FF:11322-117D8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005337 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005337 | ||
|accession_numbers=CAGE;DRX008368;DRR009240;DRZ000665;DRZ002050;DRZ012015;DRZ013400 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037199;DRR041565;DRZ007207 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000548,CL:0000680,CL:0002321,CL:0002371,CL:0000056,CL:0000255,CL:0000515 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000164 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Myoblast%252c%2520donor2.CNhs11965.11322-117D8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Myoblast%252c%2520donor2.CNhs11965.11322-117D8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Myoblast%252c%2520donor2.CNhs11965.11322-117D8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Myoblast%252c%2520donor2.CNhs11965.11322-117D8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Myoblast%252c%2520donor2.CNhs11965.11322-117D8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11322-117D8 | |id=FF:11322-117D8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000164 | ||
|is_obsolete= | |||
|library_id=CNhs11965 | |||
|library_id_phase_based=2:CNhs11965 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11322 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.GTTTCG.11322 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11322 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.GTTTCG.11322 | |||
|name=Myoblast, donor2 | |name=Myoblast, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11965,LSID836,release011,COMPLETED | |profile_hcage=CNhs11965,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10012,,, | |profile_srnaseq=SRhi10012,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0.149512438051623,0,-0.0108055920347636,0,0.147397038071734,0.0405793422855208,0,0,0,0,0,0,0,0,0,0,0,0,0,0.676195413772683,0,0.104278312365855,0,0.0405793422855208,0,0.162567900621426,0,0,0.0756000349528478,0,0,0,0,0,0,0,0,0,0,0.0811586845710415,0,0.412003774349071,0.00114021630240312,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0.0648972509313172,0.0811586845710415,0.0525200768090174,0,0,0.111212997518613,0,0,0,0,0,0,0,0.0460900915306111,0,0,0,0,0,0,0,0,0,0.0280003644446986,0.0747562190258115,0,0.0811586845710415,0,0,0,0.0954943240379968,0.0747562190258115,0,0,-0.0584468268118252,0.145962376906885,0,0.20855662473171,0.0747562190258115,0,-0.0980353512377064,0.147394186363829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220871401976564,0,0,0,0.331767908436008,0.574462346295967,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0.20855662473171,0.149512438051623,0,0.149512438051623,0,0.0811586845710415,0.20855662473171,0,0,0.363709534535768,0.0405793422855208,-0.167150715390248,-0.0623564579524304,0,0,0.0389668381392988,0,0.149512438051623,0,0,0.149512438051623,0,0,0,0,0.0213925710990578,0,-0.0504125515893149,0,0,0.0811586845710415,0,0.0429898838877271,0.00146327246335332,0,0.0531100297559655,0.31874897933152,0,0,0,0,0.0344527751788288,0,-0.120879483793741,0.304373072085471,0,0.052453381353672,-0.04680465889238,0,0,0,-0.12164138980749,-0.276402143676863,0,0,0.106444118954818,0.150296784710671,0,0,-0.391044581551635,0,0.334979466736145,0.117015896425284,0,0.0520799615373905,0,0,0,0,0,0.0811586845710415,0,0,0,0,0,0.200252597225298,0.157988957067458,8.79072711936215e-05,0,0,0.000541406458979682,-0.0867085918310959,0.0811586845710415,0.042327893097255,0.494167542631177,0.079229115651962,0.00235496989510575,-0.166347218293012,0,0.237403228111608,0.0634265118955246,-0.45640275737317,0.105553228552032,-0.066243164800097,0.374825401604037,0,0.173010579579597,0.0298268030772124,0.0099435622338497,0.0954943240379968,0.0052185410439054,0.152744550914106,-0.0960898354724828,0,0,0.00364975809173841,-0.0567631354871037,0,0,-0.183179211115013,-0.0613090336490045,0.097875784998558,0.0882536346946977,0.00088129367029821,-0.0430290614135653,0.244198121668952,0.358662979294629,0.0359704945044427,0.160154563890