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{{f5samples
 
{{f5samples
|id=FF:10600-108E6
+
|DRA_sample_Accession=CAGE@SAMD00004833
|name=myxofibrosarcoma cell line:MFH-ino
+
|accession_numbers=CAGE;DRX007958;DRR008830;DRZ000255;DRZ001640;DRZ011605;DRZ012990
|sample_id=10600
+
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
|rna_tube_id=108E6
+
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
|rna_box=108
+
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:4231,DOID:201,DOID:0060100,DOID:1115,DOID:1907
|rna_position=E6
+
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100453,FF:0100400,FF:0100460
|sample_cell_lot=
+
|comment=
|sample_cell_catalog=RCB0749
+
|created_by=
|sample_company=RIKEN Bioresource centre
+
|creation_date=
|rna_lot_number=
+
|data_phase=2
|rna_catalog_number=
+
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
+
|def=
|sample_strain=
+
|expression_enrichment_score=chr6:10415276..10415341,-!p2@TFAP2A!2.12!156.63!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.90!128.83!TFAP2A;;chr1:197886461..197886558,+!p1@LHX9!1.72!51.64!LHX9;;chr2:176969228..176969260,+!p1@HOXD11!1.54!33.48!HOXD11;;chr8:106330656..106330684,+!p1@ZFPM2!1.53!84.56!ZFPM2;;chr2:223163706..223163730,-!p1@PAX3!1.51!31.21!PAX3;;chr17:7492684..7492778,-!p2@SOX15!1.50!63.56!SOX15;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.35!21.57!ZBED1;;chr6:10412576..10412599,-!p5@TFAP2A!1.34!21.00!TFAP2A;;chr6:10415263..10415274,-!p8@TFAP2A!1.32!19.86!TFAP2A;;chr10:8095593..8095625,+!p3@GATA3!1.28!21.00!GATA3;;chr8:106330696..106330719,+!p2@ZFPM2!1.27!22.13!ZFPM2;;chr2:176969179..176969226,+!p2@HOXD11!1.27!17.59!HOXD11;;chr8:67525443..67525459,-!p2@MYBL1!1.26!25.54!MYBL1;;chr11:46299199..46299233,+!p1@CREB3L1!1.25!85.69!CREB3L1;;chr14:73360799..73360817,-!p1@DPF3!1.23!54.48!DPF3;;chr6:10415484..10415508,-!p3@TFAP2A!1.21!15.32!TFAP2A;;chr16:86600426..86600441,+!p1@FOXC2!1.20!36.32!FOXC2;;chr12:66218255..66218304,+!p3@HMGA2!1.19!39.16!HMGA2;;chr10:8096772..8096787,+!p2@GATA3!1.19!17.03!GATA3;;chr6:10412392..10412409,-!p4@TFAP2A!1.19!16.46!TFAP2A;;chr12:66218003..66218018,+!p9@HMGA2!1.18!17.03!HMGA2;;chr15:96873984..96873999,+!p3@NR2F2!1.15!95.34!NR2F2;;chr17:46687959..46688007,-!p2@HOXB7!1.15!18.16!HOXB7;;chr6:85474299..85474324,-!p1@TBX18!1.14!22.70!TBX18;;chr20:55204351..55204377,+!p1@TFAP2C!1.14!16.46!TFAP2C;;chr10:8096631..8096660,+!p1@GATA3!1.14!15.32!GATA3;;chr15:67418119..67418162,+!p5@SMAD3!1.12!13.62!SMAD3;;chr10:48355030..48355090,+!p1@ZNF488!1.11!15.32!ZNF488;;chr2:185463247..185463263,+!p1@ZNF804A!1.10!20.43!ZNF804A;;chr6:45390025..45390076,+!p2@RUNX2!1.07!26.11!RUNX2;;chr6:45390002..45390023,+!p6@RUNX2!1.06!18.16!RUNX2;;chr12:66218598..66218645,+!p2@HMGA2!1.03!45.97!HMGA2;;chr11:65667884..65667895,-!p2@FOSL1!1.03!38.59!FOSL1;;chr1:6479968..6479986,-!p1@HES2!1.03!9.65!HES2;;chr14:61116183..61116208,-!p1@SIX1!1.02!36.32!SIX1;;chr12:77459306..77459365,-!p1@E2F7!1.01!118.04!E2F7;;chr8:67525473..67525518,-!p1@MYBL1!1.01!21.57!MYBL1;;chr12:66218378..66218401,+!p6@HMGA2!0.99!13.62!HMGA2;;chr11:46299539..46299620,+!p2@CREB3L1!0.97!14.19!CREB3L1;;chr15:96874012..96874042,+!p2@NR2F2!0.95!73.21!NR2F2;;chr7:19157248..19157268,-!p1@TWIST1!0.95!22.70!TWIST1;;chr8:77593474..77593612,+!p1@ZFHX4!0.94!34.05!ZFHX4;;chr3:157823517..157823562,-!p1@SHOX2!0.92!7.95!SHOX2;;chr17:17726907..17726958,-!p2@SREBF1!0.90!45.40!SREBF1;;chr2:19558373..19558392,-!p1@OSR1!0.90!19.86!OSR1;;chr7:19157043..19157088,-!p2@TWIST1!0.90!18.16!TWIST1;;chr2:200323414..200323455,-!p1@SATB2!0.90!15.32!SATB2;;chr12:66218212..66218244,+!p5@HMGA2!0.90!10.22!HMGA2;;chr20:21494684..21494708,-!p1@NKX2-2!0.89!6.81!NKX2-2;;chr2:176994408..176994492,+!p1@HOXD8!0.89!6.81!HOXD8;;chrX:66763856..66763896,+!p1@AR!0.88!9.65!AR;;chr7:28448965..28448994,+!p2@CREB5!0.86!23.27!CREB5;;chr9:22447422..22447483,+!p1@DMRTA1!0.86!6.24!DMRTA1;;chr12:3068544..3068597,+!p1@TEAD4!0.85!39.16!TEAD4;;chr14:62162285..62162296,+!p3@HIF1A!0.84!32.92!HIF1A;;chr5:321810..321877,+!p1@AHRR!0.84!19.86!AHRR;;chr3:150126759..150126784,+!p2@TSC22D2!0.83!28.38!TSC22D2;;chr19:42636586..42636607,-!p1@POU2F2!0.82!16.46!POU2F2;;chr3:114343870..114343887,-!p9@ZBTB20!0.82!5.68!ZBTB20;;chr6:45389835..45389861,+!p7@RUNX2!0.81!9.08!RUNX2;;chr11:65686732..65686756,+!p2@DRAP1!0.80!24.40!DRAP1;;chr15:67418047..67418093,+!p4@SMAD3!0.80!6.81!SMAD3;;chr3:114343826..114343869,-!p4@ZBTB20!0.79!10.78!ZBTB20;;chr6:45390077..45390105,+!p9@RUNX2!0.79!6.81!RUNX2;;chr17:46682321..46682362,-!p1@HOXB6!0.79!5.11!HOXB6;;chr12:2986275..2986363,-!p1@FOXM1!0.78!55.05!FOXM1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.78!48.24!PPP1R13L;;chr17:41277372..41277418,-!p1@BRCA1!0.78!19.86!BRCA1;;chr9:115818951..115819011,-!p1@ZFP37!0.78!16.46!ZFP37;;chr17:41623009..41623053,-!p4@ETV4!0.78!8.51!ETV4;;chr15:96873921..96873946,+!p1@NR2F2!0.75!145.28!NR2F2;;chr17:41623692..41623715,-!p1@ETV4!0.75!21.57!ETV4;;chr12:80084737..80084763,-!p3@PAWR!0.75!18.73!PAWR;;chr15:96874244..96874259,+!p5@NR2F2!0.75!11.92!NR2F2;;chr17:41622834..41622883,-!p6@ETV4!0.75!5.68!ETV4;;chr12:54694758..54694805,-!p1@NFE2!0.75!5.68!NFE2;;chr15:96874216..96874236,+!p13@NR2F2!0.74!7.38!NR2F2;;chr2:185463158..185463181,+!p2@ZNF804A!0.74!4.54!ZNF804A;;chr4:111558135..111558198,-!p2@PITX2!0.74!4.54!PITX2;;chr4:1873011..1873063,+!p2@WHSC1!0.72!15.89!WHSC1;;chr18:19749541..19749557,+!p1@GATA6!0.72!14.76!GATA6;;chr8:67525524..67525543,-!p3@MYBL1!0.72!7.38!MYBL1;;chr3:169381420..169381535,-!p1@MECOM!0.72!5.11!MECOM;;chr14:62162258..62162269,+!p2@HIF1A!0.71!44.83!HIF1A;;chr12:80084303..80084332,-!p1@PAWR!0.71!27.24!PAWR;;chr20:42295713..42295738,+!p2@MYBL2!0.71!27.24!MYBL2;;chr6:45389791..45389832,+!p3@RUNX2!0.71!11.35!RUNX2;;chr20:42295745..42295765,+!p1@MYBL2!0.70!74.91!MYBL2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.70!45.97!GLIS2;;chr5:72744594..72744609,-!p1@FOXD1!0.70!20.43!FOXD1;;chr11:65686802..65686818,+!p6@DRAP1!0.70!7.38!DRAP1;;chr5:43067636..43067674,+!p6@ZNF131!0.70!5.68!ZNF131;;chr16:31076332..31076388,-!p3@ZNF668!0.70!3.97!ZNF668;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.70!3.97!SEBOX;;chr17:46687935..46687950,-!p3@HOXB7!0.70!3.97!HOXB7;;chr3:138665937..138665968,-!p1@FOXL2!0.70!3.97!FOXL2;;chr20:306489..306564,+!p1@SOX12!0.69!48.24!SOX12;;chr5:176738887..176738934,-!p1@MXD3!0.69!29.51!MXD3;;chr9:109625229..109625282,+!p2@ZNF462!0.69!6.81!ZNF462;;chr6:20402102..20402152,+!p1@E2F3!0.68!17.59!E2F3;;chr6:126240380..126240430,+!p2@NCOA7!0.68!10.78!NCOA7;;chr12:66218183..66218209,+!p4@HMGA2!0.68!7.95!HMGA2;;chr17:41623075..41623101,-!p9@ETV4!0.68!4.54!ETV4;;chr17:46622229..46622257,-!p6@HOXB2!0.68!4.54!HOXB2;;chr19:45971246..45971265,+!p1@FOSB!0.67!80.02!FOSB;;chr19:57946684..57946723,+!p1@ZNF749!0.67!47.10!ZNF749;;chr14:62162224..62162254,+!p1@HIF1A!0.66!611.21!HIF1A;;chr11:65667846..65667868,-!p1@FOSL1!0.65!107.83!FOSL1;;chr4:26322419..26322479,+!p2@RBPJ!0.65!49.37!RBPJ;;chr19:48774586..48774670,+!p1@ZNF114!0.65!4.54!ZNF114;;chr19:56152437..56152467,+!p3@ZNF580!0.64!19.86!ZNF580;;chr2:239148671..239148686,-!p1@HES6!0.64!14.19!HES6;;chr20:50721803..50721857,-!p2@ZFP64!0.64!5.68!ZFP64;;chr6:45390300..45390335,+!p4@RUNX2!0.64!5.68!RUNX2;;chr11:707063..707088,-!p4@DEAF1!0.64!4.54!DEAF1;;chr12:66218443..66218461,+!p8@HMGA2!0.64!4.54!HMGA2;;chr4:81105027..81105039,+!p3@PRDM8!0.64!3.97!PRDM8;;chr4:299227..299272,-!p1@ZNF732!0.64!3.41!ZNF732;;chr6:45389985..45389996,+!p18@RUNX2