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{{f5samples
 
{{f5samples
 +
|DRA_sample_Accession=CAGE@SAMD00005390
 +
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005390
 +
|accession_numbers=CAGE;DRX008261;DRR009133;DRZ000558;DRZ001943;DRZ011908;DRZ013293
 +
|accession_numbers_RNASeq=sRNA-Seq;DRX037236;DRR041602;DRZ007244
 
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004923,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0001828,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0000166
 
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004923,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0001828,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0000166
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002552
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002552
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|created_by=
 
|created_by=
 
|creation_date=
 
|creation_date=
|datafreeze_phase=1
+
|data_phase=2
 +
|datafreeze_phase=2
 
|def=
 
|def=
 
|expression_enrichment_score=chr6:34204921..34204939,+!p3@HMGA1!2.05!3098.62!HMGA1;;chr14:61116183..61116208,-!p1@SIX1!1.85!251.69!SIX1;;chr14:37131058..37131139,+!p1@PAX9!1.79!60.19!PAX9;;chr1:170633348..170633399,+!p2@PRRX1!1.70!65.35!PRRX1;;chr16:86544113..86544145,+!p1@FOXF1!1.69!59.21!FOXF1;;chr12:66218255..66218304,+!p3@HMGA2!1.65!112.76!HMGA2;;chr20:55204351..55204377,+!p1@TFAP2C!1.64!54.05!TFAP2C;;chr9:96717629..96717644,-!p1@BARX1!1.63!41.89!BARX1;;chr1:170632285..170632309,+!p1@PRRX1!1.62!45.94!PRRX1;;chr12:66218598..66218645,+!p2@HMGA2!1.59!169.27!HMGA2;;chr6:1389789..1389821,+!p1@FOXF2!1.54!45.33!FOXF2;;chr4:4861385..4861398,+!p1@MSX1!1.50!87.21!MSX1;;chr2:45236540..45236577,-!p1@SIX2!1.48!29.11!SIX2;;chr7:19157248..19157268,-!p1@TWIST1!1.45!73.09!TWIST1;;chr15:57511609..57511651,+!p2@TCF12!1.41!41.27!TCF12;;chr6:134210243..134210257,+!p1@TCF21!1.41!24.69!TCF21;;chr10:28034739..28034756,-!p1@MKX!1.38!23.09!MKX;;chr12:66218212..66218244,+!p5@HMGA2!1.37!32.06!HMGA2;;chr14:37126765..37126799,+!p2@PAX9!1.31!19.28!PAX9;;chr12:66218183..66218209,+!p4@HMGA2!1.30!35.99!HMGA2;;chr1:170633262..170633285,+!p3@PRRX1!1.27!20.02!PRRX1;;chr12:66218836..66218888,+!p1@HMGA2!1.24!149.24!HMGA2;;chr16:86600426..86600441,+!p1@FOXC2!1.23!38.94!FOXC2;;chr4:81118647..81118666,+!p1@PRDM8!1.23!21.13!PRDM8;;chr11:65667884..65667895,-!p2@FOSL1!1.22!60.43!FOSL1;;chr14:61116168..61116180,-!p2@SIX1!1.21!17.32!SIX1;;chr17:59477233..59477263,+!p1@TBX2!1.20!45.57!TBX2;;chr2:19558373..19558392,-!p1@OSR1!1.15!35.87!OSR1;;chr2:5832508..5832524,+!p1@SOX11!1.15!13.14!SOX11;;chr9:132427883..132427951,+!p2@PRRX2!1.15!13.14!PRRX2;;chr20:42543441..42543497,+!p1@TOX2!1.13!56.38!TOX2;;chr12:66218573..66218596,+!p7@HMGA2!1.12!18.06!HMGA2;;chr2:239756671..239756732,+!p1@TWIST2!1.10!37.71!TWIST2;;chr9:132427972..132428056,+!p1@PRRX2!1.04!13.14