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{{f5samples
{{f5samples
|id=FF:10728-110A8
|DRA_sample_Accession=CAGE@SAMD00005035
|name=neuroepithelioma cell line:SK-N-MC
|accession_numbers=CAGE;DRX007967;DRR008839;DRZ000264;DRZ001649;DRZ011614;DRZ012999
|sample_id=10728
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000013,UBERON:0003714,UBERON:0000479,UBERON:0004121,UBERON:0011216,UBERON:0002410,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0000010,UBERON:0001016
|rna_tube_id=110A8
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000333,CL:0000003,CL:0000548,CL:0002321,CL:0000219,CL:0000255
|rna_box=110
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:3093,DOID:0050687,DOID:171,DOID:3095,DOID:1192,DOID:2994,DOID:1115,DOID:169,DOID:3193,DOID:962
|rna_position=A8
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100400,FF:0100932,FF:0102912,FF:0104785,FF:0102914
|sample_cell_lot=
|comment=
|sample_cell_catalog=HTB-10
|created_by=
|sample_company=ATCC
|creation_date=
|rna_lot_number=
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
|def=
|sample_strain=
|expression_enrichment_score=chr6:50786591..50786614,+!p1@TFAP2B!2.58!381.55!TFAP2B;;chr7:19157248..19157268,-!p1@TWIST1!2.31!537.98!TWIST1;;chr6:50786547..50786564,+!p3@TFAP2B!2.11!127.37!TFAP2B;;chr6:50786571..50786590,+!p2@TFAP2B!2.08!118.43!TFAP2B;;chr20:39317868..39317884,-!p1@MAFB!2.07!1300.53!MAFB;;chr6:50786509..50786527,+!p5@TFAP2B!1.95!88.27!TFAP2B;;chr20:21494684..21494708,-!p1@NKX2-2!1.93!83.80!NKX2-2;;chr1:197886461..197886558,+!p1@LHX9!1.93!83.24!LHX9;;chr19:31840130..31840160,-!p2@TSHZ3!1.85!106.14!TSHZ3;;chr1:25256756..25256774,-!p1@RUNX3!1.77!106.70!RUNX3;;chr9:132427883..132427951,+!p2@PRRX2!1.77!58.10!PRRX2;;chr13:100634031..100634045,+!p1@ZIC2!1.62!40.78!ZIC2;;chr2:5832508..5832524,+!p1@SOX11!1.60!38.55!SOX11;;chr10:131762504..131762555,-!p1@EBF3!1.58!36.87!EBF3;;chr6:99282438..99282457,+!p2@POU3F2!1.58!36.87!POU3F2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.57!35.75!ZBED1;;chr8:37553261..37553282,+!p2@ZNF703!1.56!255.30!ZNF703;;chr3:181429704..181429722,+!p1@SOX2!1.52!31.84!SOX2;;chr6:50786057..50786069,+!p9@TFAP2B!1.49!29.61!TFAP2B;;chr4:174451370..174451387,-!p1@HAND2!1.46!27.93!HAND2;;chr6:19837592..19837621,+!p1@ID4!1.44!157.54!ID4;;chrX:30327504..30327509,-!p1@NR0B1!1.44!26.81!NR0B1;;chr19:50432453..50432468,+!p1@ATF5!1.43!1383.20!ATF5;;chr20:42543441..42543497,+!p1@TOX2!1.41!107.26!TOX2;;chr3:128212033..128212051,-!p1@GATA2!1.40!24.02!GATA2;;chr2:239148671..239148686,-!p1@HES6!1.39!84.91!HES6;;chr8:65492915..65492932,+!p1@BHLHE22!1.39!23.46!BHLHE22;;chr2:223163706..223163730,-!p1@PAX3!1.37!22.35!PAX3;;chr6:10415276..10415341,-!p2@TFAP2A!1.36!26.81!TFAP2A;;chr6:99282475..99282501,+!p1@POU3F2!1.36!21.79!POU3F2;;chr8:106330656..106330684,+!p1@ZFPM2!1.34!53.63!ZFPM2;;chr2:66662281..66662308,+!p1@MEIS1!1.32!68.15!MEIS1;;chr17:46806419..46806438,-!p4@HOXB13!1.31!19.55!HOXB13;;chr20:42295745..42295765,+!p1@MYBL2!1.29!290.50!MYBL2;;chr8:86089417..86089440,+!p2@E2F5!1.29!36.31!E2F5;;chr7:121944689..121944705,-!p2@FEZF1!1.28!17.88!FEZF1;;chr15:57511609..57511651,+!p2@TCF12!1.26!29.05!TCF12;;chr19:49864746..49864780,-!p2@TEAD2!1.26!23.46!TEAD2;;chr14:76842457..76842494,+!p1@ESRRB!1.26!17.32!ESRRB;;chr17:48072574..48072597,-!p1@DLX3!1.26!17.32!DLX3;;chr6:50789717..50789729,+!p4@TFAP2B!1.26!17.32!TFAP2B;;chr7:121944796..121944814,-!p1@FEZF1!1.25!16.76!FEZF1;;chr17:46806035..46806059,-!p2@HOXB13!1.25!16.76!HOXB13;;chr13:100623375..100623425,-!p1@ZIC5!1.25!16.76!ZIC5;;chrX:25034067..25034088,-!p1@ARX!1.25!16.76!ARX;;chr3:128206762..128206781,-!p2@GATA2!1.24!99.44!GATA2;;chr8:37553292..37553317,+!p1@ZNF703!1.23!368.71!ZNF703;;chr20:42543506..42543549,+!p2@TOX2!1.23!38.55!TOX2;;chr6:10412600..10412637,-!p1@TFAP2A!1.23!26.26!TFAP2A;;chr9:132427972..132428056,+!p1@PRRX2!1.23!20.67!PRRX2;;chr7:19157043..19157088,-!p2@TWIST1!1.22!38.55!TWIST1;;chr22:19748231..19748317,+!p1@TBX1!1.22!15.64!TBX1;;chr6:50786479..50786490,+!p6@TFAP2B!1.21!15.08!TFAP2B;;chr1:110613276..110613299,-!p2@ALX3!1.21!15.08!ALX3;;chr1:33721873..33721898,+!p3@ZNF362!1.19!27.93!ZNF362;;chr7:113726357..113726443,+!p1@FOXP2!1.19!25.14!FOXP2;;chr6:50786529..50786540,+!p8@TFAP2B!1.18!13.97!TFAP2B;;chr9:1050331..1050363,+!p1@DMRT2!1.18!13.97!DMRT2;;chr1:18957333..18957375,+!p1@PAX7!1.18!13.97!PAX7;;chr20:21494654..21494678,-!p2@NKX2-2!1.18!13.97!NKX2-2;;chr11:16629369..16629392,-!p5@SOX6!1.18!13.97!SOX6;;chr12:54785074..54785122,-!p2@ZNF385A!1.17!21.23!ZNF385A;;chr6:50786631..50786635,+!p11@TFAP2B!1.16!13.41!TFAP2B;;chr17:46806067..46806097,-!p1@HOXB13!1.16!13.41!HOXB13;;chr2:176969097..176969109,+!p3@HOXD11!1.16!13.41!HOXD11;;chr2:5832493..5832507,+!p2@SOX11!1.16!13.41!SOX11;;chr14:99738138..99738163,-!p1@BCL11B!1.14!12.85!BCL11B;;chr20:21378152..21378169,-!p1@NKX2-4!1.14!12.85!NKX2-4;;chr11:61520075..61520136,+!p1@C11orf9!1.13!26.26!C11orf9;;chr8:106330696..106330719,+!p2@ZFPM2!1.12!15.64!ZFPM2;;chr13:100634130..100634143,+!p3@ZIC2!1.12!12.29!ZIC2;;chr13:79177703..79177729,-!p2@POU4F1!1.12!12.29!POU4F1;;chr4:4861385..4861398,+!p1@MSX1!1.10!34.64!MSX1;;chr1:38512457..38512474,-!p1@POU3F1!1.10!12.85!POU3F1;;chr18:56940611..56940660,-!p1@RAX!1.10!11.73!RAX;;chr6:34205372..34205412,+!p5@HMGA1!1.09!56.98!HMGA1;;chr8:77593474..77593612,+!p1@ZFHX4!1.09!48.04!ZFHX4;;chr13:100634004..100634025,+!p2@ZIC2!1.09!11.17!ZIC2;;chr1:18958059..18958081,+!p6@PAX7!1.09!11.17!PAX7;;chr11:120107344..120107351,+!p1@POU2F3!1.08!13.41!POU2F3;;chr20:32274179..32274213,-!p1@E2F1!1.07!72.07!E2F1;;chr8:145669791..145669834,-!p1@TONSL!1.06!30.73!TONSL;;chr5:2751762..2751784,-!p1@IRX2!1.06!10.61!IRX2;;chr11:16629630..16629643,-!p20@SOX6!1.06!10.61!SOX6;;chr11:31832807..31832823,-!p4@PAX6!1.06!10.61!PAX6;;chr20:42295713..42295738,+!p2@MYBL2!1.05!61.45!MYBL2;;chr7:149470641..149470694,-!p1@ZNF467!1.04!45.81!ZNF467;;chr17:38465413..38465438,+!p5@RARA!1.04!16.20!RARA;;chr2:176969179..176969226,+!p2@HOXD11!1.04!10.06!HOXD11;;chr1:110613238..110613272,-!p1@ALX3!1.04!10.06!ALX3;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!1.03!21.23!SOHLH2;;chrX:84498989..84499003,+!p1@ZNF711!1.03!13.41!ZNF711;;chr1:18958008..18958023,+!p2@PAX7!1.02!9.50!PAX7;;chr2:66662249..66662267,+!p2@MEIS1!1.00!35.19!MEIS1;;chr3:181429741..181429767,+!p2@SOX2!1.00!8.94!SOX2;;chr13:79177674..79177701,-!p1@POU4F1!1.00!8.94!POU4F1;;chr17:38465441..38465481,+!p6@RARA!0.98!10.61!RARA;;chr7:148581360..148581425,-!p1@EZH2!0.97!42.46!EZH2;;chr19:31840438..31840470,-!p3@TSHZ3!0.97!10.61!TSHZ3;;chr18:56940663..56940691,-!p2@RAX!0.97!8.38!RAX;;chr6:10415484..10415508,-!p3@TFAP2A!0.97!8.38!TFAP2A;;chr7:19156632..19156652,-!p3@TWIST1!0.97!8.38!TWIST1;;chr20:21494602..21494622,-!p3@NKX2-2!0.97!8.38!NKX2-2;;chr2:145277640..145277771,-!p1@ZEB2!0.95!110.05!ZEB2;;chr19:31840168..31840186,-!p6@TSHZ3!0.95!7.82!TSHZ3;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.95!7.82!HOXC5;;chr19:46800289..46800327,+!p2@HIF3A!0.95!7.82!HIF3A;;chr3:183415558..183415649,+!p1@YEATS2!0.94!214.52!YEATS2;;chr19:31840313..31840380,-!p1@TSHZ3!0.94!20.11!TSHZ3;;chr6:10412392..10412409,-!p4@TFAP2A!0.94!8.94!TFAP2A;;chr17:42297028..42297056,-!p3@UBTF!0.93!31.84!UBTF;;chr1:40915725..40915808,+!p1@ZNF643!0.93!22.90!ZNF643;;chr2:8822176..8822196,+!p1@ID2!0.92!1068.69!ID2;;chr6:20402102..20402152,+!p1@E2F3!0.92!31.28!E2F3;;chr3:141105705..141105770,+!p4@ZBTB38!0.92!8.94!ZBTB38;;chr2:176969228..176969260,+!p1@HOXD11!0.92!7.26!HOXD11;;chr2:176994408..176994492,+!p1@HOXD8!0.92!7.26!HOXD8;;chr2:66662510..66662521,+!p6@MEIS1!0.92!7.26!MEIS1;;chr2:66662797..66662818,+!p10@MEIS1!0.92!7.26!MEIS1;;chr1:18957605..18957623,+!p3@PAX7!0.92!7.26!PAX7;;chr8:11561684..11561751,+!p1@GATA4!0.92!7.26!GATA4;;chr12:85673977..85674015,+!p1@ALX1!0.92!7.26!ALX1;;chr11:8102846..8102892,+!p1@TUB!0.91!10.06!TUB;;chr17:42297092..42297112,-!p11@UBTF!0.90!11.17!UBTF;;chr14:75745523..75745537,+!p1@FOS!0.89!855.84!FOS;;chr16:29817841..29817865,+!p1@MAZ!0.89!153.07!MAZ;;chr12:50479109..50479146,+!p2@SMARCD1!0.89!120.67!SMARCD1;;chr10:118897911..118897974,-!p1@VAX1!0.89!6.70!VAX1;;chr12:54366894..54366922,+!p2@HOXC11!0.89!6.70!HOXC11;;chr12:54366949..54366973,+!p3@HOXC11!0.89!6.70!HOXC11;;chr12:54366975..54367001,+!p1@HOXC11!0.89!6.70!HOXC11;;chr14:99737