!0.64!3.41!RUNX2;;chrX:66763914..66763933,+!p3@AR!0.64!3.41!AR;;chr16:86600870..86600921,+!p2@FOXC2!0.64!3.41!FOXC2;;chr17:7493405..7493419,-!p1@SOX15!0.64!3.41!SOX15;;chr12:66218420..66218439,+!p12@HMGA2!0.64!3.41!HMGA2;;chr3:128206762..128206781,-!p2@GATA2!0.63!23.84!GATA2;;chrX:66763815..66763854,+!p2@AR!0.63!4.54!AR;;chr19:45909594..45909625,-!p2@PPP1R13L!0.62!17.03!PPP1R13L;;chr9:2158443..2158481,+!p2@SMARCA2!0.62!10.22!SMARCA2;;chr20:42543506..42543549,+!p2@TOX2!0.62!8.51!TOX2;;chr6:85473156..85473210,-!p2@TBX18!0.62!3.97!TBX18;;chr3:12329320..12329338,+!p4@PPARG!0.62!3.41!PPARG;;chr12:66218836..66218888,+!p1@HMGA2!0.61!34.62!HMGA2;;chr15:96874927..96874938,+!p8@NR2F2!0.61!7.38!NR2F2;;chr1:247171347..247171366,-!p2@ZNF695!0.61!6.24!ZNF695;;chr6:34204672..34204692,+!p1@HMGA1!0.60!413.15!HMGA1;;chr12:19592602..19592648,+!p1@AEBP2!0.60!42.00!AEBP2;;chr2:121493425..121493474,+!p1@GLI2!0.60!7.38!GLI2;;chr20:62462566..62462631,-!p1@ZBTB46!0.60!6.24!ZBTB46;;chr6:42419649..42419673,-!p3@TRERF1!0.60!5.68!TRERF1;;chr20:32274179..32274213,-!p1@E2F1!0.59!23.27!E2F1;;chr5:43120995..43121052,+!p1@ZNF131!0.59!17.59!ZNF131;;chr12:80085061..80085119,-!p6@PAWR!0.59!5.11!PAWR;;chr6:34204921..34204939,+!p3@HMGA1!0.58!104.99!HMGA1;;chr17:17740287..17740307,-!p1@SREBF1!0.58!91.94!SREBF1;;chr16:67596498..67596520,+!p2@CTCF!0.58!11.92!CTCF;;chr19:37096139..37096170,-!p2@ZNF529!0.58!9.08!ZNF529;;chr19:47922750..47922795,-!p1@MEIS3!0.58!5.11!MEIS3;;chr1:44513995..44514031,+!p1@KLF17!0.58!2.84!KLF17;;chr21:38071430..38071456,+!p1@SIM2!0.58!2.84!SIM2;;chr7:27190547..27190591,-!p1@HOXA6!0.58!2.84!HOXA6;;chr8:77593448..77593471,+!p2@ZFHX4!0.58!2.84!ZFHX4;;chr12:54402745..54402788,+!p1@HOXC8!0.58!2.84!HOXC8;;chr13:100634130..100634143,+!p3@ZIC2!0.58!2.84!ZIC2;;chr2:172967276..172967296,-!p3@DLX2!0.58!2.84!DLX2;;chr3:138665969..138665993,-!p2@FOXL2!0.58!2.84!FOXL2;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.58!2.84!SEBOX;;chr17:41622982..41623001,-!p11@ETV4!0.58!2.84!ETV4;;chr18:55102598..55102623,+!p1@ONECUT2!0.58!2.84!ONECUT2;;chr2:43453734..43453751,-!p1@ZFP36L2!0.57!362.08!ZFP36L2;;chr1:226595741..226595818,-!p1@PARP1!0.57!175.36!PARP1;;chr12:2986206..2986258,-!p2@FOXM1!0.57!19.86!FOXM1;;chr10:63809013..63809041,+!p3@ARID5B!0.57!18.16!ARID5B;;chr20:42543441..42543497,+!p1@TOX2!0.57!14.76!TOX2;;chr10:94449703..94449718,+!p1@HHEX!0.57!12.49!HHEX;;chr19:37096194..37096235,+!p1@ZNF382!0.57!10.22!ZNF382;;chr19:56092252..56092287,-!p2@ZNF579!0.57!9.08!ZNF579;;chr17:7388010..7388017,-!p5@ZBTB4!0.57!5.11!ZBTB4;;chr2:239756739..239756755,+!p2@TWIST2!0.57!5.11!TWIST2;;chr17:41622765..41622821,-!p2@ETV4!0.57!4.54!ETV4;;chr1:205601000..205601055,-!p2@ELK4!0.56!13.05!ELK4;;chr19:31840313..31840380,-!p1@TSHZ3!0.56!7.95!TSHZ3;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.56!2.84!GLIS1;;chr12:66218152..66218174,+!p10@HMGA2!0.56!2.84!HMGA2;;chr8:28243813..28243839,-!p4@ZNF395!0.55!5.11!ZNF395;;chr15:56535722..56535764,-!p3@RFX7!0.55!3.97!RFX7;;chr8:49833978..49833996,-!p1@SNAI2!0.54!64.13!SNAI2;;chr9:14314131..14314147,-!p2@NFIB!0.54!17.03!NFIB;;chr19:44952635..44952668,-!p1@ZNF229!0.54!15.32!ZNF229;;chr13:74708029..74708077,-!p2@KLF12!0.54!8.51!KLF12;;chr1:153939955..153940009,+!p2@CREB3L4!0.54!6.81!CREB3L4;;chr6:45390269..45390298,+!p5@RUNX2!0.54!4.54!RUNX2;;chr19:56152361..56152434,+!p1@ZNF580!0.53!82.29!ZNF580;;chr14:45722360..45722415,-!p1@MIS18BP1!0.53!47.67!MIS18BP1;;chr19:49865646..49865718,-!p1@TEAD2!0.53!26.11!TEAD2;;chr10:114710098..114710130,+!p2@TCF7L2!0.53!22.70!TCF7L2;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AR!0.20!0.57!AR;;chr9:16871087..16871103,-!p20@BNC2!0.20!0.57!BNC2;;chr9:2157749..2157764,+!p26@SMARCA2!0.20!0.57!SMARCA2;;chr9:77112225..77112238,+!p2@RORB!0.20!0.57!RORB;;chr9:841719..841728,+!p2@DMRT1!0.20!0.57!DMRT1;;chrX:89176902..89176913,+!p1@TGIF2LX!0.20!0.57!TGIF2LX;;chr9:2159800..2159825,+!p15@SMARCA2!0.20!0.57!SMARCA2;;chr9:73028786..73028797,-!p11@KLF9!0.20!0.57!KLF9;;chrX:56259106..56259140,+!p8@KLF8!0.20!0.57!KLF8;;chr9:33295026..33295035,+!p2@NFX1!0.20!0.57!NFX1;;chr5:134369222..134369237,-!p8@PITX1!0.20!0.57!PITX1;;chr5:134369973..134369984,-!p3@PITX1!0.20!0.57!PITX1;;chr5:142780189..142780223,-!p6@NR3C1!0.20!0.57!NR3C1;;chr5:142784911..142784925,-!p15@NR3C1!0.20!0.57!NR3C1;;chr5:180288373..180288380,-!p5@ZFP62!0.20!0.57!ZFP62;;chr5:92918768..92918783,+!p8@NR2F1!0.20!0.57!NR2F1;;chr6:10420285..10420304,-!p18@TFAP2A!0.20!0.57!TFAP2A;;chr6:126111875..126111886,+!p10@NCOA7!0.20!0.57!NCOA7;;chr6:126240490..126240501,+!p11@NCOA7!0.20!0.57!NCOA7;;chr6:1312155..1312187,+!p2@FOXQ1!0.20!0.57!FOXQ1;;chr6:143095902..143095910,-!p3@HIVEP2!0.20!0.57!HIVEP2;;chr6:28321971..28321995,-!p1@ZNF323!0.20!0.57!ZNF323;;chr6:45389966..45389977,+!p23@RUNX2!0.20!0.57!RUNX2;;chr6:45390137..45390148,+!p12@RUNX2!0.20!0.57!RUNX2;;chr6:7108769..7108785,+!p11@RREB1!0.20!0.57!RREB1;;chr6:85473227..85473243,-!p5@TBX18!0.20!0.57!TBX18;;chr6:85474198..85474212,-!p3@TBX18!0.20!0.57!TBX18;;chr7:148982396..148982408,+!p4@ZNF783!0.20!0.57!ZNF783;;chr7:150945865..150945896,-!p4@SMARCD3!0.20!0.57!SMARCD3;;chr7:27153613..27153630,-!p6@HOXA3!0.20!0.57!HOXA3;;chr7:42276771..42276782,-!p4@GLI3!0.20!0.57!GLI3;;chr7:96634850..96634874,+!p3@DLX6!0.20!0.57!DLX6;;chr7:96635277..96635301,+!p7@DLX6!0.20!0.57!DLX6;;chr7:97840743..97840786,+!p1@BHLHA15!0.20!0.57!BHLHA15;;chr8:106330515..106330525,+!p6@ZFPM2!0.20!0.57!ZFPM2;;chr8:57123898..57123909,-!p3@PLAG1!0.20!0.57!PLAG1;;chr8:60031840..60031869,-!p5@TOX!0.20!0.57!TOX;;chr8:67525467..67525472,-!p4@MYBL1!0.20!0.57!MYBL1;;chr8:71157578..71157592,-!p15@NCOA2!0.20!0.57!NCOA2;;chr8:72756380..72756427,-!p8@MSC!0.20!0.57!MSC;;chr8:77595678..77595688,+!p9@ZFHX4!0.20!0.57!ZFHX4;;chr9:102584278..102584285,+!p5@NR4A3!0.20!0.57!NR4A3;;chr19:38183228..38183242,-!p4@ZNF781!0.20!0.57!ZNF781;;chr19:38714847..38714878,-!p3@DPF1!0.20!0.57!DPF1;;chr19:42636625..42636632,-!p2@POU2F2!0.20!0.57!POU2F2;;chr19:44860847..44860861,-!p4@ZFP112,p4@ZNF285!0.20!0.57!ZFP112;;chr19:45251395..45251432,+!p8@BCL3!0.20!0.57!BCL3;;chr19:45579699..45579704,-!p3@ZNF296!0.20!0.57!ZNF296;;chr19:49140692..49140709,-!p5@DBP!0.20!0.57!DBP;;chr19:54024313..54024361,+!p7@ZNF331!0.20!0.57!ZNF331;;chr19:54024369..54024390,+!p22@ZNF331!0.20!0.57!ZNF331;;chr19:54041467..54041479,+!p13@ZNF331!0.20!0.57!ZNF331;;chr19:54041508..54041527,+!p8@ZNF331!0.20!0.57!ZNF331;;chr19:56146421..56146438,+!p13@ZNF580,p4@ZNF581!0.20!0.57!ZNF580;;chr19:57946675..57946680,+!p2@ZNF749!0.20!0.57!ZNF749;;chr19:58740449..58740456,+!p3@ZNF544!0.20!0.57!ZNF544;;chr19:9420326..9420349,-!p@chr19:9420326..9420349,-!0.20!0.57!ZNF699;;chr1:117602977..117602984,+!p3@TTF2!0.20!0.57!TTF2;;chr1:155491214..155491227,-!p12@ASH1L!0.20!0.57!ASH1L;;chr1:158969727..158969749,+!p11@IFI16!0.20!0.57!IFI16;;chr1:158985686..158985719,+!p15@IFI16!0.20!0.57!IFI16;;chr1:164528866..164528877,+!p12@PBX1!0.20!0.57!PBX1;;chr1:170632647..170632659,+!p17@PRRX1!0.20!0.57!PRRX1;;chr1:173837572..173837581,+!p3@ZBTB37!0.20!0.57!ZBTB37;;chr1:202776145..202776171,-!p10@KDM5B!0.20!0.57!KDM5B;;chr1:211432862..211432871,+!p10@RCOR3!0.20!0.57!RCOR3;;chr1:212873826..212873849,-!p6@BATF3!0.20!0.57!BATF3;;chr1:221052669..221052678,+!p12@HLX!0.20!0.57!HLX;;chr1:42384322..42384336,-!p5@HIVEP3!0.20!0.57!HIVEP3;;chr1:47779845..47779848,-!p3@STIL,p8@TAL1!0.20!0.57!TAL1;;
|sample_dev_stage=
+
|ffid_belonging_in_development=CL:0000134
|sample_tissue=ANATOMICAL SYSTEM
 