!PRRX2;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.04!10.07!POU3F3;;chr20:42543506..42543549,+!p2@TOX2!1.03!23.71!TOX2;;chr2:200322654..200322707,-!p2@SATB2!1.03!14.37!SATB2;;chr7:14029283..14029311,-!p1@ETV1!1.02!51.84!ETV1;;chr2:239756739..239756755,+!p2@TWIST2!1.01!16.09!TWIST2;;chr2:172949484..172949522,+!p1@DLX1!1.01!9.21!DLX1;;chr9:102584262..102584276,+!p1@NR4A3!1.00!20.51!NR4A3;;chr12:66358080..66358094,+!p15@HMGA2!0.99!8.84!HMGA2;;chr1:170632250..170632277,+!p7@PRRX1!0.99!8.72!PRRX1;;chr11:65686802..65686818,+!p6@DRAP1!0.97!14.62!DRAP1;;chr19:46801639..46801699,+!p1@HIF3A!0.97!8.35!HIF3A;;chr11:65686732..65686756,+!p2@DRAP1!0.95!34.64!DRAP1;;chr9:102584159..102584174,+!p2@NR4A3!0.95!14.37!NR4A3;;chr2:95963052..95963106,+!p1@KCNIP3!0.95!7.98!KCNIP3;;chr17:41622731..41622764,-!p5@ETV4!0.95!7.98!ETV4;;chr5:72744594..72744609,-!p1@FOXD1!0.94!36.24!FOXD1;;chr11:65667846..65667868,-!p1@FOSL1!0.93!205.38!FOSL1;;chr17:41622765..41622821,-!p2@ETV4!0.93!11.55!ETV4;;chr12:115122318..115122331,-!p2@TBX3!0.93!7.49!TBX3;;chr6:1389824..1389840,+!p3@FOXF2!0.93!7.49!FOXF2;;chr6:10412600..10412637,-!p1@TFAP2A!0.92!12.53!TFAP2A;;chr7:14028488..14028516,-!p2@ETV1!0.91!7.86!ETV1;;chrY:21906594..21906622,-!p1@KDM5D!0.91!7.12!KDM5D;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.90!7.37!GLIS1;;chr12:85673977..85674015,+!p1@ALX1!0.90!6.88!ALX1;;chr9:77112244..77112262,+!p1@RORB!0.89!7.74!RORB;;chr11:46299199..46299233,+!p1@CREB3L1!0.88!35.74!CREB3L1;;chr5:321810..321877,+!p1@AHRR!0.88!21.99!AHRR;;chr17:59477197..59477212,+!p2@TBX2!0.88!11.55!TBX2;;chr17:59477275..59477286,+!p3@TBX2!0.88!8.84!TBX2;;chr6:10415276..10415341,-!p2@TFAP2A!0.88!8.11!TFAP2A;;chr12:66218420..66218439,+!p12@HMGA2!0.88!6.63!HMGA2;;chr12:66357214..66357233,+!p13@HMGA2!0.88!6.63!HMGA2;;chr14:37126814..37126834,+!p4@PAX9!0.86!6.26!PAX9;;chr6:34204973..34204990,+!p4@HMGA1!0.85!85.62!HMGA1;;chr12:66218378..66218401,+!p6@HMGA2!0.85!9.70!HMGA2;;chr3:141105705..141105770,+!p4@ZBTB38!0.85!7.49!ZBTB38;;chr4:299227..299272,-!p1@ZNF732!0.85!6.14!ZNF732;;chr2:172950227..172950249,+!p2@DLX1!0.85!6.02!DLX1;;chr4:26322267..26322334,+!p3@RBPJ!0.83!14.62!RBPJ;;chrY:2803415..2803468,+!p1@ZFY!0.83!5.77!ZFY;;chr12:66218904..66218913,+!p11@HMGA2!0.83!5.77!HMGA2;;chr6:34204672..34204692,+!p1@HMGA1!0.81!659.13!HMGA1;;chr14:73360799..73360817,-!p1@DPF3!0.80!19.53!DPF3;;chr11:46299539..46299620,+!p2@CREB3L1!0.80!9.46!CREB3L1;;chr5:176738887..176738934,-!p1@MXD3!0.78!36.85!MXD3;;chr12:66218152..66218174,+!p10@HMGA2!0.78!5.40!HMGA2;;chr2:223163706..223163730,-!p1@PAX3!0.78!5.04!PAX3;;chr7:19157043..19157088,-!p2@TWIST1!0.77!13.02!TWIST1;;chr9:102584128..102584144,+!p3@NR4A3!0.77!9.83!NR4A3;;chr15:57511589..57511608,+!p4@TCF12!0.77!4.91!TCF12;;chr2:96012397..96012417,+!p3@KCNIP3!0.75!4.67!KCNIP3;;chr1:75602043..75602093,+!p1@LHX8!0.75!4.67!LHX8;;chr2:102091566..