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FF:10262-104D1

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Name:Follicle Associated Epithelium, pool2
Species:Mouse (Mus musculus)
Library ID:CNhs13211
Sample type:tissues
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainBalb/c
tissuePeyer's patch
dev stageNA
sexfemale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationShinji Fukuda (RCAI)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberFAE_b
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

Accession numbers
MethodSample accession id
CAGE  DRS008784
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13211 CAGE DRX008921 DRR009795
Accession ID Mm9

Library idBAMCTSS
CNhs13211 DRZ001220 DRZ002603
Download raw sequence, BAM & CTSS
Mm9
BAMCTSS
[{{{mm9bam}}} download][{{{mm9ctss}}} donwload]
Mm10
BAMCTSS
[{{{mm10bam}}} download][{{{mm10ctss}}} donwload]


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

CNhs13211

MCL coexpression id Coexpression dpi cluster scores median value
0 0
1 0
10 0
100 0
1000 --0.00325
1001 --0.0346
1002 --0.116
1003 --0.125
1004 0
1005 1.03
1006 --0.326
1007 --0.141
1008 2.03
1009 --0.19
101 --0.0559
1010 0
1011 --0.217
1012 0
1013 0.294
1014 --0.0874
1015 --0.184
1016 --0.484
1017 0
1018 0.589
1019 0
102 0
1020 0
1021 0.244
1022 --0.0956
1023 0
1024 --0.305
1025 0
1026 0
1027 --0.048
1028 0
1029 --0.0623
103 --0.0887
1030 0.0645
1031 --0.911
1032 0.758
1033 --0.00204
1034 0.0344
1035 0
1036 --0.167
1037 0
1038 --0.178
1039 0.0463
104 0.0645
1040 --0.678
1041 0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs13211

Jaspar motif P-value
MA0002.2 0.00228
MA0003.1 0.222
MA0004.1 0.988
MA0006.1 0.116
MA0007.1 0.619
MA0009.1 0.549
MA0014.1 0.262
MA0017.1 8.17881e-19
MA0018.2 0.121
MA0019.1 0.109
MA0024.1 0.0843
MA0025.1 0.823
MA0027.1 0.942
MA0028.1 0.0635
MA0029.1 0.909
MA0030.1 0.514
MA0031.1 0.817
MA0035.2 6.83603e-4
MA0038.1 0.287
MA0039.2 0.00104
MA0040.1 0.253
MA0041.1 0.33
MA0042.1 0.514
MA0043.1 0.0333
MA0046.1 4.82555e-36
MA0047.2 0.0626
MA0048.1 0.599
MA0050.1 3.08958e-4
MA0051.1 0.00108
MA0052.1 2.54624e-4
MA0055.1 0.722
MA0057.1 0.12
MA0058.1 0.925
MA0059.1 0.491
MA0060.1 0.00455
MA0061.1 0.00443
MA0062.2 1.06509e-4
MA0065.2 9.03496e-11
MA0066.1 0.0779
MA0067.1 0.389
MA0068.1 0.147
MA0069.1 0.836
MA0070.1 0.0641
MA0071.1 0.21
MA0072.1 0.82
MA0073.1 0.764
MA0074.1 0.355
MA0076.1 0.134
MA0077.1 0.894
MA0078.1 0.547
MA0079.2 0.424
MA0080.2 5.36858e-10
MA0081.1 0.251
MA0083.1 0.00391
MA0084.1 0.551
MA0087.1 0.678
MA0088.1 0.177
MA0090.1 0.67
MA0091.1 0.536
MA0092.1 0.419
MA0093.1 0.956
MA0099.2 1.54722e-6
MA0100.1 0.673
MA0101.1 0.00206
MA0102.2 0.339
MA0103.1 2.00811e-6
MA0104.2 0.49
MA0105.1 0.00331
MA0106.1 0.199
MA0107.1 0.00295
MA0108.2 0.778
MA0111.1 0.915
MA0112.2 3.38454e-4
MA0113.1 0.481
MA0114.1 1.22626e-19
MA0115.1 2.93576e-12
MA0116.1 0.0503
MA0117.1 0.869
MA0119.1 0.182
MA0122.1 0.533
MA0124.1 0.251
MA0125.1 0.281
MA0131.1 0.794
MA0135.1 0.413
MA0136.1 1.10831e-16
MA0137.2 0.0982
MA0138.2 0.78
MA0139.1 0.0483
MA0140.1 0.104
MA0141.1 1.08004e-4
MA0142.1 0.111
MA0143.1 0.114
MA0144.1 0.0298
MA0145.1 0.0288
MA0146.1 0.216
MA0147.1 0.73
MA0148.1 0.0226
MA0149.1 0.0216
MA0150.1 0.0273
MA0152.1 0.113
MA0153.1 1.13201e-33
MA0154.1 0.0103
MA0155.1 0.743
MA0156.1 7.232e-9
MA0157.1 0.725
MA0159.1 2.21594e-4
MA0160.1 0.00442
MA0162.1 0.287
MA0163.1 0.00605
MA0164.1 0.464
MA0258.1 0.0172
MA0259.1 0.584



