FF:10614-108G2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005958 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX007890;DRR008762;DRZ000187;DRZ001572;DRZ011537;DRZ012922 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000945,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010039,UBERON:0010317,UBERON:0001555,UBERON:0005409,UBERON:0001041 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002251,CL:0002178 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:299,DOID:3119 | |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:299,DOID:3119 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100167,FF:0100787,FF:0102380,FF:0102384 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:201979743..201979762,+!p1@ELF3!1.90!78.72!ELF3;;chr6:1312325..1312340,+!p1@FOXQ1!1.74!85.72!FOXQ1;;chr1:201979703..201979721,+!p2@ELF3!1.67!45.36!ELF3;;chr3:189349162..189349207,+!p2@TP63!1.65!43.36!TP63;;chr11:129245526..129245553,+!p1@BARX2!1.62!40.76!BARX2;;chr6:10415276..10415341,-!p2@TFAP2A!1.54!40.76!TFAP2A;;chr6:126240380..126240430,+!p2@NCOA7!1.50!77.73!NCOA7;;chr6:10412392..10412409,-!p4@TFAP2A!1.47!32.77!TFAP2A;;chr17:48072574..48072597,-!p1@DLX3!1.40!23.98!DLX3;;chr11:129245736..129245758,+!p2@BARX2!1.39!23.78!BARX2;;chr13:36788658..36788703,-!p2@CCDC169-SOHLH2,p2@SOHLH2!1.35!21.18!SOHLH2;;chr6:10412600..10412637,-!p1@TFAP2A!1.29!30.37!TFAP2A;;chr5:2751762..2751784,-!p1@IRX2!1.19!14.39!IRX2;;chr2:176969228..176969260,+!p1@HOXD11!1.17!13.79!HOXD11;;chr3:138665937..138665968,-!p1@FOXL2!1.17!13.79!FOXL2;;chr5:321810..321877,+!p1@AHRR!1.14!40.76!AHRR;;chr19:33793430..33793447,-!p1@CEBPA!1.13!52.75!CEBPA;;chr1:6479968..6479986,-!p1@HES2!1.11!11.79!HES2;;chr6:126240442..126240459,+!p4@NCOA7!1.10!14.99!NCOA7;;chr2:176969179..176969226,+!p2@HOXD11!1.10!11.59!HOXD11;;chr12:54332608..54332636,+!p1@HOXC13!1.09!11.39!HOXC13;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.05!10.19!HOXC5;;chrX:55620497..55620512,+!p@chrX:55620497..55620512,+!1.05!10.19!FOXR2;;chr11:16627528..16627550,-!p7@SOX6!1.04!9.99!SOX6;;chr20:30193083..30193098,+!p1@ID1!1.03!794.44!ID1;;chr6:29648890..29648944,-!p1@ZFP57!1.03!9.79!ZFP57;;chr10:48355030..48355090,+!p1@ZNF488!1.01!11.99!ZNF488;;chr7:57509877..57509895,+!p1@ZNF716!1.01!9.19!ZNF716;;chr17:46682321..46682362,-!p1@HOXB6!1.00!8.99!HOXB6;;chr1:41827095..41827155,+!p1@FOXO6!0.99!11.99!FOXO6;;chr20:50179368..50179392,-!p2@NFATC2!0.99!11.39!NFATC2;;chr6:126240463..126240489,+!p6@NCOA7!0.99!9.79!NCOA7;;chr6:126240356..126240379,+!p7@NCOA7!0.97!10.39!NCOA7;;chr21:38071430..38071456,+!p1@SIM2!0.97!8.39!SIM2;;chr12:54332652..54332671,+!p2@HOXC13!0.97!8.39!HOXC13;;chr2:172967621..172967637,-!p1@DLX2!0.96!22.58!DLX2;;chr12:54332687..54332701,+!p3@HOXC13!0.95!7.99!HOXC13;;chr6:10412576..10412599,-!p5@TFAP2A!0.95!7.99!TFAP2A;;chr16:86544113..86544145,+!p1@FOXF1!0.94!9.79!FOXF1;;chr6:21593973..21593988,+!p1@SOX4!0.93!280.93!SOX4;;chr7:27196267..27196311,-!p1@HOXA7!0.93!7.59!HOXA7;;chr17:7197911..7197964,-!p1@YBX2!0.93!7.59!YBX2;;chr3:138665969..138665993,-!p2@FOXL2!0.92!7.39!FOXL2;;chr5:172662197..172662216,-!p1@NKX2-5!0.92!7.39!NKX2-5;;chr3:12330560..12330579,+!p1@PPARG!0.91!8.19!PPARG;;chr17:46687959..46688007,-!p2@HOXB7!0.88!9.19!HOXB7;;chr6:10415484..10415508,-!p3@TFAP2A!0.87!6.39!TFAP2A;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.86!63.94!ZNF595;;chr5:134369905..134369972,-!p1@PITX1!0.86!9.79!PITX1;;chr17:48046543..48046575,+!p2@DLX4!0.84!5.99!DLX4;;chr12:125003087..125003141,-!p4@NCOR2!0.82!7.39!NCOR2;;chr5:124082322..124082364,-!p1@ZNF608!0.81!14.79!ZNF608;;chr6:10412477..10412490,-!p10@TFAP2A!0.81!5.39!TFAP2A;;chr7:27153454..27153469,-!p2@HOXA3!0.81!5.39!HOXA3;;chr9:124976154..124976177,-!p5@LHX6!0.81!5.39!LHX6;;chr20:42295745..42295765,+!p1@MYBL2!0.79!92.71!MYBL2;;chr20:50721803..50721857,-!p2@ZFP64!0.79!8.39!ZFP64;;chr12:54694758..54694805,-!p1@NFE2!0.79!6.39!NFE2;;chr6:10415263..10415274,-!p8@TFAP2A!0.79!5.20!TFAP2A;;chr9:124976185..124976212,-!p4@LHX6!0.79!5.20!LHX6;;chr3:189348969..189349018,+!p4@TP63!0.79!5.20!TP63;;chr1:10856639..10856662,-!p2@CASZ1!0.79!5.20!CASZ1;;chr10:51572408..51572454,+!p3@NCOA4!0.78!31.57!NCOA4;;chr12:53625966..53626012,-!p2@RARG!0.78!14.19!RARG;;chr6:21597370..21597408,+!p5@SOX4!0.78!8.39!SOX4;;chr13:28543285..28543314,-!p2@CDX2!0.78!5.00!CDX2;;chr21:38071403..38071428,+!p2@SIM2!0.78!5.00!SIM2;;chr14:89628064..89628109,-!p4@FOXN3!0.77!10.79!FOXN3;;chr20:50808667..50808729,-!p3@ZFP64!0.77!9.99!ZFP64;;chr10:8095593..8095625,+!p3@GATA3!0.77!5.79!GATA3;;chr12:53614115..53614154,-!p1@RARG!0.76!27.97!RARG;;chr19:33865009..33865090,+!p3@CEBPG!0.76!6.59!CEBPG;;chr19:22605136..22605154,-!p1@ZNF98!0.76!4.80!ZNF98;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.76!4.80!HOXC5;;chr13:28543431..28543487,-!p1@CDX2!0.76!4.80!CDX2;;chr5:121465234..121465263,+!p1@ZNF474!0.76!4.80!ZNF474;;chr7:63505799..63505904,+!p1@ZNF727!0.76!4.80!ZNF727;;chr12:52445218..52445237,+!p1@NR4A1!0.75!64.54!NR4A1;;chr19:33864571..33864596,+!p2@CEBPG!0.74!11.99!CEBPG;;chr18:55102628..55102646,+!p2@ONECUT2!0.73!4.40!ONECUT2;;chr12:53625846..53625861,-!p6@RARG!0.73!4.40!RARG;;chr19:47523058..47523114,+!p1@NPAS1!0.73!4.40!NPAS1;;chr19:35759824..35759891,+!p1@USF2!0.72!149.66!USF2;;chr18:55102598..55102623,+!p1@ONECUT2!0.72!4.20!ONECUT2;;chr19:22605097..22605121,-!p2@ZNF98!0.72!4.20!ZNF98;;chr20:50808639..50808661,-!p6@ZFP64!0.72!4.20!ZFP64;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!0.72!4.20!EN2;;chr7:5111723..5111807,+!p2@RBAK!0.72!4.20!RBAK;;chr8:10588010..10588030,-!p1@SOX7!0.72!4.20!SOX7;;chr8:11561684..11561751,+!p1@GATA4!0.72!4.20!GATA4;;chr8:41508327..41508355,-!p1@NKX6-3!0.72!4.20!NKX6-3;;chr2:172949484..172949522,+!p1@DLX1!0.72!4.20!DLX1;;chr2:45236540..45236577,-!p1@SIX2!0.72!4.20!SIX2;;chr17:46126136..46126152,+!p1@NFE2L1!0.71!240.17!NFE2L1;;chr12:125002827..125002855,-!p5@NCOR2!0.70!5.99!NCOR2;;chr1:10856665..10856683,-!p4@CASZ1!0.70!4.00!CASZ1;;chrX:55620481..55620492,+!p@chrX:55620481..55620492,+!0.70!4.00!FOXR2;;chr19:33864600..33864732,+!p1@CEBPG!0.69!125.28!CEBPG;;chr12:115121962..115121987,-!p1@TBX3!0.69!36.96!TBX3;;chr2:19558373..19558392,-!p1@OSR1!0.69!11.79!OSR1;;chr6:21597283..21597312,+!p7@SOX4!0.69!5.39!SOX4;;chr7:149470641..149470694,-!p1@ZNF467!0.68!19.38!ZNF467;;chr9:110250697..110250738,-!p2@KLF4!0.68!4.60!KLF4;;chr5:153857778..153857794,-!p1@HAND1!0.68!3.80!HAND1;;chr7:101917407..101917443,+!p3@CUX1!0.68!3.80!CUX1;;chr9:96717629..96717644,-!p1@BARX1!0.68!3.80!BARX1;;chr2:16080659..16080685,+!p1@MYCN!0.68!3.80!MYCN;;chr17:46127997..46128015,+!p5@NFE2L1!0.67!5.39!NFE2L1;;chr17:46806067..46806097,-!p1@HOXB13!0.66!3.60!HOXB13;;chr11:16629261..16629284,-!p1@SOX6!0.66!3.60!SOX6;;chrX:55620469..55620479,+!p@chrX:55620469..55620479,+!0.66!3.60!FOXR2;;chr9:110252035..110252057,-!p1@KLF4!0.65!64.94!KLF4;;chr16:67881588..67881612,-!p2@CENPT!0.65!5.00!CENPT;;chr9:110251836..110251887,-!p4@KLF4!0.65!4.80!KLF4;;chr18:22932080..22932170,-!p1@ZNF521!0.64!16.38!ZNF521;;chr16:79634595..79634620,-!p2@MAF!0.64!6.79!MAF;;chr17:48046642..48046667,+!p3@DLX4!0.64!3.40!DLX4;;chr12:54694653..54694672,-!p2@NFE2!0.64!3.40!NFE2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.63!38.16!GLIS2;;chr21:36421535..36421610,-!p2@RUNX1!0.63!13.39!RUNX1;;chr17:46688334..46688385,-!p1@HOXB7!0.63!5.00!HOXB7;;chr12:54447599..54447630,+!p3@HOXC4!0.63!4.20!HOXC4;;chr3:69788576..69788648,+!p1@MITF!0.62!19.58!MITF;;chr6:21594845..21594908,+!p6@SOX4!0.62!5.59!SOX4;;chr20:2673383..2673441,+!p1@EBF4!0.62!5.39!EBF4;;chr20:62680984..62680999,-!p1@SOX18!0.62!4.40!SOX18;;chr20:55204351..55204377,+!p1@TFAP2C!0.62!4.20!TFAP2C;;chr14:37131058..37131139,+!p1@PAX9!0.62!3.20!PAX9;;chr16:67881534..67881549,-!p4@CENPT!0.62!3.20!CENPT;;chr3:128206762..128206781,-!p2@GATA2!0.61!22.58!GATA2;;chr5:137804484..137804498,+!p2@EGR1!0.61!14.39!EGR1;;chr12:80084737..80084763,-!p3@PAWR!0.61!13.39!PAWR;;chr8:144766669..144766683,+!p2@ZNF707!0.61!6.19!ZNF707;;chr5:43120995..43121052,+!p1@ZNF131!0.60!17.98!ZNF131;;chr12:80084167..80084197,-!p5@PAWR!0.60!7.99!PAWR;;chr1:935398..935465,-!p2@HES4!0.60!6.99!HES4;;chr1:247171316..247171336,-!p3@ZNF695!0.60!4.80!ZNF695;;chr12:80083544..80083558,-!p13@PAWR!0.60!4.00!PAWR;;chr5:124082279..124082319,-!p3@ZNF608!0.60!3.80!ZNF608;;chr14:95236440..95236465,-!p1@GSC!0.60!3.00!GSC;;chr16:85932760..85932775,+!p1@IRF8!0.60!3.00!IRF8;;chr17:46703687..46703740,-!p1@HOXB9!0.60!3.00!HOXB9;;chr10:28032421..28032494,-!p2@MKX!0.60!3.00!MKX;;chr11:129245780..129245785,+!p5@BARX2!0.60!3.00!BARX2;;chr11:129245796..129245803,+!p3@BARX2!0.60!3.00!BARX2;;chr12:54332675..54332686,+!p4@HOXC13!0.60!3.00!HOXC13;;chr12:57914286..57914304,-!p1@DDIT3!0.59!127.68!DDIT3;;chr19:45971246..45971265,+!p1@FOSB!0.58!63.94!FOSB;;chr12:26277956..26277980,-!p1@BHLHE41!0.58!11.99!BHLHE41;;chr6:21597431..21597447,+!p8@SOX4!0.58!3.80!SOX4;;chr2:191878812..191878823,-!p2@STAT1!0.58!3.80!STAT1;;chr10:8096631..8096660,+!p1@GATA3!0.58!3.60!GATA3;;chr11:16629369..16629392,-!p5@SOX6!0.58!2.80!SOX6;;chr11:19262421..19262455,-!p3@E2F8!0.58!2.80!E2F8;;chr11:31832658..31832681,-!p1@PAX6!0.58!2.80!PAX6;;chr22:19748231..19748317,+!p1@TBX1!0.58!2.80!TBX1;;chr2:172950227..172950249,+!p2@DLX1!0.58!2.80!DLX1;;chr1:10856694..10856715,-!p3@CASZ1!0.58!2.80!CASZ1;;chr9:110252074..110252079,-!p3@KLF4!0.57!5.00!KLF4;;chr1:59249645..59249656,-!p4@JUN!0.56!7.79!JUN;;chr6:21597514..21597578,+!p4@SOX4!0.56!5.00!SOX4;;chr14:75746722..75746777,+!p2@FOS!0.56!3.60!FOS;;chr15:76629123..76629151,+!p1@ISL2!0.56!3.00!ISL2;;chr17:46687935..46687950,-!p3@HOXB7!0.56!2.60!HOXB7;;chr2:176969124..176969155,+!p5@HOXD11!0.56!2.60!HOXD11;;chr2:176994408..176994492,+!p1@HOXD8!0.56!2.60!HOXD8;;chr2:223163706..223163730,-!p1@PAX3!0.56!2.60!PAX3;;chr4:149363475..149363492,-!p2@NR3C2!0.56!2.60!NR3C2;;chr4:149363494..149363543,-!p1@NR3C2!0.56!2.60!NR3C2;;chr11:16627614..16627651,-!p4@SOX6!0.56!2.60!SOX6;;chr5:121465268..121465281,+!p2@ZNF474!0.56!2.60!ZNF474;;chr5:134369879..134369898,-!p2@PITX1!0.56!2.60!PITX1;;chr7:156803329..156803362,-!p1@MNX1!0.56!2.60!MNX1;;chr9:124976299..124976327,-!p3@LHX6!0.56!2.60!LHX6;;chr9:124976328..124976372,-!p2@LHX6!0.56!2.60!LHX6;;chr19:49140609..49140643,-!p1@DBP!0.55!17.78!DBP;;chr2:239148671..239148686,-!p1@HES6!0.55!11.39!HES6;;chr1:8934931..8934947,-!p4@ENO1!0.55!9.99!ENO1;;chr7:27135591..27135658,-!p1@HOXA1!0.55!5.59!HOXA1;;chr7:27788205..27788255,+!p2@TAX1BP1!0.55!4.40!TAX1BP1;;chrX:76937934..76937974,-!p3@ATRX!0.55!4.40!ATRX;;chr7:149470540..149470596,-!p2@ZNF467!0.55!3.60!ZNF467;;chr11:6947720..6947812,+!p1@ZNF215!0.55!3.60!ZNF215;;chr20:47894569..47894799,-!p1@ZNFX1!0.54!84.32!ZNFX1;;chr19:36706024..36706049,+!p1@ZNF146!0.54!56.75!ZNF146;;chr1:246729483..246729538,-!p2@TF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RA!0.21!3.40!RXRA;;chr9:3525727..3525828,-!p2@RFX3!0.21!3.00!RFX3;;chr19:46271505..46271575,-!p2@SIX5!0.21!3.00!SIX5;;chr13:45011349..45011391,-!p4@TSC22D1!0.21!2.80!TSC22D1;;chr1:249153232..249153251,-!p2@ZNF692!0.21!2.60!ZNF692;;chr8:67525473..67525518,-!p1@MYBL1!0.21!2.