850..99737852,-!p3@BCL11B!0.89!6.70!BCL11B;;chr2:176957443..176957457,+!p1@HOXD13!0.89!6.70!HOXD13;;chr6:50786414..50786426,+!p7@TFAP2B!0.89!6.70!TFAP2B;;chr6:7107999..7108031,+!p2@RREB1!0.87!35.75!RREB1;;chr5:321810..321877,+!p1@AHRR!0.87!21.23!AHRR;;chr19:49865646..49865718,-!p1@TEAD2!0.86!56.42!TEAD2;;chr1:23857698..23857733,-!p1@E2F2!0.86!11.73!E2F2;;chr2:25475120..25475176,-!p2@DNMT3A!0.85!8.38!DNMT3A;;chr17:46806016..46806029,-!p5@HOXB13!0.85!6.15!HOXB13;;chr18:45935720..45935772,-!p1@ZBTB7C!0.85!6.15!ZBTB7C;;chr11:16629650..16629667,-!p22@SOX6!0.85!6.15!SOX6;;chr11:31832862..31832884,-!p2@PAX6!0.85!6.15!PAX6;;chr13:37494248..37494260,-!p3@SMAD9!0.85!6.15!SMAD9;;chr13:37494275..37494304,-!p2@SMAD9!0.85!6.15!SMAD9;;chr1:18957627..18957640,+!p4@PAX7!0.85!6.15!PAX7;;chr20:21378129..21378142,-!p2@NKX2-4!0.85!6.15!NKX2-4;;chr20:56100179..56100208,-!p1@CTCFL!0.85!6.15!CTCFL;;chr19:11071685..11071798,+!p1@SMARCA4!0.84!180.44!SMARCA4;;chr19:1592714..1592762,-!p1@MBD3!0.84!47.48!MBD3;;chr4:57774042..57774114,+!p1@REST!0.83!151.39!REST;;chr18:77155922..77155939,+!p1@NFATC1!0.83!16.76!NFATC1;;chr18:56530692..56530723,+!p2@ZNF532!0.83!13.97!ZNF532;;chrX:131623932..131623964,-!p7@MBNL3!0.83!8.38!MBNL3;;chr8:128748308..128748324,+!p2@MYC!0.82!167.59!MYC;;chr6:10412576..10412599,-!p5@TFAP2A!0.82!5.59!TFAP2A;;chr17:48046543..48046575,+!p2@DLX4!0.82!5.59!DLX4;;chr2:66662396..66662407,+!p4@MEIS1!0.82!5.59!MEIS1;;chr12:54348655..54348693,+!p1@HOXC12!0.82!5.59!HOXC12;;chr12:54393880..54393962,+!p1@HOXC9!0.82!5.59!HOXC9;;chrX:129402866..129402880,-!p1@ZNF280C!0.81!34.08!ZNF280C;;chr14:21994449..21994524,-!p2@SALL2!0.80!16.76!SALL2;;chr2:172967621..172967637,-!p1@DLX2!0.80!15.08!DLX2;;chr3:33482052..33482116,-!p2@UBP1!0.80!8.38!UBP1;;chr12:115121962..115121987,-!p1@TBX3!0.79!47.48!TBX3;;chr15:85291544..85291598,+!p2@ZNF592!0.79!34.64!ZNF592;;chr9:14314131..14314147,-!p2@NFIB!0.79!31.28!NFIB;;chr14:21994337..21994442,-!p1@SALL2!0.79!15.08!SALL2;;chr1:61548069..61548102,+!p3@NFIA!0.79!13.41!NFIA;;chr2:71127699..71127744,+!p1@VAX2!0.79!11.17!VAX2;;chr1:41827095..41827155,+!p1@FOXO6!0.79!7.26!FOXO6;;chr8:37963028..37963070,+!p1@ASH2L!0.78!88.82!ASH2L;;chr8:86089369..86089408,+!p1@E2F5!0.78!14.52!E2F5;;chr5:150284532..150284549,-!p1@ZNF300!0.78!11.17!ZNF300;;chr8:65492520..65492554,+!p3@BHLHE22!0.78!5.03!BHLHE22;;chr2:176969124..176969155,+!p5@HOXD11!0.78!5.03!HOXD11;;chr4:111544219..111544240,-!p1@PITX2!0.78!5.03!PITX2;;chr17:48045917..48045977,+!p1@DLX4!0.78!5.03!DLX4;;chr17:48046642..48046667,+!p3@DLX4!0.78!5.03!DLX4;;chr5:174151553..174151610,+!p1@MSX2!0.76!8.38!MSX2;;chr16:29817789..29817838,+!p2@MAZ!0.75!69.83!MAZ;;chr1:14026671..14026705,+!p2@PRDM2!0.75!30.73!PRDM2;;chr5:132299339..132299359,-!p4@AFF4!0.75!24.02!AFF4;;chr19:1652555..1652568,-!p2@TCF3!0.75!20.67!TCF3;;chr5:134369905..134369972,-!p1@PITX1!0.74!7.26!PI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MARCA2!0.28!20.67!SMARCA2;;chr1:151032860..151032918,+!p1@MLLT11!0.28!20.11!MLLT11;;chr14:90085458..90085557,-!p1@FOXN3!0.28!17.32!FOXN3;;chr14:64970494..64970578,-!p1@ZBTB25!0.28!16.76!ZBTB25;;chr18:53255415..53255491,-!p1@TCF4!0.28!13.97!TCF4;;chr9:125667518..125667588,-!p1@RC3H2!0.28!10.61!RC3H2;;chr1:151431647..151431669,-!p2@POGZ!0.28!7.82!POGZ;;chr19:2944907..2944981,-!p1@ZNF77!0.28!6.70!ZNF77;;chr18:74534479..74534551,+!p1@ZNF236!0.28!4.47!ZNF236;;chr19:47615426..47615439,-!p5@ZC3H4!0.28!3.35!ZC3H4;;chr19:52408285..52408310,-!p3@ZNF649!0.28!3.35!ZNF649;;chr3:14989050..14989069,+!p2@NR2C2!0.28!3.35!NR2C2;;chr16:31085058..31085078,-!p2@ZNF668!0.28!2.79!ZNF668;;chr5:76383133..76383186,-!p2@ZBED3!0.28!2.79!ZBED3;;chr15:66994615..66994630,+!p3@SMAD6!0.28!1.68!SMAD6;;chr17:42297226..42297246,-!p14@UBTF!0.28!1.68!UBTF;;chr19:58874112..58874125,-!p1@ZNF497,p5@A1BG!0.28!1.68!ZNF497;;chr20:48807648..48807671,+!p9@CEBPB!0.28!1.68!CEBPB;;chr5:43121586..43121601,+!p10@ZNF131!0.28!1.12!ZNF131;;chr7:1577111..1577132,+!p4@MAFK!0.28!1.12!MAFK;;chr8:41909982..41910009,-!p2@KAT6A!0.28!1.12!KAT6A;;chr15:42783229..42783234,-!p8@ZFP106!0.28!1.12!ZFP106;;chr12:3068957..3068978,+!p6@TEAD4!0.28!1.12!TEAD4;;chr2:70314601..70314622,+!p1@PCBP1!0.27!389.93!PCBP1;;chr22:24129138..24129201,+!p1@SMARCB1!0.27!84.36!SMARCB1;;chr11:118307179..118307223,+!p1@MLL!0.27!51.40!MLL;;chr17:73780879..73780963,+!p1@UNK!0.27!27.93!UNK;;chr6:32157947..32157992,-!p1@PBX2!0.27!27.93!PBX2;;chr22:21356016..21356105,-!p1@THAP7!0.27!26.26!THAP7;;chr11:64073022..64073056,+!p1@ESRRA!0.27!19.55!ESRRA;;chr1:202777592..202777616,-!p2@KDM5B!0.27!17.88!KDM5B;;chr1:247095236..247095283,-!p2@AHCTF1!0.27!17.32!AHCTF1;;chr17:40897043..40897087,-!p1@EZH1!0.27!14.52!EZH1;;chr19:57901208..57901280,+!p1@ZNF548!0.27!12.85!ZNF548;;chr6:35227480..35227546,+!p1@ZNF76!0.27!10.61!ZNF76;;chr3:129158854..129158883,-!p3@MBD4!0.27!7.82!MBD4;;chr9:137218341..137218361,+!p2@RXRA!0.27!6.15!RXRA;;chr19:44439420..44439447,-!p1@ZNF45!0.27!5.59!ZNF45;;chr16:71918033..71918101,-!p1@ZNF821!0.27!5.59!ZNF821;;chr1:173837488..173837526,+!p1@ZBTB37!0.27!5.03!ZBTB37;;chr1:164528384..164528409,+!p3@PBX1!0.27!4.47!PBX1;;chr6:134274322..134274342,+!p3@TBPL1!0.27!4.47!TBPL1;;chr12:19592493..19592524,+!p3@AEBP2!0.27!3.91!AEBP2;;chr19:56904880..56904919,-!p1@ZNF582!0.27!3.35!ZNF582;;chr17:61919985..61920012,-!p3@SMARCD2!0.27!3.35!SMARCD2;;chr19:8578683..8578750,-!p2@ZNF414!0.27!2.79!ZNF414;;chr19:925727..925784,+!p3@ARID3A!0.27!2.79!ARID3A;;chr19:9879350..9879419,-!p2@ZNF846!0.27!2.79!ZNF846;;chr20:49547766..49547785,-!p5@ADNP!0.27!2.79!ADNP;;chr7:64254834..64254854,+!p2@ZNF138!0.27!2.23!ZNF138;;chr9:102584159..102584174,+!p2@NR4A3!0.27!2.23!NR4A3;;chr19:13134457..13134462,+!p5@NFIX!0.27!2.23!NFIX;;chr19:13134772..13134822,+!p2@NFIX!0.27!1.68!NFIX;;chr4:26322373..26322393,+!p4@RBPJ!0.27!1.68!RBPJ;;chr10:94449649..94449664,+!p3@HHEX!0.27!1.68!HHEX;;chr14:75894391..75894435,+!p2@JDP2!0.27!1.12!JDP2;;chr1:35644482..35644486,-!p11@SFPQ!0.27!1.12!SFPQ;;chr2:231084820..231084836,-!p5@SP110!0.27!1.12!SP110;;chr8:86089627..86089653,+!p3@E2F5!0.27!1.12!E2F5;;chrX:153363125..153363182,-!p1@MECP2!0.26!43.57!MECP2;;chr17:65821603..65821635,+!p1@BPTF!0.26!27.37!BPTF;;chr12:132628963..132629027,+!p1@NOC4L!0.26!23.46!NOC4L;;chr1:151431909..151431987,-!p1@POGZ!0.26!18.99!POGZ;;chr1:247495140..247495177,-!p1@ZNF496!0.26!17.32!ZNF496;;chr19:1863591..1863611,-!p2@KLF16!0.26!15.08!KLF16;;chr6:109804412..109804458,-!p1@ZBTB24!0.26!13.97!ZBTB24;;chr12:108154891..108154923,-!p1@PRDM4!0.26!13.97!PRDM4;;chr2:113033164..113033219,+!p1@ZC3H6!0.26!13.41!ZC3H6;;chr2:208394627..208394655,+!p2@CREB1!0.26!13.41!CREB1;;chr9:88969339..88969422,-!p2@ZCCHC6!0.26!12.29!ZCCHC6;;chr1:28995258..28995322,+!p1@GMEB1!0.26!11.73!GMEB1;;
|sample_dev_stage=
|ffid_belonging_in_development=CL:0000133,CL:0000221,UBERON:0002532,UBERON:0006601,UBERON:0010316
|sample_tissue=brain
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=14
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=1.96
|rna_od260/280=2.08
|sample_cell_type=unclassifiable
|sample_cell_line=SK-N-MC
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=neuroepithelioma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=19.20051
|rna_concentration=0.71113
|sample_note=
|profile_hcage=CNhs11853,LSID830,release010,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000133,CL:0000144,CL:0000219,CL:0000220,CL:0000221,CL:0000255,CL:0000333,CL:0000548,CL:0002321
|ancestors_in_anatomy_facet=UBERON:0000010,UBERON:0000013,UBERON:0000061,UBERON:0000073,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0001016,UBERON:0001062,UBERON:0002050,UBERON:0002384,UBERON:0002410,UBERON:0002532,UBERON:0003714,UBERON:0004121,UBERON:0005423
|ancestors_in_disease_facet=DOID:0050686,DOID:0050687,DOID:1115,DOID:1192,DOID:14566,DOID:162,DOID:169,DOID:171,DOID:2994,DOID:3093,DOID:3095,DOID:3193,DOID:4,DOID:962
|sample_description=
|fonse_cell_line=FF:0100400,FF:0100932,FF:0102912
|fonse_cell_line=FF:0100400,FF:0100932,FF:0102912
|fonse_cell_line_closure=FF:0100400,FF:0100932,FF:0102912
|fonse_cell_line_closure=FF:0100400,FF:0100932,FF:0102912
Line 66: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
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|rna_box=110
|rna_catalog_number=
|rna_concentration=0.71113