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs13211

Novel motif P-value
1 0.116
10 0.0981
100 0.85
101 0.797
102 0.894
103 0.0831
104 0.833
105 0.538
106 0.0401
107 0.179
108 0.744
109 0.0258
11 0.0966
110 0.188
111 0.0422
112 0.013
113 0.647
114 0.0503
115 0.541
116 0.191
117 0.0302
118 0.312
119 0.0666
12 0.576
120 0.387
121 0.377
122 0.915
123 0.115
124 0.626
125 0.53
126 0.118
127 0.173
128 0.12
129 0.104
13 0.00126
130 0.877
131 0.921
132 0.788
133 0.89
134 0.905
135 0.139
136 0.0981
137 0.796
138 0.292
139 0.118
14 0.739
140 0.113
141 0.0922
142 0.396
143 0.806
144 0.232
145 0.0756
146 0.427
147 0.991
148 0.379
149 0.907
15 0.145
150 0.434
151 0.504
152 0.0729
153 0.703
154 0.915
155 0.395
156 0.0445
157 0.504
158 0.732
159 0.705
160 0.561
161 0.397
162 0.456
163 0.31
164 0.151
165 0.134
166 0.577
167 0.511
168 0.907
169 0.0116
17 0.0621
18 0.711
19 0.233
2 0.735
20 0.683
21 0.495
22 0.348
23 0.625
24 0.712
25 0.425
26 0.00814
27 0.576
28 0.39
29 0.0557
3 0.0824
30 0.439
31 0.806
32 0.107
33 0.216
34 0.88
35 0.416
36 0.231
37 0.0387
38 0.401
39 0.395
4 0.344
40 0.173
41 0.463
42 0.442
43 0.188
44 0.0229
45 0.479
46 0.171
47 0.193
48 0.13
49 0.242
5 0.442
50 0.458
51 0.641
52 0.244
53 0.525
54 0.507
55 0.891
56 0.391
57 0.95
58 0.252
59 0.116
6 0.467
60 0.0478
61 0.259
62 0.124
63 0.121
64 0.612
65 0.231
66 0.975
67 0.47
68 0.019
69 0.716
7 0.0692
70 0.00519
71 0.0658
72 0.4
73 0.0517
74 0.422
75 0.018
76 0.638
77 0.109
78 0.0275
79 0.601
8 0.0988
80 0.679
81 0.743
82 0.045
83 0.113
84 0.217
85 0.0916
86 0.139
87 0.0232
88 0.428
89 0.193
9 0.832
90 0.0467
91 0.563
92 0.286
93 0.224
94 0.574
95 0.0283
96 0.735
97 0.864
98 0.322
99 0.267



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs13211


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001962 (gut-associated lymphoid tissue)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004923 (organ component layer)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0001961 (mucosa-associated lymphoid tissue)
0001744 (lymphoid tissue)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0002465 (lymphoid system)
0002193 (hemolymphoid system)
0002405 (immune system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011473 (mouse Follicle Associated Epithelium sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)