60!MYBL1;;chr7:99102592..99102620,+!p3@ZKSCAN5!0.21!2.40!ZKSCAN5;;chr19:50879683..50879695,+!p2@NR1H2!0.21!2.40!NR1H2;;chr16:54320675..54320715,-!p1@IRX3!0.21!2.40!IRX3;;chr19:37341160..37341194,-!p2@ZNF790!0.21!2.40!ZNF790;;chr3:5021268..5021282,+!p4@BHLHE40!0.21!2.20!BHLHE40;;chr9:73028387..73028418,-!p4@KLF9!0.21!2.20!KLF9;;chr1:249153114..249153175,-!p3@ZNF692!0.21!2.00!ZNF692;;chr12:72058102..72058127,+!p7@THAP2!0.21!1.80!THAP2;;chr19:10305752..10305792,-!p2@DNMT1!0.21!1.80!DNMT1;;chr19:21324863..21324874,+!p2@ZNF431!0.21!1.80!ZNF431;;chr19:36980756..36980795,-!p3@ZNF566!0.21!1.60!ZNF566;;chr2:121493492..121493537,+!p2@GLI2!0.21!1.60!GLI2;;chr2:85980951..85981004,+!p1@ATOH8!0.21!1.60!ATOH8;;chr19:53466067..53466087,-!p3@ZNF321P,p3@ZNF816-ZNF321P,p3@ZNF816!0.21!1.40!ZNF816;;chr19:57019215..57019250,+!p1@ZNF471!0.21!1.40!ZNF471;;chr1:8926441..8926473,-!p10@ENO1!0.21!1.40!ENO1;;chr3:101395919..101395930,-!p4@ZBTB11!0.21!1.20!ZBTB11;;chr3:169490606..169490621,+!p3@MYNN!0.21!1.20!MYNN;;chr12:10865870..10865888,-!p6@CSDA!0.21!1.20!CSDA;;chrX:107018969..107019024,-!p6@TSC22D3!0.21!1.20!TSC22D3;;chrX:76938351..76938379,-!p7@ATRX!0.21!1.00!ATRX;;chr3:150126200..150126211,+!p11@TSC22D2!0.21!1.00!TSC22D2;;chr4:185395590..185395627,-!p3@IRF2!0.21!1.00!IRF2;;chr1:247495210..247495226,-!p4@ZNF496!0.21!1.00!ZNF496;;chr20:48807548..48807572,+!p14@CEBPB!0.21!1.00!CEBPB;;chr16:29818992..29819023,+!p24@MAZ!0.21!1.00!MAZ;;chr18:3449618..3449634,+!p13@TGIF1!0.21!1.00!TGIF1;;chr18:45457909..45457939,-!p8@SMAD2!0.21!1.00!SMAD2;;chr15:96869511..96869525,+!p16@NR2F2!0.21!0.80!NR2F2;;chr15:96876340..96876348,+!p22@NR2F2!0.21!0.80!NR2F2;;chr16:3333546..3333558,+!p5@ZNF263!0.21!0.80!ZNF263;;chr1:235344971..235344985,-!p5@ARID4B!0.21!0.80!ARID4B;;chr1:61548118..61548129,+!p9@NFIA!0.21!0.80!NFIA;;chr21:40177845..40177863,+!p1@ETS2!0.20!84.32!ETS2;;chr17:38219209..38219230,+!p1@THRA!0.20!17.98!THRA;;chr19:9251052..9251079,+!p2@ZNF317!0.20!13.59!ZNF317;;chr3:129158715..129158766,-!p2@MBD4!0.20!13.19!MBD4;;chr7:101459230..101459243,+!p2@CUX1!0.20!6.39!CUX1;;chr19:58193338..58193386,+!p1@ZNF551,p2@ZNF776!0.20!6.19!ZNF551;;chr19:19976683..19976709,+!p1@ZNF253!0.20!5.59!ZNF253;;chr19:9785724..9785740,-!p2@ZNF562!0.20!5.00!ZNF562;;chr1:158979872..158979898,+!p3@IFI16!0.20!3.60!IFI16;;chr1:41174988..41175047,+!p4@NFYC!0.20!3.00!NFYC;;chr9:109625401..109625458,+!p1@ZNF462!0.20!3.00!ZNF462;;chr8:145159447..145159458,+!p4@MAF1!0.20!2.60!MAF1;;chr19:52430697..52430749,+!p1@ZNF613!0.20!2.60!ZNF613;;chr19:12035878..12035902,+!p2@ZNF700,p2@ZNF763!0.20!2.60!ZNF700;;chr12:53848505..53848532,+!p4@PCBP2!0.20!2.40!PCBP2;;chr19:36391434..36391450,-!p1@NFKBID!0.20!2.00!NFKBID;;chr17:36861735..36861755,+!p4@MLLT6!0.20!1.60!MLLT6;;chr19:12075844..12075880,+!p3@ZNF763!0.20!1.60!ZNF763;;chr1:226595648..226595659,-!p3@PARP1!0.20!1.60!PARP1;;chr19:45261992..45262010,+!p9@BCL3!0.20!1.20!BCL3;;chr19:50431973..50431998,+!p5@ATF5!0.20!1.00!ATF5;;chr8:60031809..60031835,-!p4@TOX!0.20!1.00!TOX;;chr5:124082580..124082603,-!p4@ZNF608!0.20!0.80!ZNF608;;chr17:17726892..17726903,-!p6@SREBF1!0.20!0.80!SREBF1;;chr17:38504601..38504634,+!p9@RARA!0.20!0.80!RARA;;chr14:61116168..61116180,-!p2@SIX1!0.20!0.80!SIX1;; | |expression_enrichment_score=chr1:201979743..201979762,+!p1@ELF3!1.90!78.72!ELF3;;chr6:1312325..1312340,+!p1@FOXQ1!1.74!85.72!FOXQ1;;chr1:201979703..201979721,+!p2@ELF3!1.67!45.36!ELF3;;chr3:189349162..189349207,+!p2@TP63!1.65!43.36!TP63;;chr11:129245526..129245553,+!p1@BARX2!1.62!40.76!BARX2;;chr6:10415276..10415341,-!p2@TFAP2A!1.54!40.76!TFAP2A;;chr6:126240380..126240430,+!p2@NCOA7!1.50!77.73!NCOA7;;chr6:10412392..10412409,-!p4@TFAP2A!1.47!32.77!TFAP2A;;chr17:48072574..48072597,-!p1@DLX3!1.40!23.98!DLX3;;chr11:129245736..129245758,+!p2@BARX2!1.39!23.78!BARX2;;chr13:36788658..36788703,-!p2@CCDC169-SOHLH2,p2@SOHLH2!1.35!21.18!SOHLH2;;chr6:10412600..10412637,-!p1@TFAP2A!1.29!30.37!TFAP2A;;chr5:2751762..2751784,-!p1@IRX2!1.19!14.39!IRX2;;chr2:176969228..176969260,+!p1@HOXD11!1.17!13.79!HOXD11;;chr3:138665937..138665968,-!p1@FOXL2!1.17!13.79!FOXL2;;chr5:321810..321877,+!p1@AHRR!1.14!40.76!AHRR;;chr19:33793430..33793447,-!p1@CEBPA!1.13!52.75!CEBPA;;chr1:6479968..6479986,-!p1@HES2!1.11!11.79!HES2;;chr6:126240442..126240459,+!p4@NCOA7!1.10!14.99!NCOA7;;chr2:176969179..176969226,+!p2@HOXD11!1.10!11.59!HOXD11;;chr12:54332608..54332636,+!p1@HOXC13!1.09!11.39!HOXC13;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.05!10.19!HOXC5;;chrX:55620497..55620512,+!p@chrX:55620497..55620512,+!1.05!10.19!FOXR2;;chr11:16627528..16627550,-!p7@SOX6!1.04!9.99!SOX6;;chr20:30193083..30193098,+!p1@ID1!1.03!794.44!ID1;;chr6:29648890..29648944,-!p1@ZFP57!1.03!9.79!ZFP57;;chr10:48355030..48355090,+!p1@ZNF488!1.01!11.99!ZNF488;;chr7:57509877..57509895,+!p1@ZNF716!1.01!9.19!ZNF716;;chr17:46682321..46682362,-!p1@HOXB6!1.00!8.99!HOXB6;;chr1:41827095..41827155,+!p1@FOXO6!0.99!11.99!FOXO6;;chr20:50179368..50179392,-!p2@NFATC2!0.99!11.39!NFATC2;;chr6:126240463..126240489,+!p6@NCOA7!0.99!9.79!NCOA7;;chr6:126240356..126240379,+!p7@NCOA7!0.97!10.39!NCOA7;;chr21:38071430..38071456,+!p1@SIM2!0.97!8.39!SIM2;;chr12:54332652..54332671,+!p2@HOXC13!0.97!8.39!HOXC13;;chr2:172967621..172967637,-!p1@DLX2!0.96!22.58!DLX2;;chr12:54332687..54332701,+!p3@HOXC13!0.95!7.99!HOXC13;;chr6:10412576..10412599,-!p5@TFAP2A!0.95!7.99!TFAP2A;;chr16:86544113..86544145,+!p1@FOXF1!0.94!9.79!FOXF1;;chr6:21593973..21593988,+!p1@SOX4!0.93!280.93!SOX4;;chr7:27196267..27196311,-!p1@HOXA7!0.93!7.59!HOXA7;;chr17:7197911..7197964