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=1.96
|rna_od260/280=2.08
|rna_position=A8
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=110A8
|rna_weight_ug=19.20051
|sample_age=14
|sample_category=cell lines
|sample_cell_catalog=HTB-10
|sample_cell_line=SK-N-MC
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=ATCC
|sample_description=
|sample_dev_stage=
|sample_disease=neuroepithelioma
|sample_donor(cell lot)=
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.90252830988778e-269!GO:0043231;intracellular membrane-bound organelle;1.86983865652576e-240!GO:0043227;membrane-bound organelle;1.86983865652576e-240!GO:0043226;organelle;1.73374270085716e-235!GO:0043229;intracellular organelle;4.90525035134867e-235!GO:0044422;organelle part;6.58327298118457e-155!GO:0044446;intracellular organelle part;2.03475047756086e-153!GO:0005737;cytoplasm;1.19424143201545e-146!GO:0005634;nucleus;4.73674646178686e-130!GO:0032991;macromolecular complex;5.06688629853501e-109!GO:0044237;cellular metabolic process;3.23017539126116e-106!GO:0043170;macromolecule metabolic process;4.15807349128873e-106!GO:0044238;primary metabolic process;2.02704046803257e-104!GO:0044444;cytoplasmic part;6.10197973962345e-102!GO:0044428;nuclear part;6.92429607305876e-96!GO:0030529;ribonucleoprotein complex;5.04697394756073e-92!GO:0043233;organelle lumen;3.12985699491202e-86!GO:0031974;membrane-enclosed lumen;3.12985699491202e-86!GO:0003723;RNA binding;3.71304267620537e-84!GO:0043283;biopolymer metabolic process;3.06590281349413e-77!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.46931551784744e-75!GO:0005515;protein binding;8.05135146974161e-75!GO:0010467;gene expression;2.74629301530748e-74!GO:0031981;nuclear lumen;1.83004430900539e-60!GO:0005739;mitochondrion;7.39807334088344e-59!GO:0006396;RNA processing;1.00039491207631e-58!GO:0003676;nucleic acid binding;2.58041556705304e-55!GO:0043234;protein complex;8.28759604017596e-55!GO:0005840;ribosome;1.27213832088455e-53!GO:0006412;translation;1.52521568491411e-49!GO:0016043;cellular component organization and biogenesis;2.46600022448429e-49!GO:0006259;DNA metabolic process;1.72266118631621e-47!GO:0003735;structural constituent of ribosome;2.86119723679293e-46!GO:0016071;mRNA metabolic process;9.10755927952895e-45!GO:0031090;organelle membrane;8.31052937646038e-44!GO:0016070;RNA metabolic process;2.33243805694277e-43!GO:0008380;RNA splicing;8.39427934650577e-41!GO:0033279;ribosomal subunit;1.07331447733766e-40!GO:0006996;organelle organization and biogenesis;3.28919727003269e-40!GO:0019538;protein metabolic process;4.80514171175806e-40!GO:0044429;mitochondrial part;8.33318207666645e-40!GO:0005654;nucleoplasm;3.22728110552311e-39!GO:0031967;organelle envelope;9.87366988761947e-39!GO:0031975;envelope;2.29159097953409e-38!GO:0043228;non-membrane-bound organelle;4.61783283891207e-38!GO:0043232;intracellular non-membrane-bound organelle;4.61783283891207e-38!GO:0033036;macromolecule localization;7.30573331226585e-38!GO:0006397;mRNA processing;8.78919405441637e-38!GO:0015031;protein transport;3.13088561852306e-37!GO:0044267;cellular protein metabolic process;2.71880725960766e-36!GO:0044260;cellular macromolecule metabolic process;4.88328042882906e-36!GO:0007049;cell cycle;2.08763879656635e-35!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.70543304392892e-34!GO:0009059;macromolecule biosynthetic process;2.67170413797825e-34!GO:0044249;cellular biosynthetic process;6.7721754571529e-34!GO:0046907;intracellular transport;1.58941463584191e-33!GO:0008104;protein localization;2.39093874174659e-33!GO:0065003;macromolecular complex assembly;5.25767978813958e-33!GO:0045184;establishment of protein localization;1.6483967251958e-32!GO:0044451;nucleoplasm part;4.22166762313451e-32!GO:0009058;biosynthetic process;1.62074333066525e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.33063306274047e-29!GO:0022607;cellular component assembly;1.25550782751731e-28!GO:0005681;spliceosome;8.25129504365123e-28!GO:0005829;cytosol;3.25061113050952e-27!GO:0000166;nucleotide binding;3.96470560267999e-27!GO:0006886;intracellular protein transport;5.11971792401935e-27!GO:0022402;cell cycle process;2.67493452943924e-26!GO:0006974;response to DNA damage stimulus;2.56834245697733e-25!GO:0005740;mitochondrial envelope;3.09951895870217e-25!GO:0019866;organelle inner membrane;5.71217355833363e-25!GO:0005694;chromosome;7.07129777217851e-25!GO:0000278;mitotic cell cycle;1.0791493336975e-24!GO:0031966;mitochondrial membrane;2.0885513393617e-24!GO:0005730;nucleolus;3.85464808714635e-24!GO:0044445;cytosolic part;2.80496438992128e-23!GO:0051276;chromosome organization and biogenesis;3.44524011492359e-23!GO:0005743;mitochondrial inner membrane;9.7288390009963e-23!GO:0051649;establishment of cellular localization;1.67223025326257e-22!GO:0015934;large ribosomal subunit;2.33490615118323e-22!GO:0006281;DNA repair;3.40813853286699e-22!GO:0051641;cellular localization;6.34868146309229e-22!GO:0006260;DNA replication;7.44022895156728e-22!GO:0016462;pyrophosphatase activity;1.28784171182686e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.02211135999821e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;2.76706039801898e-21!GO:0044455;mitochondrial membrane part;5.10457785230842e-21!GO:0017111;nucleoside-triphosphatase activity;6.86789768791248e-21!GO:0008134;transcription factor binding;1.37817584007828e-20!GO:0006119;oxidative phosphorylation;2.22686934523263e-20!GO:0044427;chromosomal part;2.64752347688038e-20!GO:0022618;protein-RNA complex assembly;3.18778425358539e-20!GO:0016874;ligase activity;6.52107207212936e-20!GO:0022403;cell cycle phase;6.55728877416387e-20!GO:0015935;small ribosomal subunit;1.75131780146059e-19!GO:0009719;response to endogenous stimulus;4.42855019841913e-19!GO:0006512;ubiquitin cycle;4.7924257709649e-19!GO:0006325;establishment and/or maintenance of chromatin architecture;5.30912553149687e-19!GO:0006457;protein folding;5.36703645349577e-19!GO:0000087;M phase of mitotic cell cycle;1.40384116140149e-18!GO:0007067;mitosis;2.91382282597236e-18!GO:0051301;cell division;3.47359713672313e-18!GO:0006323;DNA packaging;4.7729385396608e-18!GO:0006605;protein targeting;1.30790608873241e-17!GO:0031980;mitochondrial lumen;1.37503589369247e-17!GO:0005759;mitochondrial matrix;1.37503589369247e-17!GO:0032553;ribonucleotide binding;1.62346307454346e-17!GO:0032555;purine ribonucleotide binding;1.62346307454346e-17!GO:0006366;transcription from RNA polymerase II promoter;1.84132519137894e-17!GO:0012505;endomembrane system;2.08636590767768e-17!GO:0005524;ATP binding;5.30050271726443e-17!GO:0032559;adenyl ribonucleotide binding;6.66160255486692e-17!GO:0017076;purine nucleotide binding;1.39253104700984e-16!GO:0008135;translation factor activity, nucleic acid binding;1.84526533906236e-16!GO:0044265;cellular macromolecule catabolic process;2.57579669908525e-16!GO:0016887;ATPase activity;4.19731717074082e-16!GO:0005746;mitochondrial respiratory chain;5.57443331411061e-16!GO:0000279;M phase;8.47525764414474e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;9.17389173567257e-16!GO:0030554;adenyl nucleotide binding;1.07917926873102e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.39922284883706e-15!GO:0044257;cellular protein catabolic process;1.40231918270033e-15!GO:0042623;ATPase activity, coupled;1.46399239915566e-15!GO:0019941;modification-dependent protein catabolic process;1.60831673269041e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.60831673269041e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.01813575404224e-15!GO:0006913;nucleocytoplasmic transport;3.49578568911493e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;4.34310991714688e-15!GO:0000375;RNA splicing, via transesterification reactions;4.34310991714688e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.34310991714688e-15!GO:0019222;regulation of metabolic process;4.69522492647192e-15!GO:0043285;biopolymer catabolic process;4.73471469898657e-15!GO:0005761;mitochondrial ribosome;7.32109818906365e-15!GO:0000313;organellar ribosome;7.32109818906365e-15!GO:0050136;NADH dehydrogenase (quinone) activity;8.74014252514261e-15!GO:0003954;NADH dehydrogenase activity;8.74014252514261e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;8.74014252514261e-15!GO:0051169;nuclear