102091581,-!p1@RFX8!0.74!4.54!RFX8;;chr2:45236579..45236596,-!p2@SIX2!0.74!4.54!SIX2;;chr17:41623692..41623715,-!p1@ETV4!0.73!20.64!ETV4;;chr5:72744445..72744466,-!p2@FOXD1!0.73!7.74!FOXD1;;chr17:41623009..41623053,-!p4@ETV4!0.73!7.37!ETV4;;chr15:83953397..83953425,-!p1@BNC1!0.73!5.16!BNC1;;chr12:115121802..115121814,-!p5@TBX3!0.73!4.42!TBX3;;chr16:86600870..86600921,+!p2@FOXC2!0.72!4.30!FOXC2;;chr16:86612320..86612394,+!p1@FOXL1!0.72!4.30!FOXL1;;chr2:102091144..102091183,-!p2@RFX8!0.72!4.30!RFX8;;chr1:170632137..170632172,+!p10@PRRX1!0.71!4.18!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.71!4.18!PRRX1;;chr1:170632959..170632987,+!p4@PRRX1!0.70!4.42!PRRX1;;chr3:12329358..12329393,+!p3@PPARG!0.69!10.44!PPARG;;chr12:66218443..66218461,+!p8@HMGA2!0.69!5.16!HMGA2;;chr12:2986206..2986258,-!p2@FOXM1!0.68!26.04!FOXM1;;chr2:185463247..185463263,+!p1@ZNF804A!0.68!7.25!ZNF804A;;chr6:31126291..31126399,+!p1@TCF19!0.67!40.41!TCF19;;chr17:41622925..41622976,-!p3@ETV4!0.67!5.90!ETV4;;chr17:41277372..41277418,-!p1@BRCA1!0.66!14.74!BRCA1;;chr20:55205825..55205847,+!p2@TFAP2C!0.66!3.56!TFAP2C;;chr8:60031619..60031676,-!p1@TOX!0.65!8.35!TOX;;chr19:58373157..58373159,+!p4@ZNF587!0.65!6.88!ZNF587;;chr9:16870710..16870763,-!p1@BNC2!0.65!6.51!BNC2;;chr2:172967276..172967296,-!p3@DLX2!0.65!3.44!DLX2;;chr12:115121962..115121987,-!p1@TBX3!0.64!33.29!TBX3;;chr8:67525473..67525518,-!p1@MYBL1!0.64!8.60!MYBL1;;chr17:7492684..7492778,-!p2@SOX15!0.64!7.86!SOX15;;chr6:1312325..1312340,+!p1@FOXQ1!0.64!5.90!FOXQ1;;chr1:25256756..25256774,-!p1@RUNX3!0.63!6.76!RUNX3;;chr12:2986275..2986363,-!p1@FOXM1!0.62!38.20!FOXM1;;chr2:200323414..200323455,-!p1@SATB2!0.62!7.62!SATB2;;chr12:66218469..66218477,+!p16@HMGA2!0.62!3.19!HMGA2;;chr1:170632439..170632465,+!p11@PRRX1!0.62!3.19!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.62!3.19!PRRX1;;chr17:41622982..41623001,-!p11@ETV4!0.62!3.19!ETV4;;chr4:26322373..26322393,+!p4@RBPJ!0.61!4.91!RBPJ;;chr7:14029312..14029325,-!p4@ETV1!0.61!3.93!ETV1;;chr12:115121770..115121781,-!p4@TBX3!0.61!3.07!TBX3;;chr1:170632647..170632659,+!p17@PRRX1!0.61!3.07!PRRX1;;chr1:170632115..170632136,+!p9@PRRX1!0.60!2.95!PRRX1;;chr17:17726907..17726958,-!p2@SREBF1!0.59!21.37!SREBF1;;chr3:141121847..141121868,+!p5@ZBTB38!0.59!4.79!ZBTB38;;chr8:60031762..60031803,-!p3@TOX!0.59!4.54!TOX;;chr19:38720294..38720348,-!p1@DPF1!0.59!3.81!DPF1;;chr3:157823517..157823562,-!p1@SHOX2!0.59!3.19!SHOX2;;chr2:96012353..96012378,+!p4@KCNIP3!0.58!2.83!KCNIP3;;chr6:1389871..1389876,+!p4@FOXF2!0.58!2.83!FOXF2;;chr3:12329397..12329433,+!p2@PPARG!0.57!7.12!PPARG;;chr8:60031682..60031710,-!p2@TOX!0.57!4.91!TOX;;chr8:67525443..67525459,-!p2@MYBL1!0.57!4.42!MYBL1;;chr2:172967242..172967265,-!p2@DLX2!0.57!2.70!DLX2;;chr16:86612046..86612065,+!p3@FOXL1!0.57!2.70!FOXL1;;chr8:67525524..67525543,-!p3@MYBL1!0.56!4.79!MYBL1;;chr11:65687222..65687240,+!p7@DRAP1!0.56!3.56!DRAP1;;chr3:141087393..141087426,+!p3@ZBTB38!0.55!12.28!ZBTB38;;chr1:8934931..8934947,-!p4@ENO1!0.55!10.07!ENO1;;chr5:72744562..72744573,-!p3@FOXD1!0.55!3.32!FOXD1;;chr1:170632723..170632739,+!p8@PRRX1!0.55!2.58!