262,0.00107816344200429,0,-0.00894548739095152,0.0358425657641453,0.11642780129721,-0.355300376289196,0,0.148238943829012,0.192181535812115,0.0405793422855208,0.179378917299529,-0.0182998983203171,0,0,0.300619299009969,0,0,0.125750228405841,0,0.0811586845710415,-0.00782709986691321,0.0253149781237175,-0.0242989368238348,0,-0.0656161210615195,0.0811586845710415,-0.0861709122136745,0,-0.153389772572695,0.00350254059422833,-0.120183657377102,0.0442638556479471,0,0.0190285120812906,0.237969069086822,-0.0206612130633228,0.142412315762146,-0.0584468268118252,-0.142013266623236,0,-0.0183478530495953,0.329096673730489,-0.0202059299615972,-0.0881268324752877,0,0.100081786770352,0.0110567692039066,-0.0323203881436012,-0.0862653357633362,0.0811586845710415,0.0251648457971352,0,-0.247780802138385,0.00472755500454413,-0.227420289410916,0.0704546583480926,-0.230732749848976,0.016961321373171,0,-0.13620902634173,0.31608808418108,0,0,0.0298915826652001,0,0.304369098476311,0.104556592811182,-0.0621379898129666,0.0760204316747377,0,0.112259750014876,0,0.0811586845710415,0.0325626726291045,0.1516172026445,0,-0.0850207067331367,0.0813519866120348,0.0280003644446986,-0.115971073434934,0.260525796889484,0,0.318985969117758,0,0,0.0846268370074007,0.00229328075590418,-0.270922231821811,-0.253326341486756,0.0136189257181203,0.337748291810483,0,0,0.082998030924308,0.0811586845710415,0.0857252481868174,0,0,0.364932917709443,0.190307390371628,0,0.0405793422855208,0,0.032102400347711,0,0,0,0,0,0,0.0131710975955383,-0.0373882041536058,0.297712511039506,0,0.0811586845710415,0,0,0,0,0,0,0,0.741976769716025,0.545770546967427,0.02231746890303,-0.12301741567642,0.0405793422855208,0,0,0,-0.215723402553475,-0.122077877523682,0.0811586845710415,-0.131862706497632,0,0.0405793422855208,0,0,-0.00498230521816984,0,0,0,0,-0.057730457053664,0.147214736238209,0,0,0,0.145275934676034,0,0,0.0811586845710415,0.0901522497313031,-0.0140904944230984,0,0.0263560184659723,0.214044022130934,0,0.107909982648791,0.225353623814919,0,0.114619773323769,-0.033389374738432,-0.601239688898136,0,0,-0.00082133490040398,0,0.0403725037218567,0,0,0.149512438051623,-0.0209247759461169,0,0,0,0,0,0,0.0462112844897279,0.0405793422855208,0,0,0,0,0,0,0.0811586845710415,0,0,0,0.065335487586188,0.0572883813931121,0.149512438051623,0,0,0,0,0,0.0811586845710415,0.154928508312764,0.000919666345307203,0,0,0,0,0.0460900915306111,0,0,0,0.117032727489254,0,0,0,0,0,0.0525200768090174,0,0,0,0,0,0,0,0.109731108215374,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0261933520161748,0.428959503097499,0,0.0811586845710415,0,0,0,0,0,0.147397038071734,0,0.0811586845710415,0,0,-0.0327256891379357,0,0,0,0.408453126498417,0,-0.0108055920347636,0.149512438051623,0,0,0,0,0.149512438051623,0,0,0,0,0,0,0,0,0,0,0,0.130262898444742,0,0,0,0.715922491531066,0,0.197770037773517,0.0853537601579245,0,0,0.130123395111822,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0747562190258115,0.0828085601016629,0,0,0,0,0,0,0,0.162567900621426,0,0,-0.0920328098005262,0,0,0,0,0.149512438051623,0,0.0436695626146208,0.124829316272465,0.0833178272982321,0,0,0,0.075877325962287,0,0,0.0438163651676948,0.0811586845710415,0.658726108070827,0,0,0,0,0,0,0,0,0.20855662473171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.676195413772683,0,0,0,0,0,0,0,0,0,0,0,0,0.104278312365855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0811586845710415,0,0,0,0,0,0,0.136830877454846,0.20855662473171,0,0,0,0,0,0,0.0811586845710415,0,0,0,0,0.0405793422855208,0,0,0,0,0,0,0,0,0,0.00114021630240312,0,0,0,0.397802180164289,0,0,0,0,0,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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=SC3525 | |rna_catalog_number=SC3525 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=117D8 | |rna_tube_id=117D8 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10012.GTTTCG | |||