transport;9.46740848572262e-15!GO:0042254;ribosome biogenesis and assembly;1.24928543306512e-14!GO:0031965;nuclear membrane;1.69180246316961e-14!GO:0050794;regulation of cellular process;1.73772468997629e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.62367266220958e-14!GO:0043412;biopolymer modification;4.56247245342752e-14!GO:0005635;nuclear envelope;4.87091253151523e-14!GO:0051726;regulation of cell cycle;5.50453260874009e-14!GO:0000074;regulation of progression through cell cycle;6.26673588222532e-14!GO:0051082;unfolded protein binding;6.53934821540278e-14!GO:0044453;nuclear membrane part;1.10325865608866e-13!GO:0009057;macromolecule catabolic process;1.17420343183649e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.39689573677181e-13!GO:0006350;transcription;2.41139885867857e-13!GO:0016568;chromatin modification;3.03190340273456e-13!GO:0016604;nuclear body;3.45520087213722e-13!GO:0003712;transcription cofactor activity;4.21399103717e-13!GO:0006399;tRNA metabolic process;4.32448731713022e-13!GO:0048770;pigment granule;4.56836377499535e-13!GO:0042470;melanosome;4.56836377499535e-13!GO:0017038;protein import;5.30809370116221e-13!GO:0005643;nuclear pore;8.54915069311676e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.20999818159479e-12!GO:0045271;respiratory chain complex I;1.20999818159479e-12!GO:0005747;mitochondrial respiratory chain complex I;1.20999818159479e-12!GO:0003743;translation initiation factor activity;1.23649103364252e-12!GO:0048193;Golgi vesicle transport;1.2501751093768e-12!GO:0005667;transcription factor complex;1.75375933229555e-12!GO:0030163;protein catabolic process;1.87178900087237e-12!GO:0042775;organelle ATP synthesis coupled electron transport;2.12763994273498e-12!GO:0042773;ATP synthesis coupled electron transport;2.12763994273498e-12!GO:0031323;regulation of cellular metabolic process;2.13230833413548e-12!GO:0044432;endoplasmic reticulum part;2.27809673171909e-12!GO:0005783;endoplasmic reticulum;3.05645309482434e-12!GO:0004386;helicase activity;3.29886584970044e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.10162660981575e-12!GO:0006413;translational initiation;4.55731484733122e-12!GO:0006446;regulation of translational initiation;9.12591198252482e-12!GO:0006464;protein modification process;1.06400618843005e-11!GO:0050657;nucleic acid transport;1.31406916204962e-11!GO:0051236;establishment of RNA localization;1.31406916204962e-11!GO:0050658;RNA transport;1.31406916204962e-11!GO:0006403;RNA localization;1.84551658361069e-11!GO:0000502;proteasome complex (sensu Eukaryota);2.01511995499236e-11!GO:0065004;protein-DNA complex assembly;2.30320334438088e-11!GO:0000785;chromatin;2.63426332173415e-11!GO:0008026;ATP-dependent helicase activity;3.43111591962648e-11!GO:0044248;cellular catabolic process;4.58013436645951e-11!GO:0051186;cofactor metabolic process;4.89509229603159e-11!GO:0006333;chromatin assembly or disassembly;5.53814396210111e-11!GO:0010468;regulation of gene expression;6.69627375015944e-11!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.7801410144084e-11!GO:0006261;DNA-dependent DNA replication;7.02147896983845e-11!GO:0043687;post-translational protein modification;7.722253270687e-11!GO:0046930;pore complex;1.07505343966194e-10!GO:0032774;RNA biosynthetic process;1.65767030535652e-10!GO:0008639;small protein conjugating enzyme activity;1.79820276484505e-10!GO:0050789;regulation of biological process;2.01109357651586e-10!GO:0005794;Golgi apparatus;2.07776798838852e-10!GO:0008565;protein transporter activity;2.26734670018269e-10!GO:0016607;nuclear speck;2.28278115740664e-10!GO:0006351;transcription, DNA-dependent;2.45650094711839e-10!GO:0004842;ubiquitin-protein ligase activity;3.31427242847282e-10!GO:0006364;rRNA processing;3.68342284114026e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.10471048917379e-10!GO:0019787;small conjugating protein ligase activity;5.94786523020454e-10!GO:0015630;microtubule cytoskeleton;5.95394672592813e-10!GO:0043566;structure-specific DNA binding;6.31335175351387e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.99850440393955e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.59039788250557e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;8.89681398089493e-10!GO:0004812;aminoacyl-tRNA ligase activity;8.89681398089493e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;8.89681398089493e-10!GO:0006357;regulation of transcription from RNA polymerase II promoter;9.6861493173701e-10!GO:0016072;rRNA metabolic process;1.10682350198236e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.31630593356413e-09!GO:0003677;DNA binding;1.34130531715815e-09!GO:0051028;mRNA transport;1.40862538894378e-09!GO:0006606;protein import into nucleus;2.12476413622356e-09!GO:0043038;amino acid activation;3.30852956081919e-09!GO:0006418;tRNA aminoacylation for protein translation;3.30852956081919e-09!GO:0043039;tRNA aminoacylation;3.30852956081919e-09!GO:0065002;intracellular protein transport across a membrane;3.34838794564633e-09!GO:0051170;nuclear import;3.83295669794211e-09!GO:0016881;acid-amino acid ligase activity;4.00974215137375e-09!GO:0016192;vesicle-mediated transport;4.79325613229645e-09!GO:0045449;regulation of transcription;5.15287407728546e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.36057129487388e-09!GO:0030532;small nuclear ribonucleoprotein complex;8.66652219460796e-09!GO:0005789;endoplasmic reticulum membrane;1.00244502433929e-08!GO:0051329;interphase of mitotic cell cycle;1.08547536518737e-08!GO:0006163;purine nucleotide metabolic process;1.31540619017815e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.48278102486946e-08!GO:0006732;coenzyme metabolic process;1.55578413329334e-08!GO:0003697;single-stranded DNA binding;2.29825250026903e-08!GO:0005768;endosome;2.33904098720229e-08!GO:0006164;purine nucleotide biosynthetic process;2.39824002407606e-08!GO:0005657;replication fork;2.87202793870547e-08!GO:0000775;chromosome, pericentric region;3.08520749971953e-08!GO:0009259;ribonucleotide metabolic process;3.33885185323679e-08!GO:0000245;spliceosome assembly;3.87337695985527e-08!GO:0019829;cation-transporting ATPase activity;4.43391313845113e-08!GO:0016779;nucleotidyltransferase activity;5.26716484938494e-08!GO:0032446;protein modification by small protein conjugation;5.53841695787626e-08!GO:0000075;cell cycle checkpoint;5.55108866073829e-08!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.06662475249281e-08!GO:0009150;purine ribonucleotide metabolic process;7.18859719528395e-08!GO:0005819;spindle;7.47237739193254e-08!GO:0009260;ribonucleotide biosynthetic process;9.36240522689686e-08!GO:0051325;interphase;9.42843721591351e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.24953897229014e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.31048392383924e-07!GO:0031324;negative regulation of cellular metabolic process;1.31491996317118e-07!GO:0006355;regulation of transcription, DNA-dependent;1.40115828207621e-07!GO:0015986;ATP synthesis coupled proton transport;1.40289428129794e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.40289428129794e-07!GO:0016567;protein ubiquitination;1.64360142855665e-07!GO:0006461;protein complex assembly;1.78069124482588e-07!GO:0007005;mitochondrion organization and biogenesis;2.01442675577775e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.9373324291436e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.9373324291436e-07!GO:0009141;nucleoside triphosphate metabolic process;3.06106864450442e-07!GO:0031497;chromatin assembly;3.0933263324505e-07!GO:0005813;centrosome;3.09786394688156e-07!GO:0009199;ribonucleoside triphosphate metabolic process;3.33557541834189e-07!GO:0008094;DNA-dependent ATPase activity;4.40319567213087e-07!GO:0016564;transcription repressor activity;4.63997342118725e-07!GO:0006334;nucleosome assembly;4.67799908703562e-07!GO:0016740;transferase activity;5.17799067722881e-07!GO:0005793;ER-Golgi intermediate compartment;5.89813922534609e-07!GO:0000151;ubiquitin ligase complex;6.45294193625356e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.73728496686281e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.73728496686281e-07!GO:0003899;DNA-directed RNA