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.55!2.58!PRRX1;;chr20:32274179..32274213,-!p1@E2F1!0.54!20.76!E2F1;;chr11:65687243..65687276,+!p8@DRAP1!0.54!3.56!DRAP1;;chr19:45260775..45260838,+!p5@BCL3!0.54!3.44!BCL3;;chr12:66218003..66218018,+!p9@HMGA2!0.54!3.19!HMGA2;;chr11:65668011..65668020,-!p3@FOSL1!0.54!2.46!FOSL1;;chr12:66218923..66218934,+!p14@HMGA2!0.54!2.46!HMGA2;;chr16:86612149..86612161,+!p2@FOXL1!0.54!2.46!FOXL1;;chr9:124991204..124991246,-!p1@LHX6!0.54!2.46!LHX6;;chr6:50786591..50786614,+!p1@TFAP2B!0.54!2.46!TFAP2B;;chr10:63853436..63853442,+!p4@ARID5B!0.53!15.97!ARID5B;;chr11:65687362..65687436,+!p3@DRAP1!0.53!13.39!DRAP1;;chr8:77593474..77593612,+!p1@ZFHX4!0.53!12.65!ZFHX4;;chr18:22932080..22932170,-!p1@ZNF521!0.53!12.65!ZNF521;;chr9:16870659..16870675,-!p2@BNC2!0.53!3.07!BNC2;;chr4:26322419..26322479,+!p2@RBPJ!0.52!36.36!RBPJ;;chr17:70117153..70117174,+!p1@SOX9!0.52!30.71!SOX9;;chr11:65686952..65686975,+!p5@DRAP1!0.52!16.21!DRAP1;;chr3:71007770..71007789,-!p9@FOXP1!0.52!7.25!FOXP1;;chr11:63684602..63684664,-!p1@RCOR2!0.52!5.28!RCOR2;;chr17:41622834..41622883,-!p6@ETV4!0.52!2.95!ETV4;;chr10:28034772..28034783,-!p4@MKX!0.52!2.33!MKX;;chr12:115122262..115122271,-!p7@TBX3!0.52!2.33!TBX3;;chr8:116673894..116673913,-!p12@TRPS1!0.52!2.33!TRPS1;;chr9:77112225..77112238,+!p2@RORB!0.52!2.33!RORB;;chr1:170632310..170632321,+!p15@PRRX1!0.52!2.33!PRRX1;;chr20:42602000..42602034,+!p5@TOX2!0.52!2.33!TOX2;;chr17:56065729..56065781,-!p2@VEZF1!0.51!12.28!VEZF1;;chr14:21994337..21994442,-!p1@SALL2!0.51!7.62!SALL2;;chr2:172967621..172967637,-!p1@DLX2!0.51!7.37!DLX2;;chr2:121493425..121493474,+!p1@GLI2!0.51!5.90!GLI2;;chr19:13134457..13134462,+!p5@NFIX!0.51!4.54!NFIX;;chrX:66763856..66763896,+!p1@AR!0.51!3.56!AR;;chr4:57522166..57522260,-!p2@HOPX!0.51!2.70!HOPX;;chr2:172967353..172967365,-!p5@DLX2!0.51!2.21!DLX2;;chr2:5832493..5832507,+!p2@SOX11!0.51!2.21!SOX11;;chr9:96717663..96717666,-!p4@BARX1!0.51!2.21!BARX1;;chr8:93074803..93074845,-!p1@RUNX1T1!0.51!2.21!RUNX1T1;;chr1:75600067..75600094,+!p2@LHX8!0.51!2.21!LHX8;;chr18:52969844..52969895,-!p27@TCF4!0.51!2.21!TCF4;;chr11:46299443..46299459,+!p4@CREB3L1!0.51!2.21!CREB3L1;;chr7:44143925..44143970,+!p1@AEBP1!0.50!64.12!AEBP1;;chr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 +
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002552;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000166;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000344;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001828;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003729
 +
|ffid_belonging_in_development=CL:0000134
 