|sample_donor(cell lot)=
 
|sample_sex=female
 
|sample_age=unknown
 
|sample_ethnicity=J
 
|rna_rin=
 
|rna_od260/230=2.11
 
|rna_od260/280=2.14
 
|sample_cell_type=fibroblast
 
|sample_cell_line=MFH-ino
 
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
 
|sample_experimental_condition=
 
|sample_disease=myxofibrosarcoma
 
|rna_sample_type=total RNA
 
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
 
|rna_weight_ug=34.01343
 
|rna_concentration=0.72369
 
|sample_note=
 
|profile_hcage=CNhs11729,LSID819,release009,COMPLETED
 
|profile_cagescan=,,,
 
|profile_srnaseq=,,,
 
|profile_rnaseq=,,,
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371
 
|ancestors_in_anatomy_facet=UBERON:0000014,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0001062,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0002416,UBERON:0003102
 
|ancestors_in_disease_facet=DOID:0050686,DOID:0050687,DOID:0060100,DOID:1115,DOID:14566,DOID:162,DOID:1907,DOID:201,DOID:4,DOID:4231
 
|sample_description=
 
 
|fonse_cell_line=FF:0100400,FF:0100453
 
|fonse_cell_line=FF:0100400,FF:0100453
 
|fonse_cell_line_closure=FF:0100400,FF:0100453
 
|fonse_cell_line_closure=FF:0100400,FF:0100453
Line 66: Line 40:
 
|fonse_treatment=
 
|fonse_treatment=
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
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|comment=
 
|created_by=
 
|creation_date=
 
|def=
 
 
|has_quality=
 
|has_quality=
|is_a=CL:0002620;;DOID:1907;;EFO:0002091;;FF:0000003;;FF:0000210;;FF:0100460
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|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/myxofibrosarcoma%2520cell%2520line%253aMFH-ino.CNhs11729.10600-108E6.hg19.nobarcode.bam
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/myxofibrosarcoma%2520cell%2520line%253aMFH-ino.CNhs11729.10600-108E6.hg19.ctss.bed.gz
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|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/myxofibrosarcoma%2520cell%2520line%253aMFH-ino.CNhs11729.10600-108E6.hg19.nobarcode.rdna.fa.gz
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|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/myxofibrosarcoma%2520cell%2520line%253aMFH-ino.CNhs11729.10600-108E6.hg38.nobarcode.bam
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|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/myxofibrosarcoma%2520cell%2520line%253aMFH-ino.CNhs11729.10600-108E6.hg38.nobarcode.ctss.bed.gz
 +
|id=FF:10600-108E6
 +
|is_a=CL:0002620;;DOID:1907;;EFO:0002091;;FF:0000210;;FF:0100460
 +
|is_obsolete=
 +
|library_id=CNhs11729
 +
|library_id_phase_based=2:CNhs11729
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|microRNAs=
 +
|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10600
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10600
 +
|name=myxofibrosarcoma cell line:MFH-ino
 