polymerase activity;6.93013176439469e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.29362600066239e-07!GO:0009144;purine nucleoside triphosphate metabolic process;7.29362600066239e-07!GO:0005815;microtubule organizing center;7.94509168706045e-07!GO:0009055;electron carrier activity;8.33758558941134e-07!GO:0043623;cellular protein complex assembly;9.01278338550318e-07!GO:0006754;ATP biosynthetic process;1.23655238002864e-06!GO:0006753;nucleoside phosphate metabolic process;1.23655238002864e-06!GO:0016481;negative regulation of transcription;1.36458573284886e-06!GO:0012501;programmed cell death;1.37558062718103e-06!GO:0045786;negative regulation of progression through cell cycle;1.3872241116705e-06!GO:0003714;transcription corepressor activity;1.64895465901523e-06!GO:0009060;aerobic respiration;1.65398538374556e-06!GO:0045259;proton-transporting ATP synthase complex;1.70164203344283e-06!GO:0046034;ATP metabolic process;1.85355319285524e-06!GO:0048523;negative regulation of cellular process;1.8839759783491e-06!GO:0051188;cofactor biosynthetic process;2.03670845969399e-06!GO:0016563;transcription activator activity;2.23926276365095e-06!GO:0044440;endosomal part;2.47331094134219e-06!GO:0010008;endosome membrane;2.47331094134219e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.90196843899093e-06!GO:0009892;negative regulation of metabolic process;3.07275325820507e-06!GO:0006915;apoptosis;3.08412143695262e-06!GO:0007051;spindle organization and biogenesis;3.13952415269983e-06!GO:0003713;transcription coactivator activity;3.1552069230822e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.21342914109515e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.63396006774489e-06!GO:0003684;damaged DNA binding;4.18383356808894e-06!GO:0005762;mitochondrial large ribosomal subunit;4.23191394639154e-06!GO:0000315;organellar large ribosomal subunit;4.23191394639154e-06!GO:0015078;hydrogen ion transmembrane transporter activity;4.64744671617534e-06!GO:0003682;chromatin binding;4.99558491355127e-06!GO:0051168;nuclear export;5.3742790475695e-06!GO:0008219;cell death;5.80002948034502e-06!GO:0016265;death;5.80002948034502e-06!GO:0006099;tricarboxylic acid cycle;1.0776701860914e-05!GO:0046356;acetyl-CoA catabolic process;1.0776701860914e-05!GO:0006302;double-strand break repair;1.14571971991816e-05!GO:0005770;late endosome;1.15404671491217e-05!GO:0006793;phosphorus metabolic process;1.23902620237274e-05!GO:0006796;phosphate metabolic process;1.23902620237274e-05!GO:0003724;RNA helicase activity;1.28974152407071e-05!GO:0003690;double-stranded DNA binding;1.51072326321494e-05!GO:0044452;nucleolar part;1.53262922930415e-05!GO:0019899;enzyme binding;1.70297836966489e-05!GO:0045333;cellular respiration;1.7318211606936e-05!GO:0016741;transferase activity, transferring one-carbon groups;1.80111413101636e-05!GO:0006752;group transfer coenzyme metabolic process;1.92939854509398e-05!GO:0006084;acetyl-CoA metabolic process;1.98752106571186e-05!GO:0006383;transcription from RNA polymerase III promoter;2.19919938118689e-05!GO:0005788;endoplasmic reticulum lumen;2.58099654968081e-05!GO:0000314;organellar small ribosomal subunit;2.72677894581181e-05!GO:0005763;mitochondrial small ribosomal subunit;2.72677894581181e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.78085040873112e-05!GO:0005769;early endosome;2.95584774022859e-05!GO:0065007;biological regulation;3.00065162215233e-05!GO:0051187;cofactor catabolic process;3.03610613990912e-05!GO:0008168;methyltransferase activity;3.24458728109098e-05!GO:0009109;coenzyme catabolic process;3.24458728109098e-05!GO:0008033;tRNA processing;3.27528470636203e-05!GO:0016310;phosphorylation;3.30676696587291e-05!GO:0051052;regulation of DNA metabolic process;3.32113974136263e-05!GO:0003729;mRNA binding;3.37611927780759e-05!GO:0051246;regulation of protein metabolic process;4.23822053377238e-05!GO:0009056;catabolic process;4.4127074514504e-05!GO:0009108;coenzyme biosynthetic process;4.45974476274422e-05!GO:0006310;DNA recombination;4.56339958069727e-05!GO:0048519;negative regulation of biological process;4.74860738036987e-05!GO:0044431;Golgi apparatus part;5.05763931199683e-05!GO:0006613;cotranslational protein targeting to membrane;5.21845199014258e-05!GO:0007017;microtubule-based process;5.42319403021282e-05!GO:0051427;hormone receptor binding;7.94368908889876e-05!GO:0003702;RNA polymerase II transcription factor activity;8.52022691315647e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;8.63391358575107e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;8.63391358575107e-05!GO:0003678;DNA helicase activity;8.84338814702165e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;9.50199925722685e-05!GO:0006352;transcription initiation;9.84497497503612e-05!GO:0043021;ribonucleoprotein binding;0.000103501284513335!GO:0006270;DNA replication initiation;0.000105736612552494!GO:0016853;isomerase activity;0.000109722538734839!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000116190164734753!GO:0035257;nuclear hormone receptor binding;0.000163534445696208!GO:0015631;tubulin binding;0.000165059076868384!GO:0005874;microtubule;0.000169750453704034!GO:0006338;chromatin remodeling;0.000181106892910054!GO:0006402;mRNA catabolic process;0.000181106892910054!GO:0032508;DNA duplex unwinding;0.000181550451314764!GO:0032392;DNA geometric change;0.000181550451314764!GO:0000776;kinetochore;0.000187557043731462!GO:0006284;base-excision repair;0.000191510154386543!GO:0031072;heat shock protein binding;0.000201965488397687!GO:0030120;vesicle coat;0.000204033977711271!GO:0030662;coated vesicle membrane;0.000204033977711271!GO:0006268;DNA unwinding during replication;0.000212480195457934!GO:0006839;mitochondrial transport;0.000213142750107553!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000218257540712078!GO:0000059;protein import into nucleus, docking;0.000280000111329351!GO:0048475;coated membrane;0.000286025939034556!GO:0030117;membrane coat;0.000286025939034556!GO:0045454;cell redox homeostasis;0.000292874585729678!GO:0007010;cytoskeleton organization and biogenesis;0.000292874585729678!GO:0007088;regulation of mitosis;0.00030498261755855!GO:0006401;RNA catabolic process;0.000322335315143397!GO:0043681;protein import into mitochondrion;0.000326869152566994!GO:0006916;anti-apoptosis;0.000331591408324208!GO:0008654;phospholipid biosynthetic process;0.000335420727220434!GO:0005798;Golgi-associated vesicle;0.000347544474903828!GO:0051101;regulation of DNA binding;0.000377786746073094!GO:0048471;perinuclear region of cytoplasm;0.000393551577676258!GO:0031988;membrane-bound vesicle;0.00042400360550872!GO:0045892;negative regulation of transcription, DNA-dependent;0.000453678298982096!GO:0016363;nuclear matrix;0.000459852072358853!GO:0008186;RNA-dependent ATPase activity;0.000500821367943467!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000525323333705379!GO:0008250;oligosaccharyl transferase complex;0.000525323333705379!GO:0016023;cytoplasmic membrane-bound vesicle;0.000526407538552922!GO:0000082;G1/S transition of mitotic cell cycle;0.000556086018681604!GO:0006405;RNA export from nucleus;0.000563772286848387!GO:0000139;Golgi membrane;0.000617539511064683!GO:0008139;nuclear localization sequence binding;0.000621052023745186!GO:0043069;negative regulation of programmed cell death;0.000630879186659077!GO:0005839;proteasome core complex (sensu Eukaryota);0.00069830538407668!GO:0007093;mitotic cell cycle checkpoint;0.000700840176525097!GO:0016787;hydrolase activity;0.000702642476638569!GO:0009117;nucleotide metabolic process;0.000702642476638569!GO:0007006;mitochondrial membrane organization and biogenesis;0.000705954548747736!GO:0003924;GTPase activity;0.000707952531498404!GO:0000228;nuclear chromosome;0.000720990885524363!GO:0004576;oligosaccharyl transferase activity;0.000725626813170416!GO:0043066;negative regulation of apoptosis;0.000763550295635655!GO:0031982;vesicle;0.000784037366766465!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000797343639191413!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000818549432323088!GO:0006414;translational elongation;0.000830342852303572!GO:0030880;RNA polymerase complex;0.000832350819068082!