|fonse_cell_line=
 
|fonse_cell_line=
 
|fonse_cell_line_closure=
 
|fonse_cell_line_closure=
Line 37: Line 44:
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
 
|has_quality=
 
|has_quality=
 +
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor2.CNhs11961.11318-117D4.hg19.nobarcode.bam
 +
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor2.CNhs11961.11318-117D4.hg19.ctss.bed.gz
 +
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor2.CNhs11961.11318-117D4.hg19.nobarcode.rdna.fa.gz
 +
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor2.CNhs11961.11318-117D4.hg38.nobarcode.bam
 +
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor2.CNhs11961.11318-117D4.hg38.nobarcode.ctss.bed.gz
 
|id=FF:11318-117D4
 
|id=FF:11318-117D4
 
|is_a=EFO:0002091;;FF:0000063
 
|is_a=EFO:0002091;;FF:0000063
 
|is_obsolete=
 
|is_obsolete=
 +
|library_id=CNhs11961
 +
|library_id_phase_based=2:CNhs11961
 +
|microRNAs=
 +
|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11318
 +
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.AGTCAA.11318
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11318
 +
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.AGTCAA.11318
 
|name=Fibroblast - Gingival, donor2
 
|name=Fibroblast - Gingival, donor2
 
|namespace=FANTOM5
 
|namespace=FANTOM5
Line 45: Line 65:
 
|profile_cagescan=,,,
 
|profile_cagescan=,,,
 
|profile_hcage=CNhs11961,LSID836,release011,COMPLETED
 
|profile_hcage=CNhs11961,LSID836,release011,COMPLETED
|profile_rnaseq=,,,
+
|profile_rnaseq=
 