|sample_age=21 | |sample_age=21 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.24943900629107e-239!GO:0005737;cytoplasm;1.38135819441211e-195!GO:0043226;organelle;8.33614479858184e-192!GO:0043229;intracellular organelle;1.6047830753755e-191!GO:0043231;intracellular membrane-bound organelle;3.04665348394412e-184!GO:0043227;membrane-bound organelle;6.97861938649821e-184!GO:0044444;cytoplasmic part;2.83667154642642e-145!GO:0044422;organelle part;9.4391427274134e-141!GO:0044446;intracellular organelle part;2.63810108371273e-139!GO:0032991;macromolecular complex;1.25352585604156e-96!GO:0044237;cellular metabolic process;2.85415920559607e-84!GO:0044238;primary metabolic process;1.98320315519107e-83!GO:0030529;ribonucleoprotein complex;2.33215202056575e-83!GO:0005515;protein binding;4.97556258006179e-81!GO:0043170;macromolecule metabolic process;3.92958007554195e-77!GO:0043233;organelle lumen;6.00877292230918e-70!GO:0031974;membrane-enclosed lumen;6.00877292230918e-70!GO:0005634;nucleus;1.56427733526874e-66!GO:0044428;nuclear part;7.558788700061e-66!GO:0003723;RNA binding;4.97398666339077e-65!GO:0005739;mitochondrion;6.41635068786324e-64!GO:0031090;organelle membrane;6.56596884077813e-55!GO:0005840;ribosome;2.507313194806e-51!GO:0019538;protein metabolic process;1.70623162971341e-49!GO:0043234;protein complex;5.6707242182851e-49!GO:0006412;translation;1.17403486204639e-47!GO:0016043;cellular component organization and biogenesis;1.30786361102927e-47!GO:0015031;protein transport;9.08134559388356e-45!GO:0003735;structural constituent of ribosome;9.93518098568872e-45!GO:0033036;macromolecule localization;2.1012523398861e-44!GO:0044429;mitochondrial part;3.16952324878975e-44!GO:0044260;cellular macromolecule metabolic process;3.84273005061971e-44!GO:0006396;RNA processing;4.30266028889418e-44!GO:0044267;cellular protein metabolic process;2.61396231763059e-43!GO:0045184;establishment of protein localization;2.2492471414956e-41!GO:0008104;protein localization;2.39131443518891e-41!GO:0043283;biopolymer metabolic process;2.56682272219189e-41!GO:0031967;organelle envelope;1.28179529955375e-40!GO:0031981;nuclear lumen;2.00967342439329e-40!GO:0031975;envelope;3.24986490460023e-40!GO:0009058;biosynthetic process;4.46291904879087e-40!GO:0005829;cytosol;6.21960185379235e-40!GO:0009059;macromolecule biosynthetic process;3.8457328088023e-39!GO:0010467;gene expression;4.07001191740356e-39!GO:0033279;ribosomal subunit;4.54231813229349e-39!GO:0044249;cellular biosynthetic process;4.14348951056291e-36!GO:0046907;intracellular transport;4.58005964982552e-36!GO:0016071;mRNA metabolic process;6.09505410514619e-36!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.31787622467288e-34!GO:0008380;RNA splicing;9.85546990604592e-33!GO:0043228;non-membrane-bound organelle;2.74485055654186e-32!GO:0043232;intracellular non-membrane-bound organelle;2.74485055654186e-32!GO:0006886;intracellular protein transport;1.25477475329903e-30!GO:0006397;mRNA processing;2.45248671541062e-30!GO:0005740;mitochondrial envelope;1.54624617881639e-29!GO:0065003;macromolecular complex assembly;2.27181789220005e-29!GO:0006996;organelle organization and biogenesis;4.88580752722442e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.9482136253006e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.06080909627451e-28!GO:0031966;mitochondrial membrane;7.01127415708066e-28!GO:0019866;organelle inner membrane;5.94490973520927e-27!GO:0022607;cellular component assembly;1.24651307760615e-26!GO:0005743;mitochondrial inner membrane;4.14792438750493e-25!GO:0005654;nucleoplasm;1.77979465661678e-24!GO:0044445;cytosolic part;4.08348417444419e-23!GO:0006119;oxidative phosphorylation;5.21407334007146e-23!GO:0005681;spliceosome;7.87897625282195e-23!GO:0051641;cellular localization;9.45725868589562e-23!GO:0012505;endomembrane system;9.73006741089176e-23!GO:0051649;establishment of cellular localization;1.06206678566143e-22!GO:0005783;endoplasmic reticulum;2.04819249486941e-21!GO:0006457;protein folding;8.18719826046643e-21!GO:0006259;DNA metabolic process;1.16102052986709e-20!GO:0044455;mitochondrial membrane part;2.03499138530882e-20!GO:0015935;small