|namespace=FANTOM5
 
|namespace=FANTOM5
 
|part_of=
 
|part_of=
 +
|profile_cagescan=,,,
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|profile_hcage=CNhs11729,LSID819,release009,COMPLETED
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|profile_rnaseq=
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|profile_srnaseq=,,,
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|refex=http://refex.dbcls.jp/genelist.php?lang
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 +
|rna_box=108
 +
|rna_catalog_number=
 +
|rna_concentration=0.72369
 +
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
 +
|rna_lot_number=
 +
|rna_od260/230=2.11
 +
|rna_od260/280=2.14
 +
|rna_position=E6
 +
|rna_rin=
 +
|rna_sample_type=total RNA
 +
|rna_tube_id=1.08E+08
 +
|rna_weight_ug=34.01343
 +
|sample_age=unknown
 +
|sample_category=cell lines
 +
|sample_cell_catalog=RCB0749
 +
|sample_cell_line=MFH-ino
 +
|sample_cell_lot=
 +
|sample_cell_type=fibroblast
 +
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
 +
|sample_company=RIKEN Bioresource centre
 +
|sample_description=
 +
|sample_dev_stage=
 +
|sample_disease=myxofibrosarcoma
 +
|sample_donor(cell lot)=
 +
|sample_ethnicity=J
 +
|sample_experimental_condition=
 +
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.34424406690744e-255!GO:0043226;organelle;7.46725475622058e-207!GO:0043229;intracellular organelle;2.86979458381129e-206!GO:0043231;intracellular membrane-bound organelle;5.80561846931752e-203!GO:0043227;membrane-bound organelle;7.16846989874252e-203!GO:0005737;cytoplasm;6.51566991933309e-171!GO:0044422;organelle part;2.86423372798376e-141!GO:0044446;intracellular organelle part;6.50609171619969e-140!GO:0044444;cytoplasmic part;2.21501053962483e-111!GO:0032991;macromolecular complex;1.66118676219881e-100!GO:0005634;nucleus;2.63091484651067e-98!GO:0044237;cellular metabolic process;3.14793777946587e-95!GO:0044238;primary metabolic process;4.18889569237993e-95!GO:0043170;macromolecule metabolic process;1.76193576309638e-90!GO:0030529;ribonucleoprotein complex;1.32447104865117e-81!GO:0005515;protein binding;3.94815070277692e-81!GO:0044428;nuclear part;1.6902033749349e-79!GO:0043233;organelle lumen;2.08311385267455e-77!GO:0031974;membrane-enclosed lumen;2.08311385267455e-77!GO:0003723;RNA binding;4.15596146642257e-71!GO:0005739;mitochondrion;1.5407383589754e-61!GO:0043283;biopolymer metabolic process;1.068097253459e-56!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.28993125574165e-54!GO:0016043;cellular component organization and biogenesis;2.17419906994966e-53!GO:0043234;protein complex;5.044721131938e-52!GO:0031981;nuclear lumen;1.15900629232664e-50!GO:0006396;RNA processing;5.92965874456745e-50!GO:0010467;gene expression;7.03455195559802e-49!GO:0005840;ribosome;4.55926010895357e-46!GO:0019538;protein metabolic process;4.65524083666088e-45!GO:0043228;non-membrane-bound organelle;1.43175513360958e-44!GO:0043232;intracellular non-membrane-bound organelle;1.43175513360958e-44!GO:0006412;translation;1.5003865843133e-43!GO:0006259;DNA metabolic process;2.41951744682745e-43!GO:0033036;macromolecule localization;1.62904601504732e-41!GO:0006996;organelle organization and biogenesis;3.74467795712492e-40!GO:0044260;cellular macromolecule metabolic process;5.52460102485032e-40!GO:0015031;protein transport;8.28285259044295e-40!GO:0044429;mitochondrial part;1.05588189197503e-39!GO:0003735;structural constituent of ribosome;1.31418515022581e-39!GO:0044267;cellular protein metabolic process;1.4659518944289e-39!GO:0016071;mRNA metabolic process;7.51178653824976e-39!GO:0031090;organelle membrane;4.37817004151307e-38!GO:0008104;protein localization;1.7868061796234e-37!GO:0045184;establishment of protein localization;3.98062765974412e-37!GO:0031967;organelle envelope;1.96194336756869e-36!GO:0031975;envelope;3.0908237780763e-36!GO:0046907;intracellular transport;4.29415699265232e-36!GO:0008380;RNA splicing;1.53786033505493e-35!GO:0033279;ribosomal subunit;2.71707880273854e-35!GO:0006397;mRNA processing;1.51677688007902e-34!GO:0005829;cytosol;2.05311893406268e-34!GO:0009058;biosynthetic process;1.83575045642622e-33!GO:0007049;cell cycle;3.45482244771375e-33!GO:0003676;nucleic acid binding;6.41472912285454e-33!GO:0044249;cellular biosynthetic process;1.21437663944963e-32!GO:0005654;nucleoplasm;5.61432154811573e-32!GO:0009059;macromolecule biosynthetic process;1.36200140401947e-31!GO:0065003;macromolecular complex assembly;7.28026666572931e-31!GO:0000166;nucleotide binding;4.77734379542514e-30!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.20947336159903e-29!GO:0006886;intracellular protein transport;2.18933600594367e-28!GO:0022607;cellular component assembly;1.02517801680644e-26!GO:0044451;nucleoplasm part;3.6391294208386e-26!GO:0005681;spliceosome;2.75538090296853e-25!GO:0005740;mitochondrial envelope;4.51370098126934e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.6473011864715e-25!GO:0016070;RNA metabolic process;1.47044801337881e-24!GO:0022402;cell cycle process;1.51824292758987e-24!GO:0006974;response to DNA damage stimulus;6.21914208370304e-24!GO:0051649;establishment of cellular localization;7.43424296134739e-24!GO:0051641;cellular localization;8.14749388972659e-24!GO:0000278;mitotic cell cycle;9.20967671731899e-24!GO:0017111;nucleoside-triphosphatase activity;1.98825409781811e-23!GO:0016462;pyrophosphatase activity;2.15755482547497e-23!GO:0031966;mitochondrial membrane;2.53655763716034e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.62015405524256e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;3.87246755440539e-23!GO:0019866;organelle inner membrane;4.69937435646162e-23!GO:0032553;ribonucleotide binding;2.15851641150156e-21!GO:0032555;purine ribonucleotide binding;2.15851641150156e-21!GO:0005730;nucleolus;2.15851641150156e-21!GO:0005694;chromosome;2.45513469056189e-21!GO:0005743;mitochondrial inner membrane;3.86277267952471e-21!GO:0005524;ATP binding;6.04785567708968e-21!GO:0017076;purine nucleotide binding;1.31068401607457e-20!GO:0044445;cytosolic part;1.45936553832642e-20!GO:0032559;adenyl ribonucleotide binding;1.90886988551573e-20!GO:0006281;DNA repair;3.10617252022402e-20!GO:0006119;oxidative phosphorylation;1.29064283157283e-19!GO:0030554;adenyl nucleotide binding;2.17740981898706e-19!GO:0000087;M phase of mitotic cell cycle;5.02972123407339e-19!GO:0044455;mitochondrial membrane part;5.26049950220596e-19!GO:0016874;ligase activity;5.55216748429405e-19!GO:0006260;DNA replication;6.63906370725735e-19!GO:0051276;chromosome organization and biogenesis;6.88385948971844e-19!GO:0044427;chromosomal part;9.26592276989048e-19!GO:0007067;mitosis;9.61729372640642e-19!GO:0022403;cell cycle phase;1.32969467303836e-18!GO:0015935;small ribosomal subunit;1.48406251049137e-18!GO:0006457;protein folding;1.52718431048504e-18!GO:0008134;transcription factor binding;3.51449770251034e-18!GO:0015934;large ribosomal subunit;6.48427934929765e-18!GO:0031980;mitochondrial lumen;1.53017001003455e-17!GO:0005759;mitochondrial matrix;1.53017001003455e-17!GO:0051301;cell division;2.86080200186321e-17!GO:0022618;protein-RNA complex assembly;1.01159127216897e-16!GO:0006512;ubiquitin cycle;1.34297002290314e-16!GO:0009719;response to endogenous stimulus;2.86215423657982e-16!GO:0016887;ATPase activity;4.60994498893825e-16!GO:0042623;ATPase activity, coupled;1.67556036911008e-15!GO:0000279;M phase;4.09808858535958e-15!GO:0006325;establishment and/or maintenance of chromatin architecture;4.54503432656103e-15!GO:0012505;endomembrane system;5.68999872632845e-15!GO:0000502;proteasome complex (sensu Eukaryota);8.87251099428321e-15!GO:0006605;protein targeting;1.13916969406015e-14!GO:0043285;biopolymer catabolic process;1.16379448308385e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.27150362052567e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;1.37214863702677e-14!GO:0005746;mitochondrial respiratory chain;1.42250927314018e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;1.97470191144336e-14!GO:0000375;RNA splicing, via transesterification reactions;1.97470191144336e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.97470191144336e-14!GO:0006323;DNA packaging;2.35648231791596e-14!GO:0019941;modification-dependent protein catabolic process;2.5242198457597e-14!GO:0043632;modification-dependent macromolecule catabolic process;2.5242198457597e-14!GO:0006511;ubiquitin-dependent protein catabolic process;3.20788444681867e-14!GO:0044257;cellular protein catabolic process;3.67157220089009e-14!GO:0050136;NADH dehydrogenase (quinone) activity;4.08703503771294e-14!GO:0003954;NADH dehydrogenase activity;4.08703503771294e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.08703503771294e-14!GO:0044265;cellular macromolecule catabolic process;4.64585051622693e-14!GO:0048193;Golgi vesicle transport;6.741079200629e-14!GO:0048770;pigment granule;8.02299302447316e-14!GO:0042470;melanosome;8.02299302447316e-14!GO:0005761;mitochondrial ribosome;8.79551050883706e-14!GO:0000313;organellar ribosome;8.79551050883706e-14!GO:0016604;nuclear body;1.37338833788567e-13!GO:0051082;unfolded protein binding;1.44383876748222e-13!GO:0005783;endoplasmic reticulum;2.6113717301779e-13!GO:0004386;helicase activity;3.25954013668571e-13!GO:0008135;translation factor activity, nucleic acid binding;3.92999845608649e-13!GO:0050794;regulation of cellular process;5.14870431353253e-13!GO:0043412;biopolymer modification;5.37127142116871e-13!GO:0042254;ribosome biogenesis and assembly;5.95589057545114e-13!GO:0051186;cofactor metabolic process;7.13212340038724e-13!GO:0009057;macromolecule catabolic process;8.09555684549012e-13!GO:0006913;nucleocytoplasmic transport;8.13074108988242e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.60126344826312e-13!GO:0044248;cellular catabolic process;1.19118780003695e-12!GO:0044453;nuclear membrane part;1.49968104704189e-12!GO:0003712;transcription cofactor activity;1.8348571069682e-12!GO:0016192;vesicle-mediated transport;2.06896674521893e-12!GO:0006366;transcription from RNA polymerase II promoter;2.09424772545675e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.50207800297697e-12!GO:0051169;nuclear transport;2.96599507505658e-12!GO:0030163;protein catabolic process;3.37671135983349e-12!GO:0042775;organelle ATP synthesis coupled electron transport;4.38639471354849e-12!GO:0042773;ATP synthesis coupled electron transport;4.38639471354849e-12!GO:0005794;Golgi apparatus;4.88830784055451e-12!GO:0030964;NADH dehydrogenase complex (quinone);4.92390607078637e-12!GO:0045271;respiratory chain complex I;4.92390607078637e-12!GO:0005747;mitochondrial respiratory chain complex I;4.92390607078637e-12!GO:0008026;ATP-dependent helicase activity;6.03619384545342e-12!GO:0031965;nuclear membrane;6.43620543547781e-12!GO:0051726;regulation of cell cycle;6.51978125702513e-12!GO:0000074;regulation of progression through cell cycle;7.22730830042564e-12!GO:0005635;nuclear envelope;7.82165755564259e-12!GO:0008639;small protein conjugating enzyme activity;8.88170449068572e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.48950972626219e-11!GO:0012501;programmed cell death;2.07468468291809e-11!GO:0004842;ubiquitin-protein ligase activity;2.67950369011552e-11!GO:0044432;endoplasmic reticulum part;2.82152120613425e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.00057718973054e-11!GO:0006915;apoptosis;4.38110785010834e-11!GO:0006464;protein modification process;5.07984528123475e-11!GO:0015630;microtubule cytoskeleton;6.50337133511707e-11!GO:0000785;chromatin;7.53154151703569e-11!GO:0019787;small conjugating protein ligase activity;9.08643849849461e-11!GO:0043687;post-translational protein modification;9.15062724524315e-11!GO:0006399;tRNA metabolic process;9.30688642415796e-11!GO:0005643;nuclear pore;1.50899354011483e-10!GO:0016607;nuclear speck;1.95343070396356e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.27240776530184e-10!GO:0008219;cell death;2.91412418164184e-10!GO:0016265;death;2.91412418164184e-10!GO:0006333;chromatin assembly or disassembly;2.97909123255628e-10!GO:0003743;translation initiation factor activity;7.41989250332606e-10!GO:0006403;RNA localization;1.09112620080618e-09!GO:0050657;nucleic acid transport;1.18224753403013e-09!GO:0051236;establishment of RNA localization;1.18224753403013e-09!GO:0050658;RNA transport;1.18224753403013e-09!GO:0006732;coenzyme metabolic process;1.31922659168021e-09!GO:0043566;structure-specific DNA binding;1.90078294654367e-09!GO:0016568;chromatin