|profile_srnaseq=SRhi10014,,,
 
|profile_srnaseq=SRhi10014,,,
 +
|refex=http://refex.dbcls.jp/genelist.php?lang
 +
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 +
|repeat_enrich_byname=0,0,0,0.0503156775564332,0.0755405199878837,0,0.0503156775564332,0,0,0.0503156775564332,0.297251429416291,0,0,0.136245738543973,0,0,0.0500725541307267,0,-0.126104144137867,-0.00726940397949913,0,0,0.404450316877425,0,0,0,0,0.0503156775564332,0,0,0.136245738543973,0,0.519200584194899,0,-0.0504125515893149,0,0,0.0503156775564332,0,0.0494975881881358,-0.255156553341974,0,0.0430008779501913,-0.018028583520935,0,0,0,0,-0.0794778845338195,0,-0.0705638062373074,-0.0827201683234173,-0.171295910546374,0.221513086303169,0.0290882989356899,0,0,0,0.118268621304303,0.164856208358578,0,0,0.0127093484840304,0.073288846518341,0,0,0.61283537126664,0,-0.0257194928374387,0.236470711396515,0,0.177270186767994,0,0,0,0,0,0.0503156775564332,0,0,0,0,0,-0.00979220219832725,0.126714131748323,0.0441892729990154,0.0503156775564332,0.0954025292462185,0,-0.111354193891887,0.0503156775564332,0.0628083343573446,0.685174677915057,0.138298603512682,0.0077935930807491,-0.210170138523007,0,-0.16614398846594,0.0236102125389881,-0.496605997665886,-0.0799839738539042,0.287116028828264,0.0179679788255723,0,-0.0074164414494603,0.24326986303263,0.0559960863152119,0.0340551615981899,0.0255463252485663,0.218014102089127,0.0076228514000678,0,0,0,0.00669146419238564,0,0,-0.166757642066701,-0.0273899012983402,-0.128200826838455,-0.0541885462480994,0.0901901850761945,0.20390930562992,0.226120856936075,0.0812235213003906,0.0298862309766929,0.332730101827287,0.0120622268892017,0.0954025292462185,-0.0166881770811677,0.0174660352719122,-0.0231931629842052,0.0193082450784394,0,-0.0905756937512586,0.0679014774666045,0.0251578387782166,0.157447417954829,0.0782897393402002,0,0,0.210735887339442,0,0,0.081856190821565,0.00335875766850104,0,0.058047264586768,-0.270016507435597,-0.096609823011572,0,-0.0669357002151865,0.0440435066948295,0.0140121981645439,0,-0.18477080995953,0.0275659737681959,0,0.0319950119261476,0,0.0674269360339042,-0.0493414178006492,0.0748105982244283,0.0313079230355549,-0.008131149255392,-0.240768850412704,0.0634545996794893,0.0134643725917991,0.146352098498846,0.0598979189803801,1.69151395848673,-0.0381067335147487,0.115015575400626,-0.083118389842002,-0.0440361576788413,0.134954475931519,0.0503156775564332,0.0661349714001227,0,-0.174834036771341,0,0.144563733906338,0.328056952390658,-0.169813738986117,0.04646709448367,0,0.065201106441915,-0.548329643210543,0.0954025292462185,0.104078150716649,0.0068166346533791,0,0.459318863043746,0.100393368370213,-0.16394916324148,0.213372440821933,0,0.0784105454742414,0,0,0.0226116208279188,0.157925730295333,0,-0.14479350345417,-0.401253215837977,-0.0812697211826372,-0.0205685441887156,0.269475635594569,0,-0.0231037809584638,0,0.0954025292462185,-0.282570991407958,0.0457714403994831,0.152051927471182,0.117959073773668,0,0.0430533043565635,0,0,0.0304219324102439,0,0.338974224970631,0.0038031628719201,0.0503156775564332,0.256802195302082,0.231353961624009,0,0,0.0503156775564332,0.0407722220843187,0.0954025292462185,0.0954025292462185,0,0,0.0251578387782166,0,0.0103363488180158,-0.0760692021010319,0.0988693982108443,0,0.0914657456928591,0,0,0,0,0,0,0,0.0503156775564332,0.0734926805016949,0.0598237413327191,0.0505584555491698,0.0251578387782166,0,0,0.00628105264907607,0.198722813914389,0.0940148673215674,0.17357587122559,0.0417131647279584,0.0954025292462185,0,0,0,0.237216082620861,0,0,0.0251578387782166,0.086787935612795,0.0376720721925545,-0.0532020565975966,0,0,0,-0.140708663057818,0,0,0,0.0259438013306696,0.0159262312787221,0,0,0.0609782434471732,0,-0.000425344449912712,-0.0312662019904082,0,0.142705513279228,0.16985329806923,-0.3444233797215,0,0.17357587122559,-0.211031454233454,0,0,0.0625757018287838,-0.040953300758516,0.0503156775564332,0.000341092212309109,0,0,0,0,0.0954025292462185,0,0.200131704068108,0.10397484918771,0,0,0,0,0,0,0,0,0,0.0503156775564332,-0.122542828194677,0.00317847258770809,0.0954025292462185,0,0,0,0,0,0,0.178754663990368,-0.152555276445242,0.0251578387782166,0,0.0841611599558909,0,0,0,0,0,0.175894511484222,0,0,0,0.0413750396436731,0,-0.0969923612426051,0,0.0954025292462185,0,0,-0.0418608011412265,0,0,-0.0694124338180944,0,0,0,0,0,0,0,0,0,0,0,0,0,0.012926652508525,-0.170651381053404,0,0.0954025292462185,0,0,0,0,0,0.0485237742039817,0,0.0503156775564332,0,0,-0.0184818444627587,0,0,0,0.367279440495009,0,-0.0649155008401676,0,0,0,0,0,0.0954025292462185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472496928448662,0.00371666114775681,0.0100439134433813,0.0476415968489874,0,0,0.157753710041383,0,0,0,0,0,0,0.0367824452434593,0.0540357068167882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17357587122559,0,0,0,0,0,0.0251578387782166,0.0254200081278802,0,0,0,0,0,0,0,-0.00255536702183901,0,0,-0.0668749710223095,0,0,0.0253474753815302,0,0.0301133692417015,0,0.279543017331544,-0.059344903353722,0.0423901029910983,0,0,0,0.0972905413283642,0.506642701092527,0,0,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170034062061645,0,0,0,0,0,0,0,0,0,0,0.02515783877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|rna_box=117
 