,-!p1@YBX2!0.93!7.59!YBX2;;chr3:138665969..138665993,-!p2@FOXL2!0.92!7.39!FOXL2;;chr5:172662197..172662216,-!p1@NKX2-5!0.92!7.39!NKX2-5;;chr3:12330560..12330579,+!p1@PPARG!0.91!8.19!PPARG;;chr17:46687959..46688007,-!p2@HOXB7!0.88!9.19!HOXB7;;chr6:10415484..10415508,-!p3@TFAP2A!0.87!6.39!TFAP2A;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.86!63.94!ZNF595;;chr5:134369905..134369972,-!p1@PITX1!0.86!9.79!PITX1;;chr17:48046543..48046575,+!p2@DLX4!0.84!5.99!DLX4;;chr12:125003087..125003141,-!p4@NCOR2!0.82!7.39!NCOR2;;chr5:124082322..124082364,-!p1@ZNF608!0.81!14.79!ZNF608;;chr6:10412477..10412490,-!p10@TFAP2A!0.81!5.39!TFAP2A;;chr7:27153454..27153469,-!p2@HOXA3!0.81!5.39!HOXA3;;chr9:124976154..124976177,-!p5@LHX6!0.81!5.39!LHX6;;chr20:42295745..42295765,+!p1@MYBL2!0.79!92.71!MYBL2;;chr20:50721803..50721857,-!p2@ZFP64!0.79!8.39!ZFP64;;chr12:54694758..54694805,-!p1@NFE2!0.79!6.39!NFE2;;chr6:10415263..10415274,-!p8@TFAP2A!0.79!5.20!TFAP2A;;chr9:124976185..124976212,-!p4@LHX6!0.79!5.20!LHX6;;chr3:189348969..189349018,+!p4@TP63!0.79!5.20!TP63;;chr1:10856639..10856662,-!p2@CASZ1!0.79!5.20!CASZ1;;chr10:51572408..51572454,+!p3@NCOA4!0.78!31.57!NCOA4;;chr12:53625966..53626012,-!p2@RARG!0.78!14.19!RARG;;chr6:21597370..21597408,+!p5@SOX4!0.78!8.39!SOX4;;chr13:28543285..28543314,-!p2@CDX2!0.78!5.00!CDX2;;chr21:38071403..38071428,+!p2@SIM2!0.78!5.00!SIM2;;chr14:89628064..89628109,-!p4@FOXN3!0.77!10.79!FOXN3;;chr20:50808667..50808729,-!p3@ZFP64!0.77!9.99!ZFP64;;chr10:8095593..8095625,+!p3@GATA3!0.77!5.79!GATA3;;chr12:53614115..53614154,-!p1@RARG!0.76!27.97!RARG;;chr19:33865009..33865090,+!p3@CEBPG!0.76!6.59!CEBPG;;chr19:22605136..22605154,-!p1@ZNF98!0.76!4.80!ZNF98;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.76!4.80!HOXC5;;chr13:28543431..28543487,-!p1@CDX2!0.76!4.80!CDX2;;chr5:121465234..121465263,+!p1@ZNF474!0.76!4.80!ZNF474;;chr7:63505799..63505904,+!p1@ZNF727!0.76!4.80!ZNF727;;chr12:52445218..52445237,+!p1@NR4A1!0.75!64.54!NR4A1;;chr19:33864571..33864596,+!p2@CEBPG!0.74!11.99!CEBPG;;chr18:55102628..55102646,+!p2@ONECUT2!0.73!4.40!ONECUT2;;chr12:53625846..53625861,-!p6@RARG!0.73!4.40!RARG;;chr19:47523058..47523114,+!p1@NPAS1!0.73!4.40!NPAS1;;chr19:35759824..35759891,+!p1@USF2!0.72!149.66!USF2;;chr18:55102598..55102623,+!p1@ONECUT2!0.72!4.20!ONECUT2;;chr19:22605097..22605121,-!p2@ZNF98!0.72!4.20!ZNF98;;chr20:50808639..50808661,-!p6@ZFP64!0.72!4.20!ZFP64;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!0.72!4.20!EN2;;chr7:5111723..5111807,+!p2@RBAK!0.72!4.20!RBAK;;chr8:10588010..10588030,-!p1@SOX7!0.72!4.20!SOX7;;chr8:11561684..11561751,+!p1@GATA4!0.72!4.20!GATA4;;chr8:41508327..41508355,-!p1@NKX6-3!0.72!4.20!NKX6-3;;chr2:172949484..172949522,+!p1@DLX1!0.72!4.20!DLX1;;chr2:45236540..45236577,-!p1@SIX2!0.72!4.20!SIX2;;chr17:46126136..46126152,+!p1@NFE2L1!0.71!240.17!NFE2L1;;chr12:125002827..125002855,-!p5@NCOR2!0.70!5.99!NCOR2;;chr1:10856665..10856683,-!p4@CASZ1!0.70!4.00!CASZ1;;chrX:55620481..55620492,+!p@chrX:55620481..55620492,+!0.70!4.00!FOXR2;;chr19:33864600..33864732,+!p1@CEBPG!0.69!125.28!CEBPG;;chr12:115121962..115121987,-!p1@TBX3!0.69!36.96!TBX3;;chr2:19558373..19558392,-!p1@OSR1!0.69!11.79!OSR1;;chr6:21597283..21597312,+!p7@SOX4!0.69!5.39!SOX4;;chr7:149470641..149470694,-!p1@ZNF467!0.68!19.38!ZNF467;;chr9:110250697..110250738,-!p2@KLF4!0.68!4.60!KLF4;;chr5:153857778..153857794,-!p1@HAND1!0.68!3.80!HAND1;;chr7:101917407..101917443,+!p3@CUX1!0.68!3.80!CUX1;;chr9:96717629..96717644,-!p1@BARX1!0.68!3.80!BARX1;;chr2:16080659..16080685,+!p1@MYCN!0.68!3.80!MYCN;;chr17:46127997..46128015,+!p5@NFE2L1!0.67!5.39!NFE2L1;;chr17:46806067..46806097,-!p1@HOXB13!0.66!3.60!HOXB13;;chr11:16629261..16629284,-!p1@SOX6!0.66!3.60!SOX6;;chrX:55620469..55620479,+!p@chrX:55620469..55620479,+!0.66!3.60!FOXR2;;chr9:110252035..110252057,-!p1@KLF4!0.65!64.94!KLF4;;chr16:67881588..67881612,-!p2@CENPT!0.65!5.00!CENPT;;chr9:110251836..110251887,-!p4@KLF4!0.65!4.80!KLF4;;chr18:22932080..22932170,-!p1@ZNF521!0.64!16.38!ZNF521;;chr16:79634595..79634620,-!p2@MAF!0.64!6.79!MAF;;chr17:48046642..48046667,+!p3@DLX4!0.64!3.40!DLX4;;chr12:54694653..54694672,-!p2@NFE2!0.64!3.40!NFE2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.63!38.16!GLIS2;;chr21:36421535..36421610,-!p2@RUNX1!0.63!13.39!RUNX1;;chr17:46688334..46688385,-!p1@HOXB7!0.63!5.00!HOXB7;;chr12:54447599..54447630,+!p3@HOXC4!0.63!4.20!HOXC4;;chr3:69788576..69788648,+!p1@MITF!0.62!19.58!MITF;;chr6:21594845..21594908,+!p6@SOX4!0.62!5.59!SOX4;;chr20:2673383..2673441,+!p1@EBF4!0.62!5.39!EBF4;;chr20:62680984..62680999,-!p1@SOX18!0.62!4.40!SOX18;;chr20:55204351..55204377,+!p1@TFAP2C!0.62!4.20!TFAP2C;;chr14:37131058..37131139,+!p1@PAX9!0.62!3.20!PAX9;;chr16:67881534..67881549,-!p4@CENPT!0.62!3.20!CENPT;;chr3:128206762..128206781,-!p2@GATA2!0.61!22.58!GATA2;;chr5:137804484..137804498,+!p2@EGR1!0.61!14.39!EGR1;;chr12:80084737..80084763,-!p3@PAWR!0.61!13.39!PAWR;;chr8:144766669..144766683,+!p2@ZNF707!0.61!6.19!ZNF707;;chr5:43120995..43121052,+!p1@ZNF131!0.60!17.98!ZNF131;;chr12:80084167..80084197,-!p5@PAWR!0.60!7.99!PAWR;;chr1:935398..935465,-!p2@HES4!0.60!6.99!HES4;;chr1:247171316..247171336,-!p3@ZNF695!0.60!4.80!ZNF695;;chr12:80083544..80083558,-!p13@PAWR!0.60!4.00!PAWR;;chr5:124082279..124082319,-!p3@ZNF608!0.60!3.80!ZNF608;;chr14:95236440..95236465,-!p1@GSC!0.60!3.00!GSC;;chr16:85932760..85932775,+!p1@IRF8!0.60!3.00!IRF8;;chr17:46703687..46703740,-!p1@HOXB9!0.60!3.00!HOXB9;;chr10:28032421..28032494,-!p2@MKX!0.60!3.00!MKX;;chr11:129245780..129245785,+!p5@BARX2!0.60!3.00!BARX2;;chr11:129245796..129245803,+!p3@BARX2!0.60!3.00!BARX2;;chr12:54332675..54332686,+!p4@HOXC13!0.60!3.00!HOXC13;;chr12:57914286..57914304,-!p1@DDIT3!0.59!127.68!DDIT3;;chr19:45971246..45971265,+!p1@FOSB!0.58!63.94!FOSB;;chr12:26277956..26277980,-!p1@BHLHE41!0.58!11.99!BHLHE41;;chr6:21597431..21597447,+!p8@SOX4!0.58!3.80!SOX4;;chr2:191878812..191878823,-!p2@STAT1!0.58!3.80!STAT1;;chr10:8096631..8096660,+!p1@GATA3!0.58!3.60!GATA3;;chr11:16629369..16629392,-!p5@SOX6!0.58!2.80!SOX6;;chr11:19262421..19262455,-!p3@E2F8!0.58!2.80!E2F8;;chr11:31832658..31832681,-!p1@PAX6!0.58!2.80!PAX6;;chr22:19748231..19748317,+!p1@TBX1!0.58!2.80!TBX1;;chr2:172950227..172950249,+!p2@DLX1!0.58!2.80!DLX1;;chr1:10856694..10856715,-!p3@CASZ1!0.58!2.80!CASZ1;;chr9:110252074..110252079,-!p3@KLF4!0.57!5.00!KLF4;;chr1:59249645..59249656,-!p4@JUN!0.56!7.79!JUN;;chr6:21597514..21597578,+!p4@SOX4!0.56!5.00!SOX4;;chr14:75746722..75746777,+!p2@FOS!0.56!3.60!FOS;;chr15:76629123..76629151,+!p1@ISL2!0.56!3.00!ISL2;;chr17:46687935..46687950,-!p3@HOXB7!0.56!2.60!HOXB7;;chr2:176969124..176969155,+!p5@HOXD11!0.56!2.60!HOXD11;;chr2:176994408..176994492,+!p1@HOXD8!0.56!2.60!HOXD8;;chr2:223163706..223163730,-!p1@PAX3!0.56!2.60!PAX3;;chr4:149363475..149363492,-!p2@NR3C2!0.56!2.60!NR3C2;;chr4:149363494..149363543,-!p1@NR3C2!0.56!2.60!NR3C2;;chr11:16627614..16627651,-!p4@SOX6!0.56!2.60!SOX6;;chr5:121465268..121465281,+!p2@ZNF474!0.56!2.60!ZNF474;;chr5:134369879..134369898,-!p2@PITX1!0.56!2.60!PITX1;;chr7:156803329..156803362,-!p1@MNX1!0.56!2.60!MNX1;;chr9:124976299..124976327,-!p3@LHX6!0.56!2.60!LHX6;;chr9:124976328..124976372,-!p2@LHX6!0.56!2.60!LHX6;;chr19:49140609..49140643,-!p1@DBP!0.55!17.78!DBP;;chr2:239148671..239148686,-!p1@HES6!0.55!11.39!HES6;;chr1:8934931..8934947,-!p4@ENO1!0.55!9.99!ENO1;;chr7:27135591..27135658,-!p1@HOXA1!0.55!5.59!HOXA1;;chr7:27788205..27788255,+!p2@TAX1BP1!0.55!4.40!TAX1BP1;;chrX:76937934..76937974,-!p3@ATRX!0.55!4.40!ATRX;;chr7:149470540..149470596,-!p2@ZNF467!0.55!3.60!ZNF467;;chr11:6947720..6947812,+!p1@ZNF215!0.55!3.60!ZNF215;;chr20:47894569..47894799,-!p1@ZNFX1!0.54!84.32!ZNFX1;;chr19:36706024..36706049,+!p1@ZNF146!0.54!56.75!ZNF146;;chr1:246729483..246729538,-!p2@TF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RA!0.21!3.40!RXRA;;chr9:3525727..3525828,-!p2@RFX3!0.21!3.00!RFX3;;chr19:46271505..46271575,-!p2@SIX5!0.21!3.00!SIX5;;chr13:45011349..45011391,-!p4@TSC22D1!0.21!2.80!TSC22D1;;chr1:249153232..249153251,-!p2@ZNF692!0.21!2.60!ZNF692;;chr8:67525473..67525518,-!p1@MYBL1!0.21!2.60!MYBL1;;chr7:99102592..99102620,+!p3@ZKSCAN5!0.21!2.40!ZKSCAN5;;chr19:50879683..50879695,+!p2@NR1H2!0.21!2.40!NR1H2;;chr16:54320675..54320715,-!p1@IRX3!0.21!2.40!IRX3;;chr19:37341160..37341194,-!p2@ZNF790!0.21!2.40!ZNF790;;chr3:5021268..5021282,+!p4@BHLHE40!0.21!2.20!BHLHE40;;chr9:73028387..73028418,-!p4@KLF9!0.21!2.20!KLF9;;chr1:249153114..249153175,-!p3@ZNF692!0.21!2.00!ZNF692;;chr12:72058102..72058127,+!p7@THAP2!0.21!1.80!THAP2;;chr19:10305752..10305792,-!p2@DNMT1!0.21!1.80!DNMT1;;chr19:21324863..21324874,+!p2@ZNF431!0.21!1.80!ZNF431;;chr19:36980756..36980795,-!p3@ZNF566!0.21!1.60!ZNF566;;chr2:121493492..121493537,+!p2@GLI2!0.21!1.60!GLI2;;chr2:85980951..85981004,+!p1@ATOH8!0.21!1.60!ATOH8;;chr19:53466067..53466087,-!p3@ZNF321P,p3@ZNF816-ZNF321P,p3@ZNF816!0.21!1.40!ZNF816;;chr19:57019215..57019250,+!p1@ZNF471!0.21!1.40!ZNF471;;chr1:8926441..8926473,-!p10@ENO1!0.21!1.40!ENO1;;chr3:101395919..101395930,-!p4@ZBTB11!0.21!1.20!ZBTB11;;chr3:169490606..169490621,+!p3@MYNN!0.21!1.20!MYNN;;chr12:10865870..10865888,-!p6@CSDA!0.21!1.20!CSDA;;chrX:107018969..107019024,-!p6@TSC22D3!0.21!1.20!TSC22D3;;chrX:76938351..76938379,-!p7@ATRX!0.21!1.00!ATRX;;chr3:150126200..150126211,+!p11@TSC22D2!0.21!1.00!TSC22D2;;chr4:185395590..185395627,-!p3@IRF2!0.21!1.00!IRF2;;chr1:247495210..247495226,-!p4@ZNF496!0.21!1.00!ZNF496;;chr20:48807548..48807572,+!p14@CEBPB!0.21!1.00!CEBPB;;chr16:29818992..29819023,+!p24@MAZ!0.21!1.00!MAZ;;chr18:3449618..3449634,+!p13@TGIF1!0.21!1.00!TGIF1;;chr18:45457909..45457939,-!p8@SMAD2!0.21!1.00!SMAD2;;chr15:96869511..96869525,+!p16@NR2F2!0.21!0.80!NR2F2;;chr15:96876340..96876348,+!p22@NR2F2!0.21!0.80!NR2F2;;chr16:3333546..3333558,+!p5@ZNF263!0.21!0.80!ZNF263;;chr1:235344971..235344985,-!p5@ARID4B!0.21!0.80!ARID4B;;chr1:61548118..61548129,+!p9@NFIA!0.21!0.80!NFIA;;chr21:40177845..40177863,+!p1@ETS2!0.20!84.32!ETS2;;chr17:38219209..38219230,+!p1@THRA!0.20!17.98!THRA;;chr19:9251052..9251079,+!p2@ZNF317!0.20!13.59!ZNF317;;chr3:129158715..129158766,-!p2@MBD4!0.20!13.19!MBD4;;chr7:101459230..101459243,+!p2@CUX1!0.20!6.39!CUX1;;chr19:58193338..58193386,+!p1@ZNF551,p2@ZNF776!0.20!6.19!ZNF551;;chr19:19976683..19976709,+!p1@ZNF253!0.20!5.59!ZNF253;;chr19:9785724..9785740,-!p2@ZNF562!0.20!5.00!ZNF562;;chr1:158979872..158979898,+!p3@IFI16!0.20!3.60!IFI16;;chr1:41174988..41175047,+!p4@NFYC!0.20!3.00!NFYC;;chr9:109625401..109625458,+!p1@ZNF462!0.20!3.00!ZNF462;;chr8:145159447..145159458,+!p4@MAF1!0.20!2.60!MAF1;;chr19:52430697..52430749,+!p1@ZNF613!0.20!2.60!ZNF613;;chr19:12035878..12035902,+!p2@ZNF700,p2@ZNF763!0.20!2.60!ZNF700;;chr12:53848505..53848532,+!p4@PCBP2!0.20!2.40!PCBP2;;chr19:36391434..36391450,-!p1@NFKBID!0.20!2.00!NFKBID;;chr17:36861735..36861755,+!p4@MLLT6!0.20!1.60!MLLT6;;chr19:12075844..12075880,+!p3@ZNF763!0.20!1.60!ZNF763;;chr1:226595648..226595659,-!p3@PARP1!0.20!1.60!PARP1;;chr19:45261992..45262010,+!p9@BCL3!0.20!1.20!BCL3;;chr19:50431973..50431998,+!p5@ATF5!0.20!1.00!ATF5;;chr8:60031809..60031835,-!p4@TOX!0.20!1.00!TOX;;chr5:124082580..124082603,-!p4@ZNF608!0.20!0.80!ZNF608;;chr17:17726892..17726903,-!p6@SREBF1!0.20!0.80!SREBF1;;chr17:38504601..38504634,+!p9@RARA!0.20!0.80!RARA;;chr14:61116168..61116180,-!p2@SIX1!0.20!0.80!SIX1;; | ||