modification;1.95628686065377e-09!GO:0009259;ribonucleotide metabolic process;2.20367056535997e-09!GO:0006413;translational initiation;2.30281705116195e-09!GO:0046930;pore complex;2.39139773927065e-09!GO:0050789;regulation of biological process;2.89533090082094e-09!GO:0016881;acid-amino acid ligase activity;3.27142103598781e-09!GO:0006163;purine nucleotide metabolic process;3.33972070556349e-09!GO:0006261;DNA-dependent DNA replication;4.35562395126431e-09!GO:0006446;regulation of translational initiation;4.53023692498554e-09!GO:0006364;rRNA processing;4.96257092563019e-09!GO:0065002;intracellular protein transport across a membrane;5.66560102339286e-09!GO:0006461;protein complex assembly;6.57189897766898e-09!GO:0006164;purine nucleotide biosynthetic process;6.90380880687948e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.16328045311984e-09!GO:0004812;aminoacyl-tRNA ligase activity;7.16328045311984e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.16328045311984e-09!GO:0005819;spindle;7.18076829828572e-09!GO:0065004;protein-DNA complex assembly;7.44080252080708e-09!GO:0005793;ER-Golgi intermediate compartment;9.52337627315171e-09!GO:0009260;ribonucleotide biosynthetic process;9.72028476624754e-09!GO:0009055;electron carrier activity;9.77701189352696e-09!GO:0016072;rRNA metabolic process;1.034898398551e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.04113368384851e-08!GO:0017038;protein import;1.17919211584544e-08!GO:0048523;negative regulation of cellular process;1.24844000177302e-08!GO:0000775;chromosome, pericentric region;1.44847537436129e-08!GO:0043038;amino acid activation;1.44847537436129e-08!GO:0006418;tRNA aminoacylation for protein translation;1.44847537436129e-08!GO:0043039;tRNA aminoacylation;1.44847537436129e-08!GO:0009150;purine ribonucleotide metabolic process;1.53576466582003e-08!GO:0016779;nucleotidyltransferase activity;2.29265351266367e-08!GO:0008565;protein transporter activity;2.74328787040984e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.15620963357487e-08!GO:0009152;purine ribonucleotide biosynthetic process;3.19829355570217e-08!GO:0005667;transcription factor complex;4.89226891160283e-08!GO:0019222;regulation of metabolic process;5.15082285027013e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.72965740748715e-08!GO:0032446;protein modification by small protein conjugation;5.76984176727487e-08!GO:0009199;ribonucleoside triphosphate metabolic process;6.44383751053188e-08!GO:0003697;single-stranded DNA binding;6.80898788392311e-08!GO:0051028;mRNA transport;7.90122332191174e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;8.20952297519007e-08!GO:0000245;spliceosome assembly;8.57092951440747e-08!GO:0009141;nucleoside triphosphate metabolic process;8.72544831287532e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.38812065246911e-08!GO:0009144;purine nucleoside triphosphate metabolic process;9.38812065246911e-08!GO:0009060;aerobic respiration;1.09505090039329e-07!GO:0000151;ubiquitin ligase complex;1.1344251770777e-07!GO:0016567;protein ubiquitination;1.23897463602976e-07!GO:0005813;centrosome;1.57891407831785e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.57891407831785e-07!GO:0005789;endoplasmic reticulum membrane;2.41681530967875e-07!GO:0016563;transcription activator activity;2.56370660343738e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.58425863947562e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.58425863947562e-07!GO:0003682;chromatin binding;3.05766977157435e-07!GO:0030532;small nuclear ribonucleoprotein complex;3.08257896793297e-07!GO:0005815;microtubule organizing center;3.43304604815972e-07!GO:0030120;vesicle coat;3.46341127216422e-07!GO:0030662;coated vesicle membrane;3.46341127216422e-07!GO:0019829;cation-transporting ATPase activity;3.50109518535109e-07!GO:0015986;ATP synthesis coupled proton transport;3.52726399849468e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.52726399849468e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.76399517324028e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.76399517324028e-07!GO:0048519;negative regulation of biological process;4.18543304562916e-07!GO:0015078;hydrogen ion transmembrane transporter activity;6.23319397899744e-07!GO:0007051;spindle organization and biogenesis;6.86600872387365e-07!GO:0009056;catabolic process;7.07556234991341e-07!GO:0009117;nucleotide metabolic process;7.61826706474053e-07!GO:0051188;cofactor biosynthetic process;7.62557307925039e-07!GO:0046034;ATP metabolic process;7.71463417713471e-07!GO:0008094;DNA-dependent ATPase activity;8.39457258502854e-07!GO:0006888;ER to Golgi vesicle-mediated transport;8.43796381997256e-07!GO:0003714;transcription corepressor activity;9.26102892508522e-07!GO:0051325;interphase;1.13739787747633e-06!GO:0043067;regulation of programmed cell death;1.16385188751424e-06!GO:0051246;regulation of protein metabolic process;1.21110423288342e-06!GO:0031324;negative regulation of cellular metabolic process;1.22531934662636e-06!GO:0016787;hydrolase activity;1.2397563748195e-06!GO:0031497;chromatin assembly;1.2410936917944e-06!GO:0042981;regulation of apoptosis;1.27677987173088e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.52640436788294e-06!GO:0006334;nucleosome assembly;1.64385343184603e-06!GO:0045333;cellular respiration;1.64737931682229e-06!GO:0051170;nuclear import;1.64737931682229e-06!GO:0005788;endoplasmic reticulum lumen;1.9370321311947e-06!GO:0048475;coated membrane;1.93938684514042e-06!GO:0030117;membrane coat;1.93938684514042e-06!GO:0007005;mitochondrion organization and biogenesis;2.05281852569519e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.51745002713796e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.51745002713796e-06!GO:0019899;enzyme binding;2.52125619414303e-06!GO:0005768;endosome;2.60033940836798e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.7397375502591e-06!GO:0006754;ATP biosynthetic process;2.7397375502591e-06!GO:0006753;nucleoside phosphate metabolic process;2.7397375502591e-06!GO:0006606;protein import into nucleus;3.44466311451804e-06!GO:0000075;cell cycle checkpoint;3.44623066549713e-06!GO:0051329;interphase of mitotic cell cycle;3.50742857789759e-06!GO:0003724;RNA helicase activity;3.65021408693874e-06!GO:0006099;tricarboxylic acid cycle;4.0657936089333e-06!GO:0046356;acetyl-CoA catabolic process;4.0657936089333e-06!GO:0045259;proton-transporting ATP synthase complex;4.2314100254413e-06!GO:0003899;DNA-directed RNA polymerase activity;4.49789206436753e-06!GO:0006793;phosphorus metabolic process;4.92086561307787e-06!GO:0006796;phosphate metabolic process;4.92086561307787e-06!GO:0043623;cellular protein complex assembly;5.12034137728808e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.40391387571274e-06!GO:0007010;cytoskeleton organization and biogenesis;5.75999484558936e-06!GO:0005839;proteasome core complex (sensu Eukaryota);6.16733136038325e-06!GO:0016740;transferase activity;7.85751405248701e-06!GO:0009109;coenzyme catabolic process;8.13280532579176e-06!GO:0045786;negative regulation of progression through cell cycle;9.26970764934812e-06!GO:0003713;transcription coactivator activity;1.01982018559096e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.02436378971036e-05!GO:0051427;hormone receptor binding;1.05281614979983e-05!GO:0006084;acetyl-CoA metabolic process;1.12810275931342e-05!GO:0016564;transcription repressor activity;1.14990167200702e-05!GO:0006752;group transfer coenzyme metabolic process;1.15416956461241e-05!GO:0051187;cofactor catabolic process;1.18476738672301e-05!GO:0031252;leading edge;1.37289859600587e-05!GO:0016481;negative regulation of transcription;1.42228234558979e-05!GO:0009892;negative regulation of metabolic process;1.43294889736848e-05!GO:0031323;regulation of cellular metabolic process;1.46775873432264e-05!GO:0051168;nuclear export;1.47068135457841e-05!GO:0065007;biological regulation;1.63080658179855e-05!GO:0003924;GTPase activity;1.652025001519e-05!GO:0003684;damaged DNA binding;1.69687677676706e-05!GO:0003690;double-stranded DNA binding;2.07429064824184e-05!GO:0005762;mitochondrial large ribosomal subunit;2.27536812385316e-05!GO:0000315;organellar large ribosomal subunit;2.27536812385316e-05!GO:0035257;nuclear hormone receptor binding;2.30776257001619e-05!GO:0005657;replication fork;2.30892859496194e-05!GO:0009108;coenzyme biosynthetic process;2.40529821957385e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.5244482753234e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.6735363875399e-05!GO:0004298;threonine endopeptidase activity;3.54179014018857e-05!GO:0000314;organellar small ribosomal subunit;3.88596122282113e-05!GO:0005763;mitochondrial small ribosomal subunit;3.88596122282113e-05!GO:0043069;negative regulation of programmed cell death;3.899780936792e-05!GO:0006350;transcription;4.02928740180321e-05!GO:0016310;phosphorylation;4.71857435032659e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.52131016945337e-05!GO:0006383;transcription from RNA polymerase III promoter;5.71920599110857e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.987099668245e-05!GO:0043066;negative regulation of apoptosis;6.46082550407188e-05!GO:0006613;cotranslational protein targeting to membrane;7.20276895065476e-05!GO:0005874;microtubule;7.39011982882389e-05!GO:0000776;kinetochore;8.73496182713761e-05!GO:0006916;anti-apoptosis;9.42709067002272e-05!GO:0005798;Golgi-associated vesicle;9.71813016552883e-05!GO:0008186;RNA-dependent ATPase activity;9.82145355319229e-05!GO:0016491;oxidoreductase activity;9.91375987847909e-05!GO:0006302;double-strand break repair;0.000122891108560311!GO:0003729;mRNA binding;0.000164279219555283!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000167090213980451!GO:0048522;positive regulation of cellular process;0.000190958186313929!GO:0045454;cell redox homeostasis;0.000201949503699607!GO:0006284;base-excision repair;0.00024511867300118!GO:0042802;identical protein binding;0.000253606440269844!GO:0005770;late endosome;0.00025584154563454!GO:0043021;ribonucleoprotein binding;0.000257051134189256!GO:0003678;DNA helicase activity;0.000265397479877614!GO:0031988;membrane-bound vesicle;0.000265397479877614!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000267722219484473!GO:0016023;cytoplasmic membrane-bound vesicle;0.000274944643338018!GO:0051789;response to protein stimulus;0.000274944643338018!GO:0006986;response to unfolded protein;0.000274944643338018!GO:0006310;DNA recombination;0.000280617489499482!GO:0016853;isomerase activity;0.000280640860028979!GO:0008092;cytoskeletal protein binding;0.000284104322793251!GO:0009165;nucleotide biosynthetic process;0.000285556706913549!GO:0044431;Golgi apparatus part;0.000285854674041902!GO:0044440;endosomal part;0.000293818842794474!GO:0010008;endosome membrane;0.000293818842794474!GO:0004004;ATP-dependent RNA helicase activity;0.000294642382699146!GO:0030867;rough endoplasmic reticulum membrane;0.000296558893216223!GO:0010468;regulation of gene expression;0.000318423735703308!GO:0005905;coated pit;0.000325018762292285!GO:0005769;early endosome;0.000347912805480819!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000354914237309418!GO:0005048;signal sequence binding;0.00036794495293371!GO:0016363;nuclear matrix;0.000397071867750142!GO:0007059;chromosome segregation;0.000407566279101765!GO:0016197;endosome transport;0.000413139805215214!GO:0016859;cis-trans isomerase activity;0.00044484223916383!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000450801148024382!GO:0030036;actin cytoskeleton organization and biogenesis;0.000457910411746204!GO:0051052;regulation of DNA metabolic process;0.000497035257993025!GO:0051252;regulation of RNA metabolic process;0.000538566772310297!GO:0044452;nucleolar part;0.000554276592337833!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000606236903703407!GO:0007052;mitotic spindle organization and biogenesis;0.000607227907206452!GO:0005885;Arp2/3 protein complex;0.000612854882183111!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000625469225798305!GO:0032508;DNA duplex unwinding;0.000665586012889467!GO:0032392;DNA geometric change;0.000665586012889467!GO:0008022;protein C-terminus binding;0.000666585886812892!GO:0031968;organelle outer membrane;0.000754598938233155!GO:0031072;heat shock protein binding;0.000783752901122355!GO:0006091;generation of precursor metabolites and energy;0.000789952537676507!GO:0016126;sterol biosynthetic process;0.000803093331920885!GO:0019867;outer membrane;0.000822484087805943!GO:0008361;regulation of cell size;0.000832566829733974!GO:0008033;tRNA processing;0.000909742496293432!GO:0000059;protein import into nucleus, docking;0.000941416547569055!GO:0006289;nucleotide-excision repair;0.000985868367877357!GO:0007243;protein kinase cascade;0.00100218380541032!