0133
MA0155.1 0.488
MA0156.1 1.22291e-10
MA0157.1 0.594
MA0159.1 0.182
MA0160.1 0.0241
MA0162.1 0.904
MA0163.1 2.98634e-6
MA0164.1 0.485
MA0258.1 0.326
MA0259.1 0.0786



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11766

Novel motif P-value
1 0.0463
10 0.0424
100 0.683
101 0.728
102 0.41
103 0.102
104 0.623
105 0.819
106 0.977
107 0.133
108 0.47
109 0.00491
11 0.0924
110 0.127
111 0.0751
112 0.987
113 5.06755e-4
114 0.011
115 0.162
116 0.652
117 0.00824
118 0.0332
119 0.378
12 0.421
120 0.435
121 0.729
122 0.0994
123 0.522
124 0.161
125 0.38
126 0.532
127 0.198
128 0.612
129 0.289
13 0.185
130 0.948
131 0.601
132 0.0305
133 0.0985
134 0.606
135 0.655
136 0.178
137 0.344
138 0.363
139 0.295
14 0.722
140 0.753
141 0.521
142 0.701
143 0.00304
144 0.965
145 0.944
146 0.715
147 0.0937
148 0.302
149 0.773
15 0.0233
150 0.409
151 0.97
152 0.744
153 0.464
154 0.652
155 0.252
156 0.993
157 0.658
158 0.112
159 0.939
16 0.934
160 0.725
161 0.201
162 0.387
163 0.195
164 0.137
165 0.304
166 0.0823
167 0.0184
168 0.818
169 0.149
17 0.431
18 0.0254
19 0.504
2 0.133
20 0.11
21 0.588
22 0.482
23 0.812
24 0.175
25 0.464
26 0.0515
27 0.655
28 0.569
29 0.0204
3 0.188
30 0.08
31 0.94
32 1.75312e-4
33 0.194
34 0.644
35 0.147
36 0.03
37 0.0915
38 0.576
39 0.455
4 0.385
40 0.048
41 0.0635
42 0.202
43 0.0972
44 0.763
45 0.649
46 0.15
47 0.0636
48 0.201
49 0.0722
5 0.372
50 0.586
51 0.44
52 0.23
53 0.964
54 0.74
55 0.226
56 0.729
57 0.447
58 0.304
59 0.632
6 0.987
60 0.766
61 0.125
62 0.228
63 0.954
64 0.248
65 0.871
66 0.0116
67 0.368
68 0.526
69 0.538
7 0.452
70 0.122
71 0.0524
72 0.249
73 0.176
74 0.249
75 0.00862
76 0.159
77 0.613
78 0.169
79 0.623
8 0.2
80 0.37
81 0.409
82 0.603
83 0.828
84 0.841
85 0.772
86 0.315
87 0.0177
88 0.596
89 0.983
9 0.956
90 0.0555
91 0.301
92 0.967
93 0.331
94 0.0491
95 0.0047
96 0.248
97 0.939
98 0.337
99 0.199



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs11766


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0003126 (trachea)
0003127 (open tracheal system trachea)
0002100 (trunk)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0000464 (anatomical space)
0001005 (respiratory airway)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010058 (human trachea - fetal sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)