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000842665837183978!GO:0015399;primary active transmembrane transporter activity;0.000842665837183978!GO:0005876;spindle microtubule;0.00084867545309999!GO:0000049;tRNA binding;0.000912758809130678!GO:0033116;ER-Golgi intermediate compartment membrane;0.00094779847916249!GO:0000792;heterochromatin;0.000971389071620608!GO:0006611;protein export from nucleus;0.00101431503398601!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00102301562197845!GO:0043414;biopolymer methylation;0.00102642045828357!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.0010502691153573!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00108203239932577!GO:0042981;regulation of apoptosis;0.00114879020812152!GO:0031410;cytoplasmic vesicle;0.00117011445255761!GO:0043067;regulation of programmed cell death;0.00119551655643104!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00136329365234714!GO:0008276;protein methyltransferase activity;0.00137512605176718!GO:0007059;chromosome segregation;0.00139742630427101!GO:0004004;ATP-dependent RNA helicase activity;0.00140646901527616!GO:0006612;protein targeting to membrane;0.00147396726659661!GO:0043596;nuclear replication fork;0.00156614750704536!GO:0006626;protein targeting to mitochondrion;0.00158043657266596!GO:0006275;regulation of DNA replication;0.00163393741040871!GO:0016859;cis-trans isomerase activity;0.00166663453882361!GO:0032200;telomere organization and biogenesis;0.00170069075949369!GO:0000723;telomere maintenance;0.00170069075949369!GO:0000725;recombinational repair;0.00171986953649351!GO:0000724;double-strand break repair via homologous recombination;0.00171986953649351!GO:0007050;cell cycle arrest;0.00179339287913755!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00180707304560638!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00180707304560638!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00180707304560638!GO:0004298;threonine endopeptidase activity;0.00191860175922923!GO:0000786;nucleosome;0.00191860175922923!GO:0007052;mitotic spindle organization and biogenesis;0.00192112916417112!GO:0043624;cellular protein complex disassembly;0.00196445412435881!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00196445412435881!GO:0000428;DNA-directed RNA polymerase complex;0.00196445412435881!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00206511237415047!GO:0004527;exonuclease activity;0.00212722480629979!GO:0000084;S phase of mitotic cell cycle;0.00215551905114847!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00217895301503461!GO:0042802;identical protein binding;0.00221478386292728!GO:0000922;spindle pole;0.00221901528041541!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00227458381765269!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00227458381765269!GO:0005048;signal sequence binding;0.00228949559288429!GO:0051920;peroxiredoxin activity;0.00232471594908886!GO:0031570;DNA integrity checkpoint;0.00253316435539841!GO:0031252;leading edge;0.00259184372758715!GO:0032259;methylation;0.00273801194496414!GO:0008017;microtubule binding;0.00273801194496414!GO:0051320;S phase;0.00278888170397736!GO:0030867;rough endoplasmic reticulum membrane;0.00278888170397736!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00280353229564657!GO:0043492;ATPase activity, coupled to movement of substances;0.00282881371363617!GO:0005741;mitochondrial outer membrane;0.00287527336077418!GO:0051789;response to protein stimulus;0.00287527336077418!GO:0006986;response to unfolded protein;0.00287527336077418!GO:0045045;secretory pathway;0.00292725792419583!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00296386030011585!GO:0031968;organelle outer membrane;0.00306365700099824!GO:0003746;translation elongation factor activity;0.00316218125945034!GO:0004674;protein serine/threonine kinase activity;0.00337170256026071!GO:0065009;regulation of a molecular function;0.00363842066130192!GO:0046474;glycerophospholipid biosynthetic process;0.00363842066130192!GO:0051098;regulation of binding;0.00367309528498605!GO:0016251;general RNA polymerase II transcription factor activity;0.00370804580067921!GO:0005684;U2-dependent spliceosome;0.00372804572312109!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00378175146739323!GO:0051087;chaperone binding;0.00386426801009975!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00390584815450179!GO:0006892;post-Golgi vesicle-mediated transport;0.00415186027447904!GO:0006607;NLS-bearing substrate import into nucleus;0.00435053972395058!GO:0031124;mRNA 3'-end processing;0.00440574286140684!GO:0016272;prefoldin complex;0.00446384652902857!GO:0043189;H4/H2A histone acetyltransferase complex;0.00453550625064373!GO:0003711;transcription elongation regulator activity;0.00457477536598628!GO:0018196;peptidyl-asparagine modification;0.00458650333068507!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00458650333068507!GO:0006891;intra-Golgi vesicle-mediated transport;0.00466506006904049!GO:0006289;nucleotide-excision repair;0.00483186989948179!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00483186989948179!GO:0005791;rough endoplasmic reticulum;0.00483186989948179!GO:0048500;signal recognition particle;0.00484092572150393!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00488308356479541!GO:0019867;outer membrane;0.00490532114915495!GO:0032984;macromolecular complex disassembly;0.00503319986730077!GO:0000910;cytokinesis;0.00552328611411572!GO:0031901;early endosome membrane;0.00552843382166487!GO:0007004;telomere maintenance via telomerase;0.00589971821964127!GO:0043241;protein complex disassembly;0.00628369230162946!GO:0040029;regulation of gene expression, epigenetic;0.00631238718668385!GO:0004518;nuclease activity;0.00631238718668385!GO:0043284;biopolymer biosynthetic process;0.00646546550807576!GO:0008022;protein C-terminus binding;0.00654031298906631!GO:0006818;hydrogen transport;0.00684589390497493!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00693094280832788!GO:0046966;thyroid hormone receptor binding;0.00693271427897232!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00710255004888034!GO:0019843;rRNA binding;0.00714138548000853!GO:0005637;nuclear inner membrane;0.00720639112623971!GO:0046489;phosphoinositide biosynthetic process;0.00751502497086646!GO:0015980;energy derivation by oxidation of organic compounds;0.00754774953835009!GO:0030036;actin cytoskeleton organization and biogenesis;0.00789105868241646!GO:0004003;ATP-dependent DNA helicase activity;0.00791589265661415!GO:0005905;coated pit;0.0079600462612537!GO:0045893;positive regulation of transcription, DNA-dependent;0.00806648859423427!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00840889653424892!GO:0015002;heme-copper terminal oxidase activity;0.00840889653424892!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00840889653424892!GO:0004129;cytochrome-c oxidase activity;0.00840889653424892!GO:0000123;histone acetyltransferase complex;0.00850116678601785!GO:0007265;Ras protein signal transduction;0.00864860555509119!GO:0015992;proton transport;0.00866818069226438!GO:0007346;regulation of progression through mitotic cell cycle;0.00876220572033657!GO:0005669;transcription factor TFIID complex;0.00882945092348007!GO:0051053;negative regulation of DNA metabolic process;0.00900563014754437!GO:0043601;nuclear replisome;0.00905980289744666!GO:0030894;replisome;0.00905980289744666!GO:0031902;late endosome membrane;0.00915233927651471!GO:0035267;NuA4 histone acetyltransferase complex;0.00927682750712883!GO:0007264;small GTPase mediated signal transduction;0.00942174103624567!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00958215927837154!GO:0000790;nuclear chromatin;0.00993144401904831!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0100974407222506!GO:0042770;DNA damage response, signal transduction;0.0101908220735323!GO:0005525;GTP binding;0.0101953577599197!GO:0008312;7S RNA binding;0.0102394577967621!GO:0003756;protein disulfide isomerase activity;0.01050959825133!