|ffid_belonging_in_development=CL:0000223,UBERON:0002532,UBERON:0006595,UBERON:0010316 | |||
|fonse_cell_line=FF:0100787,FF:0101120 | |fonse_cell_line=FF:0100787,FF:0101120 | ||
|fonse_cell_line_closure=FF:0100787,FF:0101120 | |fonse_cell_line_closure=FF:0100787,FF:0101120 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN1.CNhs11737.10614-108G2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN1.CNhs11737.10614-108G2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN1.CNhs11737.10614-108G2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN1.CNhs11737.10614-108G2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN1.CNhs11737.10614-108G2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10614-108G2 | |id=FF:10614-108G2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0102384 | ||
|is_obsolete= | |||
|library_id=CNhs11737 | |||
|library_id_phase_based=2:CNhs11737 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10614 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10614 | |||
|name=gastric adenocarcinoma cell line:MKN1 | |name=gastric adenocarcinoma cell line:MKN1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11737,LSID819,release009,COMPLETED | |profile_hcage=CNhs11737,LSID819,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.150411616341622,0,0,0,0,-0.0143081326289919,0.146009897457394,-0.07339721254388,0.474981049941313,0,0,0,0,0,0,0,0,0,0,0.079112335990984,0,0,0.0506419093012064,0,0,0,0.073004948728697,0,0.406907757567826,0,0,0.122132130869951,0,0,0,0,0,0,0,0,0,0,0.255088720648814,0,0.0045118993756089,0.255088720648814,0.079112335990984,0,0.079112335990984,0,0,0,0,0.0153411468826577,0,0,0,0,0,0,0,0.459011450279092,0,0,-0.0182312912221129,0,0,0,0,0,0,0,0.0219525385764536,0,0,0,0,0,0,0,0,0,0,0,0,0.168947730859602,0,0,0,-0.0103770187600056,0,0,0,0.146857970089511,-0.0400988445335016,0,0,0.039556167995492,0,0.105929568411928,0.36563635727616,0,0,0,0,0,0,0.203964919649634,0,0,0,0.229526820149224,0,0,0,0,0,0,-0.056817425926969,0,0,0,-0.00579231112751172,-0.0605346468113364,0,0,0.188227572451004,0,0,0 | |||
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| |||
|rna_box=108 | |rna_box=108 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=29.35714 | |rna_weight_ug=29.35714 | ||
|sample_age=72 | |sample_age=72 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1003 | |sample_cell_catalog=RCB1003 | ||
|sample_cell_line=MKN1 | |sample_cell_line=MKN1 | ||
| Line 77: | Line 99: | ||
|sample_tissue=stomach | |sample_tissue=stomach | ||
|top_motifs=bHLH_family:1.98943527585;FOXM1:1.78738261314;BPTF:1.22102914707;PPARG:1.20865318948;ELK1,4_GABP{A,B1}:1.15919530406;TEF:1.06581687462;UFEwm:1.0409697915;RBPJ:0.990770183954;AIRE:0.955792925584;TBX4,5:0.931028809271;SNAI1..3:0.918776646226;TP53:0.867706145968;HSF1,2:0.847875626735;HOX{A6,A7,B6,B7}:0.778339765277;SP1:0.728701207614;ZEB1:0.717005757693;GCM1,2:0.714733158849;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.586976416793;ZNF143:0.536468727551;ZBTB16:0.530066173381;IRF7:0.528714639802;ZNF148:0.512830195938;MYOD1:0.488856304459;ARID5B:0.481947212111;IRF1,2:0.477412191836;TBP:0.466898630356;RXR{A,B,G}:0.438003021885;POU6F1:0.418102650262;HOXA9_MEIS1:0.400516318735;ONECUT1,2:0.393182585203;IKZF2:0.387526553083;HES1:0.355826521261;TEAD1:0.348798985136;CDC5L:0.340836186694;EGR1..3:0.31563215683;NKX2-1,4:0.30275267797;TFAP2{A,C}:0.283893705718;E2F1..5:0.255785831026;PAX8:0.250993399711;CDX1,2,4:0.239432020173;IKZF1:0.233571809427;FOXQ1:0.232057911659;ZNF423:0.220307511104;TFAP2B:0.188619552388;GFI1:0.17239292156;PAX2:0.167601270485;ZNF384:0.159566731729;SPZ1:0.158953210003;RFX1:0.142892476891;GTF2A1,2:0.124488069792;MTF1:0.118299258996;XCPE1{core}:0.108885550288;LMO2:0.101775209533;HOX{A4,D4}:0.0972319181412;RREB1:0.0895140174214;EVI1:0.0888533741372;NFY{A,B,C}:0.0726401597007;YY1:0.0667134156744;FOX{D1,D2}:0.0640947394499;TLX1..3_NFIC{dimer}:0.0514983594194;SOX5:0.0504765928622;MED-1{core}:0.0362594342617;ATF4:0.0315321532756;ESR1:0.029221442197;ALX1:0.0276084804007;GATA4:0.00503727166615;NR5A1,2:-0.00869442045471;TFDP1:-0.0406832799893;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0407474030041;RORA:-0.0431192100346;NRF1:-0.0605454100639;HIF1A:-0.0616932220067;ZIC1..3:-0.0626221736363;MYBL2:-0.0653897856758;ZBTB6:-0.0690198385521;REST:-0.0737451642429;HNF1A:-0.0776757592836;HNF4A_NR2F1,2:-0.0869107751916;RXRA_VDR{dimer}:-0.10516221742;NKX3-1:-0.108502722968;ESRRA:-0.108775508397;GLI1..3:-0.1115663927;MTE{core}:-0.129943017568;RFX2..5_RFXANK_RFXAP:-0.175647905226;AHR_ARNT_ARNT2:-0.187648043132;EP300:-0.189832461578;NR1H4:-0.198144296551;PAX5:-0.198858301269;PITX1..3:-0.201527061448;POU2F1..3:-0.204080169424;TOPORS:-0.204746401967;FOXN1:-0.210354192564;FOXP1:-0.217889301854;FOS_FOS{B,L1}_JUN{B,D}:-0.222025527745;BACH2:-0.225422778834;ZFP161:-0.23367902796;HMX1:-0.237289415103;STAT1,3:-0.241169575967;NR6A1:-0.241911792071;SOX2:-0.250731424322;TFCP2:-0.255926068681;POU1F1:-0.257880408195;SMAD1..7,9:-0.27748966008;HLF:-0.27919739495;ALX4:-0.284970849387;SOX{8,9,10}:-0.288166125991;NFE2L2:-0.301784082768;HIC1:-0.31081270738;NFIL3:-0.328224841802;NKX6-1,2:-0.329083356348;FOSL2:-0.33524955415;NFE2L1:-0.339446677953;NHLH1,2:-0.352380916584;KLF4:-0.353810537718;CEBPA,B_DDIT3:-0.359525375118;PAX3