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00101393992914832!GO:0015399;primary active transmembrane transporter activity;0.00101393992914832!GO:0006402;mRNA catabolic process;0.00103284191268768!GO:0030880;RNA polymerase complex;0.00104478384532513!GO:0007088;regulation of mitosis;0.00104488602427681!GO:0016049;cell growth;0.00106232345352193!GO:0031982;vesicle;0.00108001817395815!GO:0008654;phospholipid biosynthetic process;0.00111461525225035!GO:0043681;protein import into mitochondrion;0.0011292542637288!GO:0048471;perinuclear region of cytoplasm;0.00113834683557385!GO:0035258;steroid hormone receptor binding;0.00117766694444938!GO:0030132;clathrin coat of coated pit;0.00118213564905714!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0011934940836661!GO:0006839;mitochondrial transport;0.00122369999317996!GO:0015980;energy derivation by oxidation of organic compounds;0.0012242161666872!GO:0008139;nuclear localization sequence binding;0.00131643088630668!GO:0051287;NAD binding;0.00133769660768585!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00137192395690346!GO:0031410;cytoplasmic vesicle;0.00137777265512448!GO:0045941;positive regulation of transcription;0.00138539657349085!GO:0006268;DNA unwinding during replication;0.0014839316083521!GO:0005525;GTP binding;0.00150294867645421!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00152526303243689!GO:0006626;protein targeting to mitochondrion;0.00154552175325574!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00154552175325574!GO:0007093;mitotic cell cycle checkpoint;0.00154552175325574!GO:0045892;negative regulation of transcription, DNA-dependent;0.00172811782651709!GO:0000792;heterochromatin;0.00177624699956211!GO:0032774;RNA biosynthetic process;0.00184544411553037!GO:0043284;biopolymer biosynthetic process;0.00190552818517152!GO:0005791;rough endoplasmic reticulum;0.0019439404536594!GO:0046483;heterocycle metabolic process;0.0019982358235647!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00206875975462479!GO:0045893;positive regulation of transcription, DNA-dependent;0.00211422053700267!GO:0004674;protein serine/threonine kinase activity;0.00212146195725757!GO:0005876;spindle microtubule;0.00214646852851478!GO:0005741;mitochondrial outer membrane;0.00217124142613843!GO:0001558;regulation of cell growth;0.00220748294736924!GO:0006351;transcription, DNA-dependent;0.00220748294736924!GO:0006414;translational elongation;0.00221390426272788!GO:0008168;methyltransferase activity;0.00232745147637259!GO:0006611;protein export from nucleus;0.00236967208315514!GO:0007017;microtubule-based process;0.00244008909860316!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00246748161992123!GO:0000428;DNA-directed RNA polymerase complex;0.00246748161992123!GO:0030663;COPI coated vesicle membrane;0.00246748161992123!GO:0030126;COPI vesicle coat;0.00246748161992123!GO:0016741;transferase activity, transferring one-carbon groups;0.00248239976855667!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00262371282569434!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00262371282569434!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00262371282569434!GO:0006405;RNA export from nucleus;0.00274606902899738!GO:0003711;transcription elongation regulator activity;0.00282083168762865!GO:0008250;oligosaccharyl transferase complex;0.00282083168762865!GO:0005684;U2-dependent spliceosome;0.00284244261405113!GO:0006612;protein targeting to membrane;0.00284844313763104!GO:0030029;actin filament-based process;0.00285223524313752!GO:0030133;transport vesicle;0.00290664458082132!GO:0006695;cholesterol biosynthetic process;0.00296555796738121!GO:0006270;DNA replication initiation;0.00301364692966!GO:0065009;regulation of a molecular function;0.00302782128790148!GO:0000082;G1/S transition of mitotic cell cycle;0.00311003254573449!GO:0019206;nucleoside kinase activity;0.00315212818631974!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00318707606967207!GO:0017166;vinculin binding;0.00321538001996096!GO:0000139;Golgi membrane;0.00321538001996096!GO:0032200;telomere organization and biogenesis;0.00322094433217772!GO:0000723;telomere maintenance;0.00322094433217772!GO:0006401;RNA catabolic process;0.00327021407020637!GO:0030137;COPI-coated vesicle;0.00333923945066739!GO:0016272;prefoldin complex;0.00350071832488165!GO:0006892;post-Golgi vesicle-mediated transport;0.00350071832488165!GO:0030521;androgen receptor signaling pathway;0.00350071832488165!GO:0016044;membrane organization and biogenesis;0.00355693099904441!GO:0030658;transport vesicle membrane;0.00356801240599482!GO:0006352;transcription initiation;0.00358162754582108!GO:0000049;tRNA binding;0.00359207815858106!GO:0005096;GTPase activator activity;0.00363193864456895!GO:0033116;ER-Golgi intermediate compartment membrane;0.00382741765540998!GO:0019843;rRNA binding;0.00393154854747397!GO:0051087;chaperone binding;0.00399435002322097!GO:0008047;enzyme activator activity;0.00410101514834896!GO:0033673;negative regulation of kinase activity;0.00417234956141751!GO:0006469;negative regulation of protein kinase activity;0.00417234956141751!GO:0003702;RNA polymerase II transcription factor activity;0.00418528647087292!GO:0043492;ATPase activity, coupled to movement of substances;0.00423342446024812!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00431693563607567!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00431693563607567!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00449398620673583!GO:0006950;response to stress;0.00450806224460169!GO:0009116;nucleoside metabolic process;0.00454111614363459!GO:0047485;protein N-terminus binding;0.00455990679382866!GO:0030027;lamellipodium;0.0045685027887709!GO:0006338;chromatin remodeling;0.00478165218145277!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00505771201485498!GO:0045449;regulation of transcription;0.0051039119084088!GO:0001726;ruffle;0.00538580492845911!GO:0004003;ATP-dependent DNA helicase activity;0.00541719407034841!GO:0032561;guanyl ribonucleotide binding;0.00541719407034841!GO:0019001;guanyl nucleotide binding;0.00541719407034841!GO:0018196;peptidyl-asparagine modification;0.00549937494847583!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00549937494847583!GO:0004576;oligosaccharyl transferase activity;0.00569273688897952!GO:0004527;exonuclease activity;0.0057440741141265!GO:0051348;negative regulation of transferase activity;0.00577354059745658!GO:0030134;ER to Golgi transport vesicle;0.00579493376660978!GO:0006818;hydrogen transport;0.00602414576389159!GO:0006891;intra-Golgi vesicle-mediated transport;0.00617161959096395!GO:0046983;protein dimerization activity;0.00619874596370255!GO:0040029;regulation of gene expression, epigenetic;0.00630026295614505!GO:0048487;beta-tubulin binding;0.00636509514137892!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00642406569330835!GO:0000786;nucleosome;0.00644805387852172!GO:0048500;signal recognition particle;0.00649277988086946!GO:0006275;regulation of DNA replication;0.00651196756533786!GO:0006220;pyrimidine nucleotide metabolic process;0.00663578765161146!GO:0050681;androgen receptor binding;0.00663578765161146!GO:0043488;regulation of mRNA stability;0.00663819393287091!GO:0043487;regulation of RNA stability;0.00663819393287091!GO:0030660;Golgi-associated vesicle membrane;0.00665368522777468!GO:0009112;nucleobase metabolic process;0.00669513600490545!GO:0007264;small GTPase mediated signal transduction;0.00669513600490545!GO:0015992;proton transport;0.00680508378863087!GO:0000922;spindle pole;0.00695890798810381!GO:0030127;COPII vesicle coat;0.00695890798810381!GO:0012507;ER to Golgi transport vesicle membrane;0.00695890798810381!GO:0031124;mRNA 3'-end processing;0.00718283433210378!GO:0005637;nuclear inner membrane;0.00721964126419339!GO:0016125;sterol metabolic process;0.00731183724303367!GO:0007006;mitochondrial membrane organization and biogenesis;0.00740617542186621!GO:0007030;Golgi organization and biogenesis;0.007493576999563!GO:0003746;translation elongation factor activity;0.00770826605411016!GO:0051540;metal cluster binding;0.00770826605411016!GO:0051536;iron-sulfur cluster binding;0.00770826605411016!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.00771908032634534!GO:0005862;muscle thin filament tropomyosin;0.00797555584035898!GO:0007265;Ras protein signal transduction;0.00812839166197402!GO:0031570;DNA integrity checkpoint;0.00825989348887389!GO:0015631;tubulin binding;0.00834003430121795!GO:0030518;steroid hormone receptor signaling pathway;0.0086977269754427!GO:0022890;inorganic cation transmembrane transporter activity;0.00886002256399626!GO:0008287;protein serine/threonine phosphatase complex;0.00886380272209562!GO:0048518;positive regulation of biological process;0.00890904727398147!GO:0000781;chromosome, telomeric region;0.00892246670619555!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00948898625504226!GO:0031529;ruffle organization and biogenesis;0.0099997058088411!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0099997058088411!GO:0015002;heme-copper terminal oxidase activity;0.0099997058088411!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0099997058088411!GO:0004129;cytochrome-c oxidase activity;0.0099997058088411!GO:0016584;nucleosome positioning;0.0099997058088411!GO:0043624;cellular protein complex disassembly;0.010136410818142!GO:0043596;nuclear replication fork;0.0102813619791307!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0104084572460034!GO:0005083;small GTPase regulator activity;0.0106510257518126!GO:0003677;DNA binding;0.0109667092047764!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0111494842625182!GO:0040008;regulation of growth;0.0113913974578068!GO:0042770;DNA damage response, signal transduction;0.0116297041083948!GO:0043414;biopolymer methylation;0.0118072560469014!GO:0030118;clathrin coat;0.0127537435682289!GO:0008632;apoptotic program;0.0127904885973599!GO:0046474;glycerophospholipid biosynthetic process;0.0138766737366244!GO:0045045;secretory pathway;0.0145574833389876!GO:0051539;4 iron, 4 sulfur cluster binding;0.0146617737775674!GO:0043022;ribosome binding;0.0147482007978034!GO:0000725;recombinational repair;0.0153292657812323!GO:0000724;double-strand break repair via homologous recombination;0.0153292657812323!GO:0050662;coenzyme binding;0.0155002416414817!GO:0031123;RNA 3'-end processing;0.0155148629695819!GO:0005856;cytoskeleton;0.0155148629695819!GO:0005099;Ras GTPase activator activity;0.0156394363148593!GO:0007021;tubulin folding;0.0156766249191424!GO:0006144;purine base metabolic process;0.0161991509154023!GO:0048468;cell development;0.0162048888554464!GO:0008601;protein phosphatase type 2A regulator activity;0.0163815552933374!GO:0030496;midbody;0.0164236360388353!GO:0009081;branched chain family amino acid metabolic process;0.0167048314523356!GO:0030659;cytoplasmic vesicle membrane;0.0168061524047386!GO:0005773;vacuole;0.0168422517795539!GO:0022415;viral reproductive process;0.0168763511774664!GO:0000910;cytokinesis;0.0174144248103442!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0183327105453378!GO:0000287;magnesium ion binding;0.0187271436892721!GO:0008312;7S RNA binding;0.0187915141364498!GO:0043407;negative regulation of MAP kinase activity;0.0189084222123547!GO:0016251;general RNA polymerase II transcription factor activity;0.0189337154914036!GO:0043189;H4/H2A histone acetyltransferase complex;0.0190155799785015!GO:0050790;regulation of catalytic activity;0.0194663065137658!GO:0031901;early endosome membrane;0.0194959702397147!GO:0006354;RNA elongation;0.0195012877452681!GO:0006509;membrane protein ectodomain proteolysis;0.0195461588411206!GO:0033619;membrane protein proteolysis;0.0195461588411206!GO:0031625;ubiquitin protein ligase binding;0.0195461588411206!GO:0005832;chaperonin-containing T-complex;0.0197107874421229!GO:0016408;C-acyltransferase activity;0.0200133392219315!GO:0044433;cytoplasmic vesicle part;0.0201410498970518!GO:0004177;aminopeptidase activity;0.0203064953072998!