|rna_box=117
 
|rna_catalog_number=SC2625
 
|rna_catalog_number=SC2625
Line 59: Line 82:
 
|rna_tube_id=117D4
 
|rna_tube_id=117D4
 
|rna_weight_ug=10
 
|rna_weight_ug=10
 +
|rnaseq_library_id=SRhi10014.AGTCAA
 
|sample_age=fetal
 
|sample_age=fetal
 +
|sample_category=primary cells
 
|sample_cell_catalog=N/A
 
|sample_cell_catalog=N/A
 
|sample_cell_line=
 
|sample_cell_line=

Latest revision as of 06:26, 17 October 2017

Name:Fibroblast - Gingival, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11961
Sample type:primary cells
Genomic View: UCSC
MicroRNAs:Including candidate novel miRNAs(CAGE samplessRNA samples)
Excluding candidate novel miRNAs(CAGE samplessRNA samples)
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuegum
dev stagefetus
sexunknown
agefetal
cell typefibroblast
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number3540
catalog numberSC2625
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

Accession numbers
MethodSample accession id
CAGE  SAMD00005390
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11961 CAGE DRX008261 DRR009133
Accession ID Hg19

Library idBAMCTSS
CNhs11961 DRZ000558 DRZ001943
Accession ID Hg38

Library idBAMCTSS
CNhs11961 DRZ011908 DRZ013293
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005390
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10014.AGTCAA sRNA-Seq DRX037236 DRR041602
Accession ID Hg19

Library idBAMCTSS
SRhi10014.AGTCAA DRZ007244


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0485
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.523
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0954
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural--0.0562
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19--0.126
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle--0.0209
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0315
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.603
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed--0.095
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte--0.0162
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.681
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0503
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8--0.00525
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0503
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.544
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.174
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0503
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0503
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.0503
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0484
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.174
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.208
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.393
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11961

Jaspar motif P-value
MA0002.2 0.0218
MA0003.1 0.426
MA0004.1 0.506
MA0006.1 0.862
MA0007.1 0.347
MA0009.1 0.718
MA0014.1 0.276
MA0017.1 0.115
MA0018.2 3.5504e-4
MA0019.1 0.0339
MA0024.1 1.45693e-7
MA0025.1 4.84202e-5
MA0027.1 0.675
MA0028.1 0.0862
MA0029.1 0.766
MA0030.1 0.039
MA0031.1 0.0108
MA0035.2 0.0101
MA0038.1 0.106
MA0039.2 0.521
MA0040.1 0.286
MA0041.1 0.21
MA0042.1 0.427
MA0043.1 1.27182e-5
MA0046.1 0.1
MA0047.2 0.17
MA0048.1 1.85358e-5
MA0050.1 0.00522
MA0051.1 0.00637
MA0052.1 0.133
MA0055.1 5.61985e-4
MA0057.1 0.28
MA0058.1 0.181
MA0059.1 0.944
MA0060.1 6.80374e-4
MA0061.1 1.92876e-4
MA0062.2 0.102
MA0065.2 0.357
MA0066.1 0.797
MA0067.1 0.0041
MA0068.1 0.41
MA0069.1 0.399
MA0070.1 0.988
MA0071.1 0.835
MA0072.1 0.385
MA0073.1 0.283
MA0074.1 0.671
MA0076.1 0.631
MA0077.1 0.939
MA0078.1 0.954
MA0079.2 0.0826
MA0080.2 3.2403e-10
MA0081.1 0.048
MA0083.1 0.0878
MA0084.1 0.0398
MA0087.1 0.865
MA0088.1 0.00791
MA0090.1 0.323
MA0091.1 0.706
MA0092.1 0.19
MA0093.1 0.4
MA0099.2 0.0163
MA0100.1 0.144
MA0101.1 2.88886e-4
MA0102.2 0.00117
MA0103.1 0.0344
MA0104.2 0.965
MA0105.1 0.274
MA0106.1 0.327
MA0107.1 3.59626e-7
MA0108.2 0.0173
MA0111.1 0.971
MA0112.2 0.582
MA0113.1 0.917
MA0114.1 0.235
MA0115.1 0.932
MA0116.1 0.916
MA0117.1 0.164
MA0119.1 0.0754
MA0122.1 0.19
MA0124.1 0.658
MA0125.1 0.532
MA0131.1 0.472
MA0135.1 0.131
MA0136.1 4.61585e-10
MA0137.2 0.00857
MA0138.2 0.853
MA0139.1 0.628
MA0140.1 0.0659
MA0141.1 0.679
MA0142.1 0.338
MA0143.1 0.365
MA0144.1 0.0578
MA0145.1 0.122
MA0146.1 0.0798
MA0147.1 0.743
MA0148.1 0.258
MA0149.1 0.232
MA0150.1 0.00845
MA0152.1 0.0871
MA0153.1 0.077
MA0154.1 0.0904
MA0155.1 0.425
MA0156.1 3.0224e-7
MA0157.1 0.00714
MA0159.1 0.00674
MA0160.1 0.182
MA0162.1 0.0141
MA0163.1 0.106
MA0164.1 0.609
MA0258.1 0.876
MA0259.1 0.516