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.01050959825133!GO:0000339;RNA cap binding;0.0107314151395168!GO:0000077;DNA damage checkpoint;0.0107314151395168!GO:0043022;ribosome binding;0.0108517028655207!GO:0003725;double-stranded RNA binding;0.0108877836901013!GO:0022890;inorganic cation transmembrane transporter activity;0.011011529301911!GO:0005832;chaperonin-containing T-complex;0.0110921119298931!GO:0051252;regulation of RNA metabolic process;0.0111039248947624!GO:0045941;positive regulation of transcription;0.0112697850554935!GO:0005663;DNA replication factor C complex;0.0113259756006812!GO:0046822;regulation of nucleocytoplasmic transport;0.0114069439779297!GO:0000118;histone deacetylase complex;0.0115898618363012!GO:0009303;rRNA transcription;0.0116990483792406!GO:0003887;DNA-directed DNA polymerase activity;0.0120293873825005!GO:0019783;small conjugating protein-specific protease activity;0.0122338720912691!GO:0017166;vinculin binding;0.0122874449740979!GO:0030027;lamellipodium;0.0122874449740979!GO:0005885;Arp2/3 protein complex;0.0123086655652757!GO:0006378;mRNA polyadenylation;0.0123148829754005!GO:0009112;nucleobase metabolic process;0.0123148829754005!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0126147005359637!GO:0005869;dynactin complex;0.012727650070688!GO:0008287;protein serine/threonine phosphatase complex;0.0127284339782378!GO:0050178;phenylpyruvate tautomerase activity;0.0128398499439223!GO:0044450;microtubule organizing center part;0.0130121520821999!GO:0006730;one-carbon compound metabolic process;0.0130653725159899!GO:0030518;steroid hormone receptor signaling pathway;0.0132819173637584!GO:0009451;RNA modification;0.0135360781586173!GO:0046467;membrane lipid biosynthetic process;0.0135661044417319!GO:0046483;heterocycle metabolic process;0.0136297817162602!GO:0009081;branched chain family amino acid metabolic process;0.0136815595553989!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0136815595553989!GO:0006376;mRNA splice site selection;0.0138532795095672!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0138532795095672!GO:0048487;beta-tubulin binding;0.0139149154685774!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0139307798015952!GO:0009165;nucleotide biosynthetic process;0.0142249534156194!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0142368099708498!GO:0045047;protein targeting to ER;0.0142368099708498!GO:0006144;purine base metabolic process;0.0145033078355267!GO:0006278;RNA-dependent DNA replication;0.0146896688528365!GO:0005844;polysome;0.0152169139032436!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0152780644954317!GO:0030145;manganese ion binding;0.0162194174414209!GO:0006595;polyamine metabolic process;0.0166335562370242!GO:0042054;histone methyltransferase activity;0.0169448808057922!GO:0022411;cellular component disassembly;0.0172228044272818!GO:0004843;ubiquitin-specific protease activity;0.0178317414186192!GO:0043488;regulation of mRNA stability;0.0182537809807691!GO:0043487;regulation of RNA stability;0.0182537809807691!GO:0007090;regulation of S phase of mitotic cell cycle;0.0184133971035581!GO:0030137;COPI-coated vesicle;0.0184270753526373!GO:0044454;nuclear chromosome part;0.0187616558709478!GO:0030663;COPI coated vesicle membrane;0.0190290003344468!GO:0030126;COPI vesicle coat;0.0190290003344468!GO:0030132;clathrin coat of coated pit;0.0192399866668482!GO:0004523;ribonuclease H activity;0.019388401949343!GO:0008536;Ran GTPase binding;0.0197058719447123!GO:0051539;4 iron, 4 sulfur cluster binding;0.0199794916551323!GO:0000781;chromosome, telomeric region;0.0203622126531421!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0207632157612034!GO:0010257;NADH dehydrogenase complex assembly;0.0207632157612034!GO:0033108;mitochondrial respiratory chain complex assembly;0.0207632157612034!GO:0043433;negative regulation of transcription factor activity;0.0219566719405815!GO:0000819;sister chromatid segregation;0.0220559470193006!GO:0030133;transport vesicle;0.0227475797729464!GO:0016407;acetyltransferase activity;0.0228249436942105!GO:0008180;signalosome;0.0230169455294223!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0235698362520772!GO:0030134;ER to Golgi transport vesicle;0.0235833468538648!GO:0006505;GPI anchor metabolic process;0.0236051483716695!GO:0031371;ubiquitin conjugating enzyme complex;0.0236051483716695!GO:0006740;NADPH regeneration;0.0236167051370079!GO:0006098;pentose-phosphate shunt;0.0236167051370079!GO:0033261;regulation of progression through S phase;0.0236754582290701!GO:0031625;ubiquitin protein ligase binding;0.0236754582290701!GO:0006301;postreplication repair;0.0238580165187472!GO:0035258;steroid hormone receptor binding;0.0240839315654111!GO:0004221;ubiquitin thiolesterase activity;0.0246210500456441!GO:0031529;ruffle organization and biogenesis;0.0252037632784671!GO:0000070;mitotic sister chromatid segregation;0.025824900146326!GO:0001832;blastocyst growth;0.0259853786563548!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0260230327086127!GO:0016585;chromatin remodeling complex;0.0260230327086127!GO:0030522;intracellular receptor-mediated signaling pathway;0.0265855096035422!GO:0031123;RNA 3'-end processing;0.0272683086014265!GO:0051100;negative regulation of binding;0.0274964261270463!GO:0006506;GPI anchor biosynthetic process;0.0275008074944072!GO:0043392;negative regulation of DNA binding;0.028102834678547!GO:0005875;microtubule associated complex;0.0281520283143539!GO:0008213;protein amino acid alkylation;0.0284782552836495!GO:0006479;protein amino acid methylation;0.0284782552836495!GO:0030911;TPR domain binding;0.0284913262581222!GO:0016044;membrane organization and biogenesis;0.0284913262581222!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0285089979122603!GO:0030496;midbody;0.0285342767861169!GO:0030384;phosphoinositide metabolic process;0.028846537331685!GO:0007021;tubulin folding;0.0289531242459418!GO:0045815;positive regulation of gene expression, epigenetic;0.0290291536173311!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0290764648325606!GO:0006406;mRNA export from nucleus;0.0291775149036169!GO:0016581;NuRD complex;0.0291775149036169!GO:0051059;NF-kappaB binding;0.0298731034569564!GO:0008652;amino acid biosynthetic process;0.0300338784576378!GO:0033170;DNA-protein loading ATPase activity;0.0304076611751772!GO:0003689;DNA clamp loader activity;0.0304076611751772!GO:0043130;ubiquitin binding;0.0305975262538477!GO:0032182;small conjugating protein binding;0.0305975262538477!GO:0051656;establishment of organelle localization;0.0307892645450865!GO:0005720;nuclear heterochromatin;0.0310719494955853!GO:0051287;NAD binding;0.0313874528677933!GO:0008156;negative regulation of DNA replication;0.0317532807611127!GO:0006400;tRNA modification;0.0322147771938975!GO:0042393;histone binding;0.0329869467145883!GO:0031628;opioid receptor binding;0.0329869467145883!GO:0031852;mu-type opioid receptor binding;0.0329869467145883!GO:0005652;nuclear lamina;0.0329869467145883!GO:0006520;amino acid metabolic process;0.0332485915172886!GO:0000178;exosome (RNase complex);0.0334901688428517!GO:0051540;metal cluster binding;0.0334901688428517!GO:0051536;iron-sulfur cluster binding;0.0334901688428517!GO:0046112;nucleobase biosynthetic process;0.0336353330931909!GO:0016197;endosome transport;0.0339928927620421!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.0342977400768049!GO:0030176;integral to endoplasmic reticulum membrane;0.0343392424624031!GO:0043087;regulation of GTPase activity;0.034621721648015!GO:0004722;protein serine/threonine phosphatase activity;0.03537816028436!GO:0000726;non-recombinational repair;0.0357883789850606!GO:0016790;thiolester hydrolase activity;0.0358644922126192!GO:0016279;protein-lysine N-methyltransferase activity;0.0365870215076269!GO:0018024;histone-lysine N-methyltransferase activity;0.0365870215076269!GO:0016278;lysine N-methyltransferase activity;0.0365870215076269!GO:0004239;methionyl aminopeptidase activity;0.0369847626632817!GO:0006650;glycerophospholipid metabolic process;0.0370789599989081!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0373057599157027!GO:0042791;5S class rRNA transcription;0.0380692340758104!GO:0000127;transcription factor TFIIIC complex;0.0380692340758104!GO:0042797;tRNA transcription from RNA polymerase III promoter;0.0380692340758104!GO:0030658;transport vesicle membrane;0.0383418735927724!GO:0006984;ER-nuclear signaling pathway;0.0383418735927724!GO:0009083;branched chain family amino acid catabolic process;0.0384076944881689!GO:0030521;androgen receptor signaling pathway;0.0385285959681657!