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0203285071195898!GO:0045047;protein targeting to ER;0.0203285071195898!GO:0000159;protein phosphatase type 2A complex;0.0203285071195898!GO:0004518;nuclease activity;0.0203896305617095!GO:0000339;RNA cap binding;0.0214854158639707!GO:0032984;macromolecular complex disassembly;0.0218311803067392!GO:0005869;dynactin complex;0.0223457069891078!GO:0032259;methylation;0.0230079026961299!GO:0000152;nuclear ubiquitin ligase complex;0.0230323709316937!GO:0008629;induction of apoptosis by intracellular signals;0.0230394086692975!GO:0050750;low-density lipoprotein receptor binding;0.0233166004108583!GO:0000070;mitotic sister chromatid segregation;0.0234928282335321!GO:0043065;positive regulation of apoptosis;0.0237308863557637!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0239323133877201!GO:0030522;intracellular receptor-mediated signaling pathway;0.0240222432866106!GO:0008243;plasminogen activator activity;0.0243801463490068!GO:0016301;kinase activity;0.0247129730732031!GO:0008180;signalosome;0.0247129730732031!GO:0030032;lamellipodium biogenesis;0.0247732604851236!GO:0005938;cell cortex;0.0250871659323735!GO:0003779;actin binding;0.0253649976322612!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0253951041011323!GO:0043241;protein complex disassembly;0.0253951041011323!GO:0030125;clathrin vesicle coat;0.0254857037559717!GO:0030665;clathrin coated vesicle membrane;0.0254857037559717!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0256427874573726!GO:0006595;polyamine metabolic process;0.0257071613231893!GO:0030119;AP-type membrane coat adaptor complex;0.0257071613231893!GO:0051320;S phase;0.0260730063286991!GO:0006376;mRNA splice site selection;0.0260730063286991!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0260730063286991!GO:0043068;positive regulation of programmed cell death;0.0265060935888786!GO:0000819;sister chromatid segregation;0.0268349426741158!GO:0000077;DNA damage checkpoint;0.0269937393535098!GO:0000118;histone deacetylase complex;0.0271963511566976!GO:0000209;protein polyubiquitination;0.027396462063252!GO:0007004;telomere maintenance via telomerase;0.0278189972743782!GO:0030695;GTPase regulator activity;0.0280507932245006!GO:0005100;Rho GTPase activator activity;0.0280995114714605!GO:0016585;chromatin remodeling complex;0.0281153574686551!GO:0019752;carboxylic acid metabolic process;0.0281954129700366!GO:0043130;ubiquitin binding;0.0281954129700366!GO:0032182;small conjugating protein binding;0.0281954129700366!GO:0042769;DNA damage response, detection of DNA damage;0.0285098734010387!GO:0030911;TPR domain binding;0.0285974587027711!GO:0009262;deoxyribonucleotide metabolic process;0.0286964875008512!GO:0001832;blastocyst growth;0.0291171534369704!GO:0007346;regulation of progression through mitotic cell cycle;0.0295731759467721!GO:0009303;rRNA transcription;0.0297802828833979!GO:0035035;histone acetyltransferase binding;0.0308079264414135!GO:0035267;NuA4 histone acetyltransferase complex;0.0308079264414135!GO:0030176;integral to endoplasmic reticulum membrane;0.0308358451503038!GO:0016407;acetyltransferase activity;0.0316005646341904!GO:0000228;nuclear chromosome;0.0316005646341904!GO:0030131;clathrin adaptor complex;0.0316074236428414!GO:0006082;organic acid metabolic process;0.0317538540961544!GO:0006355;regulation of transcription, DNA-dependent;0.0319219280886416!GO:0012506;vesicle membrane;0.0319219280886416!GO:0006607;NLS-bearing substrate import into nucleus;0.0327456420919529!GO:0051098;regulation of binding;0.0332121327589133!GO:0051101;regulation of DNA binding;0.0332121327589133!GO:0033559;unsaturated fatty acid metabolic process;0.0332926368829621!GO:0006636;unsaturated fatty acid biosynthetic process;0.0332926368829621!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0338427223309348!GO:0046966;thyroid hormone receptor binding;0.0338427223309348!GO:0016791;phosphoric monoester hydrolase activity;0.0338427223309348!GO:0006378;mRNA polyadenylation;0.0338427223309348!GO:0051128;regulation of cellular component organization and biogenesis;0.0338427223309348!GO:0006360;transcription from RNA polymerase I promoter;0.0341200687810452!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0341200687810452!GO:0009967;positive regulation of signal transduction;0.0343323737910283!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0343323737910283!GO:0008538;proteasome activator activity;0.0349969717502825!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0356164191271289!GO:0031371;ubiquitin conjugating enzyme complex;0.0363927770698678!GO:0009893;positive regulation of metabolic process;0.0364366502757725!GO:0000323;lytic vacuole;0.0371207429129464!GO:0005764;lysosome;0.0371207429129464!GO:0006520;amino acid metabolic process;0.0371309351759388!GO:0005669;transcription factor TFIID complex;0.0373344173709795!GO:0016311;dephosphorylation;0.0375312389059672!GO:0000123;histone acetyltransferase complex;0.0375312389059672!GO:0008203;cholesterol metabolic process;0.0378966334686076!GO:0008610;lipid biosynthetic process;0.0387703956589513!GO:0050178;phenylpyruvate tautomerase activity;0.0391720849888134!GO:0003887;DNA-directed DNA polymerase activity;0.0392219518250439!GO:0030128;clathrin coat of endocytic vesicle;0.0393659264926467!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0393659264926467!GO:0030122;AP-2 adaptor complex;0.0393659264926467!GO:0006740;NADPH regeneration;0.0395326417670267!GO:0006098;pentose-phosphate shunt;0.0395326417670267!GO:0007050;cell cycle arrest;0.0395411249920639!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0399765062339651!GO:0043601;nuclear replisome;0.0400763417476796!GO:0030894;replisome;0.0400763417476796!GO:0005784;translocon complex;0.0402518975797709!GO:0046489;phosphoinositide biosynthetic process;0.04054572980576!GO:0032906;transforming growth factor-beta2 production;0.041677788847377!GO:0032909;regulation of transforming growth factor-beta2 production;0.041677788847377!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.041677788847377!GO:0006672;ceramide metabolic process;0.0423972746176078!GO:0004239;methionyl aminopeptidase activity;0.0424012722811723!GO:0006778;porphyrin metabolic process;0.0428679811561572!GO:0033013;tetrapyrrole metabolic process;0.0428679811561572!GO:0006308;DNA catabolic process;0.0428884524765896!GO:0043087;regulation of GTPase activity;0.0431222749679758!GO:0006650;glycerophospholipid metabolic process;0.0437056325061575!GO:0022411;cellular component disassembly;0.0437056325061575!GO:0043086;negative regulation of catalytic activity;0.0437056325061575!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0443038622685038!GO:0042393;histone binding;0.0454160997083822!GO:0044262;cellular carbohydrate metabolic process;0.0454474106939114!GO:0030508;thiol-disulfide exchange intermediate activity;0.046071688861466!GO:0004722;protein serine/threonine phosphatase activity;0.0461098896569579!GO:0008017;microtubule binding;0.0465580460803083!GO:0006406;mRNA export from nucleus;0.0477916032604888!GO:0004523;ribonuclease H activity;0.0478164091505235!GO:0045334;clathrin-coated endocytic vesicle;0.0482495466513217!GO:0017134;fibroblast growth factor binding;0.0482495466513217!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0491328797600257!GO:0005875;microtubule associated complex;0.0492729210972628!GO:0044450;microtubule organizing center part;0.0495129351667407!GO:0006779;porphyrin biosynthetic process;0.0496683828341306!GO:0033014;tetrapyrrole biosynthetic process;0.0496683828341306!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0497572722335554!GO:0046519;sphingoid metabolic process;0.049994415254732!GO:0031577;spindle checkpoint;0.049994415254732
 +
|sample_id=10600
 +
|sample_note=
 +
|sample_sex=female
 +
|sample_species=Human (Homo sapiens)
 +
|sample_strain=
 +
|sample_tissue=ANATOMICAL SYSTEM
 +
|top_motifs=HOXA9_MEIS1:1.13805049519;TFDP1:1.08349565025;VSX1,2:1.05043299501;GFI1:0.915120739548;NR3C1:0.9057280311;E2F1..5:0.887857579673;STAT5{A,B}:0.877274992858;PPARG:0.871180123358;TEAD1:0.797764593599;PAX3,7:0.761988886589;ADNP_IRX_SIX_ZHX:0.744215423929;PBX1:0.740570106435;FOX{I1,J2}:0.732821019813;ONECUT1,2:0.722795452982;PAX6:0.718015437731;ZNF143:0.696228547775;ZNF384:0.682946144759;POU1F1:0.635643451646;POU3F1..4:0.604168440162;HMGA1,2:0.576823776311;GLI1..3:0.573780286151;POU5F1:0.56234782179;AIRE:0.520380582754;NFY{A,B,C}:0.519178122901;LEF1_TCF7_TCF7L1,2:0.501757927488;HOX{A5,B5}:0.49956643703;SOX17:0.483566999182;TAL1_TCF{3,4,12}:0.478770819126;MYB:0.466418269187;GATA4:0.443430831695;FOXD3:0.429888020222;NKX2-3_NKX2-5:0.424433593545;EN1,2:0.418035442352;HMX1:0.405583154039;MZF1:0.397800615422;SRF:0.390460340065;LHX3,4:0.388375191409;ZNF148:0.359631491863;PAX8:0.350905613036;GTF2A1,2:0.340007969752;PITX1..3:0.338558069933;RORA:0.333848212987;NKX6-1,2:0.314944109462;BREu{core}:0.310308130001;FOS_FOS{B,L1}_JUN{B,D}:0.306478539732;IKZF2:0.291483465475;MAZ:0.287161580799;TFAP2B:0.285504865816;EGR1..3:0.259600925206;MED-1{core}:0.240018878915;FOXA2:0.223989099921;OCT4_SOX2{dimer}:0.219530444073;GTF2I:0.211888979073;NRF1:0.211169471223;HOX{A4,D4}:0.199031084444;CUX2:0.197884589731;GFI1B:0.185014346387;ELK1,4_GABP{A,B1}:0.170697613958;PRDM1:0.156907850206;NFATC1..3:0.156206968742;POU6F1:0.137249750734;BACH2:0.136296821041;NANOG:0.133545697362;GCM1,2:0.131564684814;AHR_ARNT_ARNT2:0.119093599893;NFE2:0.114716699055;SOX5:0.111132039438;MAFB:0.108851142085;PAX1,9:0.100223527273;POU2F1..3:0.0997615777777;NR6A1:0.0887382293025;TLX1..3_NFIC{dimer}:0.0846955207243;HLF:0.080371073168;PRRX1,2:0.0551385292427;ZBTB16:0.0509906078151;CRX:0.0490769701155;TFAP4:0.0437859384286;FOSL2:0.0248533074365;NFE2L1:0.024571046635;FOXQ1:0.0240884349836;SOX{8,9,10}:0.0223270709647;HSF1,2:0.0204414784146;ZFP161:0.0199805071182;bHLH_family:0.0194865484358;HIC1:0.0193684737431;GZF1:-0.00221449699342;GATA6:-0.0287203640972;TP53:-0.033071224261;DBP:-0.0331147206143;SP1:-0.0437081992571;CEBPA,B_DDIT3:-0.050723324408;MYBL2:-0.0536834897172;MTF1:-0.0709687307452;FOXO1,3,4:-0.071810892101;SPZ1:-0.0934595635508;HNF1A:-0.097618496925;NFE2L2:-0.0993585835902;TFAP2{A,C}:-0.100535597549;ZBTB6:-0.104665645895;EVI1:-0.113851137083;RBPJ:-0.11452826119;IRF1,2:-0.123999862875;ALX4:-0.12495480966;IRF7:-0.130359372907;KLF4:-0.134016172059;EP300:-0.146825619249;RFX1:-0.156322984028;STAT1,3:-0.163004155383;MEF2{A,B,C,D}:-0.170143985398;BPTF:-0.171464672495;RFX2..5_RFXANK_RFXAP:-0.180630598947;FOXM1:-0.186089624544;YY1:-0.188794591023;ATF2:-0.197969168039;FOX{D1,D2}:-0.213584840653;HNF4A_NR2F1,2:-0.217143721992;TEF:-0.222843408554;AR:-0.223366468236;RXRA_VDR{dimer}:-0.232289124872;MYFfamily:-0.23304696083;ALX1:-0.236640269995;HBP1_HMGB_SSRP1_UBTF:-0.239171054144;NR1H4:-0.252161050725;XBP1:-0.257534831197;PAX5:-0.273997068906;ARID5B:-0.280742517553;PAX2:-0.280873620884;ZIC1..3:-0.285330856984;MTE{core}:-0.286565043765;UFEwm:-0.288349904111;NKX3-1:-0.300832574018;FOXP1:-0.310550039272;DMAP1_NCOR{1,2}_SMARC:-0.314338081704;CREB1:-0.325892007987;FOX{F1,F2,J1}:-0.328022572845;XCPE1{core}:-0.328721241313;ATF5_CREB3:-0.351082667607;NFIX:-0.358119374589;NANOG{mouse}:-0.364804104927;REST:-0.367847728265;EBF1:-0.367999545443;CDX1,2,4:-0.371432636141;STAT2,4,6:-0.378209763298;NFKB1_REL_RELA:-0.393753569646;NKX3-2:-0.40887298605;FOXL1:-0.412704418202;NHLH1,2:-0.425484716495;TBX4,5:-0.431448547197;ATF4:-0.43322058768;NKX2-2,8:-0.433319848896;SPIB:-0.436871533307;RUNX1..3:-0.440427705418;IKZF1:-0.442068321598;TFCP2:-0.444784471423;SNAI1..3:-0.448310288609;RXR{A,B,G}:-0.463608590718;ESR1:-0.479994528905;PATZ1:-0.4891236538;PDX1:-0.490557544661;RREB1:-0.4961823607;PAX4:-0.526383344109;SOX2:-0.536705831249;ESRRA:-0.549327635587;HES1:-0.565538064025;ELF1,2,4:-0.579960871259;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.583748002882;SPI1:-0.603493579606;NR5A1,2:-0.607854950595;TOPORS:-0.608649639745;ZNF238:-0.611761223569;ETS1,2:-0.614396556724;LMO2:-0.616685277712;HOX{A6,A7,B6,B7}:-0.621799013848;NFIL3:-0.629982957007;SREBF1,2:-0.647842304671;JUN:-0.660048726453;CDC5L:-0.683209316185;ZEB1:-0.725128401023;FOXP3:-0.741752769838;ZNF423:-0.75832170092;TBP:-0.759583487336;MYOD1:-0.781581108895;NKX2-1,4:-0.821866251039;TGIF1:-0.837233765787;HAND1,2:-0.870553574004;FOXN1:-0.892965559435;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.05379827979;SMAD1..7,9:-1.21866212585;TLX2:-1.40554917555;T:-1.52149841351;HIF1A:-1.59232263004;ATF6:-1.60132946547
 +
|xref=
 