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11961

Novel motif P-value
1 0.891
10 0.0477
100 0.155
101 0.953
102 0.668
103 0.342
104 0.948
105 0.329
106 0.00622
107 0.958
108 0.868
109 0.38
11 0.39
110 0.0228
111 0.598
112 0.552
113 0.0435
114 0.256
115 0.0476
116 0.15
117 0.0733
118 0.456
119 0.643
12 0.597
120 0.142
121 0.728
122 0.0139
123 0.504
124 0.567
125 0.531
126 0.652
127 0.743
128 0.593
129 0.612
13 0.863
130 0.211
131 0.191
132 0.565
133 0.75
134 0.673
135 0.00563
136 0.159
137 0.0703
138 0.481
139 0.00144
14 0.188
140 0.967
141 0.332
142 0.542
143 0.219
144 0.46
145 0.247
146 0.547
147 0.184
148 0.595
149 0.747
15 0.421
150 0.601
151 0.707
152 0.312
153 0.969
154 0.431
155 0.204
156 0.213
157 0.168
158 0.0197
159 0.297
16 0.862
160 0.0666
161 0.716
162 0.098
163 0.623
164 0.219
165 0.788
166 0.667
167 0.99
168 0.363
169 0.801
17 0.601
18 0.774
19 0.239
2 0.838
20 0.431
21 3.83236e-4
22 0.723
23 0.139
24 0.972
25 0.347
26 0.0357
27 0.69
28 0.317
29 0.617
3 0.559
30 0.684
31 0.73
32 0.0698
33 0.429
34 0.275
35 0.341
36 0.41
37 0.349
38 0.563
39 0.859
4 0.0637
40 0.785
41 0.019
42 0.964
43 0.314
44 0.305
45 0.0513
46 0.779
47 0.774
48 0.337
49 0.294
5 0.0921
50 0.354
51 0.722
52 0.172
53 0.659
54 0.694
55 0.949
56 0.985
57 0.405
58 0.166
59 0.986
6 0.439
60 0.0653
61 0.733
62 0.315
63 0.537
64 0.743
65 0.423
66 0.315
67 0.374
68 0.954
69 0.48
7 0.245
70 0.162
71 0.902
72 0.225
73 0.688
74 0.237
75 0.662
76 0.284
77 0.803
78 0.696
79 0.575
8 0.196
80 0.00223
81 0.858
82 0.151
83 0.366
84 0.676
85 0.0956
86 0.147
87 0.344
88 0.206
89 0.336
9 0.408
90 0.518
91 0.673
92 0.245
93 0.292
94 0.783
95 0.213
96 0.512
97 0.633
98 0.291
99 3.25337e-4



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs11961


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002552 (fibroblast of gingiva)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004923 (organ component layer)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001828 (gingiva)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0000166 (oral opening)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000063 (human fibroblast of gingiva sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

CL:0000134 (mesenchymal cell)