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.03949219723766!GO:0045947;negative regulation of translational initiation;0.0396073540143634!GO:0000096;sulfur amino acid metabolic process;0.0403567892237176!GO:0005732;small nucleolar ribonucleoprotein complex;0.0406743642090012!GO:0042809;vitamin D receptor binding;0.0412133195560155!GO:0006220;pyrimidine nucleotide metabolic process;0.0415192625512141!GO:0031057;negative regulation of histone modification;0.0415399413322232!GO:0035067;negative regulation of histone acetylation;0.0415399413322232!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0415965870231838!GO:0000060;protein import into nucleus, translocation;0.0415965870231838!GO:0000152;nuclear ubiquitin ligase complex;0.0415965870231838!GO:0016569;covalent chromatin modification;0.0416561860465828!GO:0006354;RNA elongation;0.0420850486043271!GO:0003893;epsilon DNA polymerase activity;0.042233847667716!GO:0048468;cell development;0.0425910232136696!GO:0016491;oxidoreductase activity;0.0428969445023933!GO:0005784;translocon complex;0.0442854331177173!GO:0016579;protein deubiquitination;0.0444637011698936!GO:0017134;fibroblast growth factor binding;0.044524616970322!GO:0047485;protein N-terminus binding;0.044524616970322!GO:0030320;cellular monovalent inorganic anion homeostasis;0.044524616970322!GO:0055083;monovalent inorganic anion homeostasis;0.044524616970322!GO:0055064;chloride ion homeostasis;0.044524616970322!GO:0030644;cellular chloride ion homeostasis;0.044524616970322!GO:0042769;DNA damage response, detection of DNA damage;0.0464834350143131!GO:0006497;protein amino acid lipidation;0.0472008376095779!GO:0030118;clathrin coat;0.047908430414692!GO:0019104;DNA N-glycosylase activity;0.048204297767294!GO:0005680;anaphase-promoting complex;0.0483215558471945!GO:0006091;generation of precursor metabolites and energy;0.0483215558471945!GO:0032561;guanyl ribonucleotide binding;0.0489328413000821!GO:0019001;guanyl nucleotide binding;0.0489328413000821!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0496107305489855!GO:0045039;protein import into mitochondrial inner membrane;0.0496107305489855!GO:0042158;lipoprotein biosynthetic process;0.0497316924970899!GO:0006778;porphyrin metabolic process;0.0497612367269148!GO:0033013;tetrapyrrole metabolic process;0.0497612367269148!GO:0030660;Golgi-associated vesicle membrane;0.0497612367269148
|sample_id=10728
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=brain
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|xref=
}}
}}

Revision as of 19:42, 10 August 2017

Name:neuroepithelioma cell line:SK-N-MC
Species:Human (Homo sapiens)
Library ID:CNhs11853
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuebrain
dev stageNA
sexfemale
age14
cell typeunclassifiable
cell lineSK-N-MC
companyATCC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005035
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11853 CAGE DRX007967 DRR008839
Accession ID Hg19

Library idBAMCTSS
CNhs11853 DRZ000264 DRZ001649
Accession ID Hg38

Library idBAMCTSS
CNhs11853 DRZ011614 DRZ012999
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.446
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-9.922689e-4
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0591
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0217
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0478
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.233
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0242
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.56
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11853

Jaspar motifP-value
MA0002.20.00894
MA0003.10.34
MA0004.10.00807
MA0006.10.0364
MA0007.10.634
MA0009.10.076
MA0014.10.476
MA0017.10.0033
MA0018.20.0271
MA0019.10.802
MA0024.12.3308e-8
MA0025.10.742
MA0027.10.231
MA0028.10.629
MA0029.10.141
MA0030.10.787
MA0031.10.575
MA0035.20.279
MA0038.10.0228
MA0039.20.394
MA0040.10.528
MA0041.10.322
MA0042.10.973
MA0043.10.149
MA0046.10.444
MA0047.20.698
MA0048.10.538
MA0050.18.06653e-17
MA0051.11.09648e-5
MA0052.10.265
MA0055.10.0982
MA0057.10.904
MA0058.10.0115
MA0059.10.055
MA0060.11.04766e-8
MA0061.10.181
MA0062.20.604
MA0065.20.0274
MA0066.10.0938
MA0067.10.296
MA0068.18.8273e-4
MA0069.10.168
MA0070.10.206
MA0071.10.963
MA0072.10.301
MA0073.10.681
MA0074.10.348
MA0076.10.287
MA0077.10.381
MA0078.10.599
MA0079.20.558
MA0080.25.61521e-10
MA0081.10.0419
MA0083.10.0565
MA0084.10.0404
MA0087.10.768
MA0088.10.303
MA0090.10.653
MA0091.10.395
MA0092.10.249
MA0093.10.00385
MA0099.22.58416e-9
MA0100.10.531
MA0101.10.5
MA0102.20.0771
MA0103.10.205
MA0104.20.0014
MA0105.10.252
MA0106.10.233
MA0107.10.401
MA0108.20.907
MA0111.10.907
MA0112.22.85935e-4
MA0113.10.34
MA0114.10.0294
MA0115.10.368
MA0116.10.208
MA0117.10.707
MA0119.10.717
MA0122.10.712
MA0124.10.829
MA0125.10.651
MA0131.10.642
MA0135.10.992
MA0136.19.90891e-6
MA0137.20.955
MA0138.20.367
MA0139.10.626
MA0140.10.88
MA0141.10.407
MA0142.10.171
MA0143.10.251
MA0144.10.141
MA0145.10.00322
MA0146.10.311
MA0147.10.00172
MA0148.10.766
MA0149.10.00147
MA0150.10.00628
MA0152.10.386
MA0153.10.863
MA0154.10.252
MA0155.10.635
MA0156.10.0793
MA0157.10.369
MA0159.12.29328e-4
MA0160.10.313
MA0162.10.0783
MA0163.10.295
MA0164.10.975
MA0258.10.0476
MA0259.10.0115



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11853

Novel motifP-value
10.664
100.267
1000.82
1010.768
1020.74
1030.0746
1040.874
1050.688
1068.98929e-4
1070.0147
1080.478
1090.0822
110.215
1100.778
1110.302
1120.00518
1130.445
1140.00562
1150.0897
1160.34
1170.614
1180.283
1190.146
120.526
1200.744
1210.295
1220.386
1230.416
1240.589
1250.588
1260.443
1270.503
1280.129
1290.705
130.781
1300.019
1310.28
1320.488
1330.285
1340.451
1350.0895
1360.502
1370.191
1380.634
1390.452
140.27
1400.0312
1410.164
1420.995
1430.335
1440.389
1450.0963
1460.919
1470.955
1480.0678
1490.0483
150.824
1500.286
1510.169
1520.0163
1530.923
1540.891
1550.222
1560.892
1570.259
1580.374
1590.282
160.15
1600.441
1610.745
1620.472
1630.924
1640.28
1650.918
1660.313
1670.735
1680.328
1690.0071
170.523
180.664
190.0121
20.123
200.811
210.0911
220.238
230.144
240.853
250.407
260.203
270.326
280.713
290.444
30.277
300.671
310.308
328.29642e-5
330.642
340.818
350.749
360.464
370.0313
380.472
390.237
40.2
400.439
410.353
420.468
430.32
440.133
450.428
460.173
470.457
480.454
490.716
50.309
500.265
510.577
520.144
530.55
540.506
550.484
560.623
570.411
580.481
590.0546
60.7
600.0644
610.468
620.321
630.352
640.978
650.356
660.222
670.283
680.62
690.522
70.979
700.00694
710.0492
720.521
730.00657
740.962
750.241
760.963
770.0282
780.456
790.022
80.707
800.5
810.653
820.159
830.167
840.501
851.7935e-4
860.4
870.168
880.622
890.105
90.381
900.952
910.171
920.137
930.871
940.455
950.156
960.771
970.336
980.765
990.513



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11853


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000333 (migratory neural crest cell)
0000003 (native cell)
0000548 (animal cell)
0002321 (embryonic cell)
0000219 (motile cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3093 (nervous system cancer)
0050687 (cell type cancer)
171 (neuroectodermal tumor)
3095 (germ cell and embryonal cancer)
1192 (peripheral nervous system neoplasm)
2994 (germ cell cancer)
1115 (sarcoma)
169 (neuroendocrine tumor)
3193 (peripheral nerve sheath neoplasm)
962 (neurofibroma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000013 (sympathetic nervous system)
0003714 (neural tissue)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0002410 (autonomic nervous system)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0000010 (peripheral nervous system)
0001016 (nervous system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100400 (sarcoma cell line sample)
0100932 (neuroblastoma cell line sample)
0102912 (neuroepithelioma cell line sample)
0104785 (Ewing's sarcoma family tumor cell line sample)
0102914 (SK-N-MC cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

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