}}
 
}}

Latest revision as of 10:31, 10 August 2017

Name:myxofibrosarcoma cell line:MFH-ino
Species:Human (Homo sapiens)
Library ID:CNhs11729
Sample type:cell lines
Genomic View: UCSC
MicroRNAs:Including candidate novel miRNAs(CAGE samples)
Excluding candidate novel miRNAs(CAGE samples)
RefEX:Specific genes
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueANATOMICAL SYSTEM
dev stageNA
sexfemale
ageunknown
cell typefibroblast
cell lineMFH-ino
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

Accession numbers
MethodSample accession id
CAGE  SAMD00004833
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11729 CAGE DRX007958 DRR008830
Accession ID Hg19

Library idBAMCTSS
CNhs11729 DRZ000255 DRZ001640
Accession ID Hg38

Library idBAMCTSS
CNhs11729 DRZ011605 DRZ012990
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis--0.0439
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.46
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.195
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-8.558604e-4
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19--0.0502
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0483
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0346
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0957
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.357
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8--0.0574
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth--0.0663
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.423
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.147
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11729

Jaspar motif P-value
MA0002.2 0.546
MA0003.1 0.0778
MA0004.1 0.505
MA0006.1 0.857
MA0007.1 0.914
MA0009.1 0.0355
MA0014.1 0.881
MA0017.1 0.305
MA0018.2 0.181
MA0019.1 0.132
MA0024.1 1.25114e-6
MA0025.1 0.16
MA0027.1 0.732
MA0028.1 0.763
MA0029.1 0.0948
MA0030.1 0.958
MA0031.1 0.597
MA0035.2 0.894
MA0038.1 0.00926
MA0039.2 0.911
MA0040.1 0.968
MA0041.1 0.31
MA0042.1 0.192
MA0043.1 0.0107
MA0046.1 0.986
MA0047.2 0.691
MA0048.1 0.0187
MA0050.1 0.755
MA0051.1 0.431
MA0052.1 0.0807
MA0055.1 0.227
MA0057.1 0.524
MA0058.1 0.0873
MA0059.1 0.506
MA0060.1 1.22086e-9
MA0061.1 8.85966e-4
MA0062.2 0.0408
MA0065.2 0.09
MA0066.1 0.856
MA0067.1 0.447
MA0068.1 0.0287
MA0069.1 0.647
MA0070.1 0.0495
MA0071.1 0.587
MA0072.1 0.656
MA0073.1 0.323
MA0074.1 0.262
MA0076.1 0.686
MA0077.1 0.266
MA0078.1 0.82
MA0079.2 0.622
MA0080.2 1.67718e-9
MA0081.1 0.00424
MA0083.1 0.109
MA0084.1 0.836
MA0087.1 0.712
MA0088.1 0.0156
MA0090.1 7.72903e-6
MA0091.1 0.667
MA0092.1 0.975
MA0093.1 0.499
MA0099.2 7.275e-8
MA0100.1 0.588
MA0101.1 0.143
MA0102.2 0.00251
MA0103.1 0.00293
MA0104.2 0.492
MA0105.1 5.99065e-4
MA0106.1 0.669
MA0107.1 0.0292
MA0108.2 0.11
MA0111.1 0.923
MA0112.2 0.0698
MA0113.1 0.979
MA0114.1 0.589
MA0115.1 0.727
MA0116.1 0.0474
MA0117.1 0.823
MA0119.1 0.446
MA0122.1 0.917
MA0124.1 0.632
MA0125.1 0.0989
MA0131.1 0.29
MA0135.1 0.694
MA0136.1 6.99984e-10
MA0137.2 0.135
MA0138.2 0.0414
MA0139.1 0.522
MA0140.1 0.275
MA0141.1 0.0414
MA0142.1 0.105
MA0143.1 0.904
MA0144.1 0.956
MA0145.1 0.265
MA0146.1 0.778
MA0147.1 0.811
MA0148.1 0.596
MA0149.1 0.509
MA0150.1 0.889
MA0152.1 0.479
MA0153.1 0.913
MA0154.1 0.00863
MA0155.1 0.105
MA0156.1 0.00194
MA0157.1 0.682
MA0159.1 0.00388
MA0160.1 0.79
MA0162.1 0.943
MA0163.1 0.0023
MA0164.1 0.629
MA0258.1 0.023
MA0259.1 0.491



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11729

Novel motif P-value
1 0.883
10 0.296
100 0.96
101 0.362
102 0.317
103 0.458
104 0.967
105 0.51
106 0.0567
107 0.318
108 0.371
109 0.184
11 0.176
110 0.386
111 0.945
112 0.218
113 0.324
114 0.395
115 0.436
116 0.871
117 0.235
118 0.574
119 0.442
12 0.0439
120 0.104
121 0.939
122 0.582
123 0.243
124 0.687
125 0.244
126 0.154
127 0.425
128 0.277
129 0.71
13 0.212
130 0.084
131 0.523
132 0.487
133 0.841
134 0.95
135 0.0203
136 0.837
137 0.147
138 0.797
139 0.0132
14 0.323
140 0.211
141 0.344
142 0.302
143 0.463
144 0.316
145 0.804
146 0.314
147 0.4
148 0.00808
149 0.0252
15 0.983
150 0.559
151 0.353
152 0.408
153 0.159
154 0.494
155 0.0854
156 0.687
157 0.677
158 0.0832
159 0.618
16 0.653
160 0.947
161 0.206
162 0.598
163 0.556
164 0.47
165 0.845
166 0.713
167 0.884
168 0.377
169 0.318
17 0.579
18 0.742
19 0.246
2 0.207
20 0.824
21 0.637
22 0.741
23 0.281
24 0.135
25 0.975
26 0.891
27 0.356
28 0.972
29 0.33
3 0.0877
30 0.324
31 0.219
32 0.328
33 0.201
34 0.152
35 0.173
36 0.172
37 0.344
38 0.481
39 0.33
4 0.341
40 0.262
41 0.534
42 0.717
43 0.235
44 0.015
45 0.882
46 0.908
47 0.408
48 0.242
49 0.862
5 0.817
50 0.563
51 0.947
52 0.694
53 0.52
54 0.376
55 0.926
56 0.872
57 0.242
58 0.471
59 0.0811
6 0.405
60 0.16
61 0.523
62 0.866
63 0.129
64 0.556
65 0.18
66 0.00111
67 0.961
68 0.195
69 0.98
7 0.359
70 0.0203
71 0.283
72 0.238
73 0.394
74 0.475
75 0.17
76 0.377
77 0.0681
78 0.598
79 0.00389
8 0.944
80 0.961
81 0.924
82 0.0314
83 0.233
84 0.0046
85 0.00386
86 0.112
87 0.713
88 0.357
89 0.714
9 0.943
90 0.87
91 0.0266
92 0.236
93 0.726
94 0.875
95 0.333
96 0.459
97 0.126
98 0.046
99 0.425



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs11729


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
4231 (histiocytoma)
201 (connective tissue cancer)
0060100 (musculoskeletal system cancer)
1115 (sarcoma)
1907 (malignant fibroxanthoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100453 (fibroblast cell line sample)
0100400 (sarcoma cell line sample)
0100460 (fibrosarcoma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

CL:0000134 (mesenchymal cell)