,7:-0.374368351391;PRRX1,2:-0.375433992045;SOX17:-0.377431822072;GTF2I:-0.389530181757;LHX3,4:-0.389700929534;NFKB1_REL_RELA:-0.391928522431;CUX2:-0.409425898112;MEF2{A,B,C,D}:-0.420341669771;NKX2-3_NKX2-5:-0.422163650208;PAX4:-0.431268991412;EBF1:-0.434900485871;OCT4_SOX2{dimer}:-0.441509533424;ATF5_CREB3:-0.44318779552;AR:-0.44627733228;NKX3-2:-0.447517907681;FOX{I1,J2}:-0.449277087668;ELF1,2,4:-0.451636200822;FOX{F1,F2,J1}:-0.454922856243;MYB:-0.456844744184;ADNP_IRX_SIX_ZHX:-0.463718408353;SPI1:-0.464394949425;STAT2,4,6:-0.467494579329;PRDM1:-0.468567758834;FOXD3:-0.475404788331;NFIX:-0.480599600625;HOX{A5,B5}:-0.481621855165;PDX1:-0.487928844622;FOXA2:-0.505611774583;SREBF1,2:-0.505632364864;PATZ1:-0.520087144957;BREu{core}:-0.520444227492;FOXL1:-0.520475745998;NKX2-2,8:-0.536138070561;MAZ:-0.538531081141;MYFfamily:-0.544783161207;SPIB:-0.586151698725;ATF2:-0.593559789293;FOXP3:-0.595681411991;NFE2:-0.597291801755;TFAP4:-0.597508779242;GFI1B:-0.614699883114;HMGA1,2:-0.624156754357;FOXO1,3,4:-0.633248582949;NR3C1:-0.649928367143;EN1,2:-0.657530263555;GATA6:-0.657621778994;RUNX1..3:-0.66380748252;TLX2:-0.697124377251;POU5F1:-0.713172136687;LEF1_TCF7_TCF7L1,2:-0.744551124128;MZF1:-0.772941828891;PAX1,9:-0.783590285545;XBP1:-0.785388251705;JUN:-0.797615893641;STAT5{A,B}:-0.828087121237;CREB1:-0.83941416578;T:-0.848391486712;ETS1,2:-0.848505898431;TAL1_TCF{3,4,12}:-0.872216031173;ATF6:-0.887927360623;CRX:-0.892655294227;SRF:-1.00603547173;MAFB:-1.01622454701;PBX1:-1.02526586264;VSX1,2:-1.03040096452;POU3F1..4:-1.04090452812;GZF1:-1.08558500338;NANOG{mouse}:-1.12528751909;NFATC1..3:-1.14924981448;TGIF1:-1.17169069045;PAX6:-1.19411191806;DBP:-1.29097786669;DMAP1_NCOR{1,2}_SMARC:-1.32819253541;NANOG:-1.36323848812;HAND1,2:-1.52665476114;ZNF238:-1.58267125966;HBP1_HMGB_SSRP1_UBTF:-2.26861890912 | |top_motifs=bHLH_family:1.98943527585;FOXM1:1.78738261314;BPTF:1.22102914707;PPARG:1.20865318948;ELK1,4_GABP{A,B1}:1.15919530406;TEF:1.06581687462;UFEwm:1.0409697915;RBPJ:0.990770183954;AIRE:0.955792925584;TBX4,5:0.931028809271;SNAI1..3:0.918776646226;TP53:0.867706145968;HSF1,2:0.847875626735;HOX{A6,A7,B6,B7}:0.778339765277;SP1:0.728701207614;ZEB1:0.717005757693;GCM1,2:0.714733158849;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.586976416793;ZNF143:0.536468727551;ZBTB16:0.530066173381;IRF7:0.528714639802;ZNF148:0.512830195938;MYOD1:0.488856304459;ARID5B:0.481947212111;IRF1,2:0.477412191836;TBP:0.466898630356;RXR{A,B,G}:0.438003021885;POU6F1:0.418102650262;HOXA9_MEIS1:0.400516318735;ONECUT1,2:0.393182585203;IKZF2:0.387526553083;HES1:0.355826521261;TEAD1:0.348798985136;CDC5L:0.340836186694;EGR1..3:0.31563215683;NKX2-1,4:0.30275267797;TFAP2{A,C}:0.283893705718;E2F1..5:0.255785831026;PAX8:0.250993399711;CDX1,2,4:0.239432020173;IKZF1:0.233571809427;FOXQ1:0.232057911659;ZNF423:0.220307511104;TFAP2B:0.188619552388;GFI1:0.17239292156;PAX2:0.167601270485;ZNF384:0.159566731729;SPZ1:0.158953210003;RFX1:0.142892476891;GTF2A1,2:0.124488069792;MTF1:0.118299258996;XCPE1{core}:0.108885550288;LMO2:0.101775209533;HOX{A4,D4}:0.0972319181412;RREB1:0.0895140174214;EVI1:0.0888533741372;NFY{A,B,C}:0.0726401597007;YY1:0.0667134156744;FOX{D1,D2}:0.0640947394499;TLX1..3_NFIC{dimer}:0.0514983594194;SOX5:0.0504765928622;MED-1{core}:0.0362594342617;ATF4:0.0315321532756;ESR1:0.029221442197;ALX1:0.0276084804007;GATA4:0.00503727166615;NR5A1,2:-0.00869442045471;TFDP1:-0.0406832799893;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0407474030041;RORA:-0.0431192100346;NRF1:-0.0605454100639;HIF1A:-0.0616932220067;ZIC1..3:-0.0626221736363;MYBL2:-0.0653897856758;ZBTB6:-0.0690198385521;REST:-0.0737451642429;HNF1A:-0.0776757592836;HNF4A_NR2F1,2:-0.0869107751916;RXRA_VDR{dimer}:-0.10516221742;NKX3-1:-0.108502722968;ESRRA:-0.108775508397;GLI1..3:-0.1115663927;MTE{core}:-0.129943017568;RFX2..5_RFXANK_RFXAP:-0.175647905226;AHR_ARNT_ARNT2:-0.187648043132;EP300:-0.189832461578;NR1H4:-0.198144296551;PAX5:-0.198858301269;PITX1..3:-0.201527061448;POU2F1..3:-0.204080169424;TOPORS:-0.204746401967;FOXN1:-0.210354192564;FOXP1:-0.217889301854;FOS_FOS{B,L1}_JUN{B,D}:-0.222025527745;BACH2:-0.225422778834;ZFP161:-0.23367902796;HMX1:-0.237289415103;STAT1,3:-0.241169575967;NR6A1:-0.241911792071;SOX2:-0.250731424322;TFCP2:-0.255926068681;POU1F1:-0.257880408195;SMAD1..7,9:-0.27748966008;HLF:-0.27919739495;ALX4:-0.284970849387;SOX{8,9,10}:-0.288166125991;NFE2L2:-0.301784082768;HIC1:-0.31081270738;NFIL3:-0.328224841802;NKX6-1,2:-0.329083356348;FOSL2:-0.33524955415;NFE2L1:-0.339446677953;NHLH1,2:-0.352380916584;KLF4:-0.353810537718;CEBPA,B_DDIT3:-0.359525375118;PAX3,7:-0.374368351391;PRRX1,2:-0.375433992045;SOX17:-0.377431822072;GTF2I:-0.389530181757;LHX3,4:-0.389700929534;NFKB1_REL_RELA:-0.391928522431;CUX2:-0.409425898112;MEF2{A,B,C,D}:-0.420341669771;NKX2-3_NKX2-5:-0.422163650208;PAX4:-0.431268991412;EBF1:-0.434900485871;OCT4_SOX2{dimer}:-0.441509533424;ATF5_CREB3:-0.44318779552;AR:-0.44627733228;NKX3-2:-0.447517907681;FOX{I1,J2}:-0.449277087668;ELF1,2,4:-0.451636200822;FOX{F1,F2,J1}:-0.454922856243;MYB:-0.456844744184;ADNP_IRX_SIX_ZHX:-0.463718408353;SPI1:-0.464394949425;STAT2,4,6:-0.467494579329;PRDM1:-0.468567758834;FOXD3:-0.475404788331;NFIX:-0.480599600625;HOX{A5,B5}:-0.481621855165;PDX1:-0.487928844622;FOXA2:-0.505611774583;SREBF1,2:-0.505632364864;PATZ1:-0.520087144957;BREu{core}:-0.520444227492;FOXL1:-0.520475745998;NKX2-2,8:-0.536138070561;MAZ:-0.538531081141;MYFfamily:-0.544783161207;SPIB:-0.586151698725;ATF2:-0.593559789293;FOXP3:-0.595681411991;NFE2:-0.597291801755;TFAP4:-0.597508779242;GFI1B:-0.614699883114;HMGA1,2:-0.624156754357;FOXO1,3,4:-0.633248582949;NR3C1:-0.649928367143;EN1,2:-0.657530263555;GATA6:-0.657621778994;RUNX1..3:-0.66380748252;TLX2:-0.697124377251;POU5F1:-0.713172136687;LEF1_TCF7_TCF7L1,2:-0.744551124128;MZF1:-0.772941828891;PAX1,9:-0.783590285545;XBP1:-0.785388251705;JUN:-0.797615893641;STAT5{A,B}:-0.828087121237;CREB1:-0.83941416578;T:-0.848391486712;ETS1,2:-0.848505898431;TAL1_TCF{3,4,12}:-0.872216031173;ATF6:-0.887927360623;CRX:-0.892655294227;SRF:-1.00603547173;MAFB:-1.01622454701;PBX1:-1.02526586264;VSX1,2:-1.03040096452;POU3F1..4:-1.04090452812;GZF1:-1.08558500338;NANOG{mouse}:-1.12528751909;NFATC1..3:-1.14924981448;TGIF1:-1.17169069045;PAX6:-1.19411191806;DBP:-1.29097786669;DMAP1_NCOR{1,2}_SMARC:-1.32819253541;NANOG:-1.36323848812;HAND1,2:-1.52665476114;ZNF238:-1.58267125966;HBP1_HMGB_SSRP1_UBTF:-2.26861890912 | ||
|xref= | |||
}} | }} | ||
Revision as of 19:33, 10 August 2017
| Name: | gastric adenocarcinoma cell line:MKN1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11737 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11737
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11737
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.968 |
| 10 | 10 | 0.74 |
| 100 | 100 | 0.186 |
| 101 | 101 | 0.134 |
| 102 | 102 | 0.52 |
| 103 | 103 | 0.555 |
| 104 | 104 | 0.883 |
| 105 | 105 | 0.59 |
| 106 | 106 | 0.586 |
| 107 | 107 | 0.175 |
| 108 | 108 | 0.272 |
| 109 | 109 | 0.0464 |
| 11 | 11 | 0.274 |
| 110 | 110 | 0.437 |
| 111 | 111 | 0.315 |
| 112 | 112 | 0.351 |
| 113 | 113 | 9.21012e-5 |
| 114 | 114 | 0.358 |
| 115 | 115 | 0.114 |
| 116 | 116 | 0.627 |
| 117 | 117 | 0.398 |
| 118 | 118 | 0.289 |
| 119 | 119 | 0.509 |
| 12 | 12 | 0.118 |
| 120 | 120 | 0.358 |
| 121 | 121 | 0.937 |
| 122 | 122 | 0.783 |
| 123 | 123 | 0.0173 |
| 124 | 124 | 0.0534 |
| 125 | 125 | 0.11 |
| 126 | 126 | 0.302 |
| 127 | 127 | 0.49 |
| 128 | 128 | 0.0124 |
| 129 | 129 | 0.266 |
| 13 | 13 | 0.227 |
| 130 | 130 | 0.533 |
| 131 | 131 | 0.0243 |
| 132 | 132 | 0.326 |
| 133 | 133 | 0.255 |
| 134 | 134 | 0.143 |
| 135 | 135 | 0.0619 |
| 136 | 136 | 0.00684 |
| 137 | 137 | 0.00738 |
| 138 | 138 | 0.432 |
| 139 | 139 | 0.828 |
| 14 | 14 | 0.127 |
| 140 | 140 | 0.533 |
| 141 | 141 | 0.639 |
| 142 | 142 | 0.562 |
| 143 | 143 | 0.422 |
| 144 | 144 | 0.922 |
| 145 | 145 | 0.142 |
| 146 | 146 | 0.418 |
| 147 | 147 | 0.992 |
| 148 | 148 | 0.478 |
| 149 | 149 | 0.561 |
| 15 | 15 | 0.52 |
| 150 | 150 | 0.441 |
| 151 | 151 | 0.635 |
| 152 | 152 | 0.0368 |
| 153 | 153 | 0.0506 |
| 154 | 154 | 0.31 |
| 155 | 155 | 0.219 |
| 156 | 156 | 0.754 |
| 157 | 157 | 0.854 |
| 158 | 158 | 0.333 |
| 159 | 159 | 0.123 |
| 16 | 16 | 0.72 |
| 160 | 160 | 0.597 |
| 161 | 161 | 0.372 |
| 162 | 162 | 0.577 |
| 163 | 163 | 0.807 |
| 164 | 164 | 0.732 |
| 165 | 165 | 0.837 |
| 166 | 166 | 0.432 |
| 167 | 167 | 0.519 |
| 168 | 168 | 0.961 |
| 169 | 169 | 0.156 |
| 17 | 17 | 0.934 |
| 18 | 18 | 0.984 |
| 19 | 19 | 0.406 |
| 2 | 2 | 0.471 |
| 20 | 20 | 0.486 |
| 21 | 21 | 0.343 |
| 22 | 22 | 0.976 |
| 23 | 23 | 0.18 |
| 24 | 24 | 0.595 |
| 25 | 25 | 0.951 |
| 26 | 26 | 0.331 |
| 27 | 27 | 0.521 |
| 28 | 28 | 0.718 |
| 29 | 29 | 0.0171 |
| 3 | 3 | 0.406 |
| 30 | 30 | 0.944 |
| 31 | 31 | 0.276 |
| 32 | 32 | 0.201 |
| 33 | 33 | 0.235 |
| 34 | 34 | 0.207 |
| 35 | 35 | 0.133 |
| 36 | 36 | 0.146 |
| 37 | 37 | 0.0469 |
| 38 | 38 | 0.888 |
| 39 | 39 | 0.675 |
| 4 | 4 | 0.523 |
| 40 | 40 | 0.885 |
| 41 | 41 | 0.015 |
| 42 | 42 | 0.359 |
| 43 | 43 | 0.458 |
| 44 | 44 | 0.0549 |
| 45 | 45 | 0.87 |
| 46 | 46 | 0.545 |
| 47 | 47 | 0.979 |
| 48 | 48 | 0.877 |
| 49 | 49 | 0.303 |
| 5 | 5 | 0.253 |
| 50 | 50 | 0.977 |
| 51 | 51 | 0.847 |
| 52 | 52 | 0.169 |
| 53 | 53 | 0.0879 |
| 54 | 54 | 0.604 |
| 55 | 55 | 0.0873 |
| 56 | 56 | 0.973 |
| 57 | 57 | 0.7 |
| 58 | 58 | 0.493 |
| 59 | 59 | 0.467 |
| 6 | 6 | 0.425 |
| 60 | 60 | 0.523 |
| 61 | 61 | 0.347 |
| 62 | 62 | 0.634 |
| 63 | 63 | 0.772 |
| 64 | 64 | 0.809 |
| 65 | 65 | 0.989 |
| 66 | 66 | 0.34 |
| 67 | 67 | 0.953 |
| 68 | 68 | 0.534 |
| 69 | 69 | 0.235 |
| 7 | 7 | 0.69 |
| 70 | 70 | 0.648 |
| 71 | 71 | 0.506 |
| 72 | 72 | 0.364 |
| 73 | 73 | 0.00622 |
| 74 | 74 | 0.271 |
| 75 | 75 | 0.0782 |
| 76 | 76 | 0.0936 |
| 77 | 77 | 0.743 |
| 78 | 78 | 0.654 |
| 79 | 79 | 0.981 |
| 8 | 8 | 0.541 |
| 80 | 80 | 0.113 |
| 81 | 81 | 0.219 |
| 82 | 82 | 0.722 |
| 83 | 83 | 0.453 |
| 84 | 84 | 0.112 |
| 85 | 85 | 0.442 |
| 86 | 86 | 0.078 |
| 87 | 87 | 0.811 |
| 88 | 88 | 0.947 |
| 89 | 89 | 0.247 |
| 9 | 9 | 0.233 |
| 90 | 90 | 0.124 |
| 91 | 91 | 0.184 |
| 92 | 92 | 0.0862 |
| 93 | 93 | 0.53 |
| 94 | 94 | 0.138 |
| 95 | 95 | 0.4 |
| 96 | 96 | 0.424 |
| 97 | 97 | 0.742 |
| 98 | 98 | 0.399 |
| 99 | 99 | 0.394 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11737
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102384 MKN-1 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0002178 (epithelial cell of stomach)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
299 (adenocarcinoma)
3119 (gastrointestinal system cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000945 (stomach)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010039 (food storage organ)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)
0001041 (foregut)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)
0100787 (gastric cancer cell line sample)
0102380 (gastric adenocarcinoma cell line sample)
0102384 (MKN-1 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