ribosomal subunit;2.63433311481558e-20!GO:0044451;nucleoplasm part;7.639852788771e-20!GO:0015934;large ribosomal subunit;9.27796959484053e-20!GO:0003676;nucleic acid binding;3.04144881281997e-19!GO:0000166;nucleotide binding;7.89310171313245e-19!GO:0048770;pigment granule;1.23152793793883e-18!GO:0042470;melanosome;1.23152793793883e-18!GO:0005794;Golgi apparatus;1.61651072630664e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.69366031646869e-18!GO:0016462;pyrophosphatase activity;1.81090995340863e-18!GO:0031980;mitochondrial lumen;2.08517361114136e-18!GO:0005759;mitochondrial matrix;2.08517361114136e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;2.51696017184675e-18!GO:0017111;nucleoside-triphosphatase activity;4.61723327558816e-18!GO:0044432;endoplasmic reticulum part;1.12411104394877e-17!GO:0005746;mitochondrial respiratory chain;1.24649196804309e-17!GO:0022618;protein-RNA complex assembly;3.05799402517541e-17!GO:0044265;cellular macromolecule catabolic process;9.96614435847228e-17!GO:0005730;nucleolus;1.11669328059637e-16!GO:0008134;transcription factor binding;1.25280104474755e-16!GO:0016070;RNA metabolic process;2.38540128358601e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.70725182476954e-16!GO:0006512;ubiquitin cycle;4.20848165930773e-16!GO:0051186;cofactor metabolic process;4.26401624863314e-16!GO:0043285;biopolymer catabolic process;5.56050625919537e-16!GO:0007049;cell cycle;9.25916024928059e-16!GO:0016874;ligase activity;1.06038962544982e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.31196410934603e-15!GO:0003954;NADH dehydrogenase activity;1.31196410934603e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.31196410934603e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;1.44347514670295e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.47583777753024e-15!GO:0019941;modification-dependent protein catabolic process;2.88762830803154e-15!GO:0043632;modification-dependent macromolecule catabolic process;2.88762830803154e-15!GO:0006511;ubiquitin-dependent protein catabolic process;3.14294882437515e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.26931448224164e-15!GO:0006605;protein targeting;3.69937849812561e-15!GO:0044257;cellular protein catabolic process;3.9953754611088e-15!GO:0008135;translation factor activity, nucleic acid binding;5.23316566937029e-15!GO:0009057;macromolecule catabolic process;5.62705892463608e-15!GO:0044248;cellular catabolic process;8.22904432784644e-15!GO:0048193;Golgi vesicle transport;2.27908149026107e-14!GO:0005761;mitochondrial ribosome;2.88886913527295e-14!GO:0000313;organellar ribosome;2.88886913527295e-14!GO:0030964;NADH dehydrogenase complex (quinone);7.14325512242532e-14!GO:0045271;respiratory chain complex I;7.14325512242532e-14!GO:0005747;mitochondrial respiratory chain complex I;7.14325512242532e-14!GO:0042775;organelle ATP synthesis coupled electron transport;7.17007275643529e-14!GO:0042773;ATP synthesis coupled electron transport;7.17007275643529e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.48332167087405e-14!GO:0051082;unfolded protein binding;1.13918607181627e-13!GO:0030163;protein catabolic process;1.86044139631553e-13!GO:0016192;vesicle-mediated transport;1.87017804676407e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.28946578043445e-13!GO:0043412;biopolymer modification;3.86567844862073e-13!GO:0017076;purine nucleotide binding;4.6504559690252e-13!GO:0032553;ribonucleotide binding;5.39845020786392e-13!GO:0032555;purine ribonucleotide binding;5.39845020786392e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.94250135450359e-13!GO:0005793;ER-Golgi intermediate compartment;1.29900148485618e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.08935162772706e-12!GO:0006732;coenzyme metabolic process;2.14690104129086e-12!GO:0042254;ribosome biogenesis and assembly;2.14690104129086e-12!GO:0003743;translation initiation factor activity;3.37207579734534e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;4.50384003268728e-12!GO:0000375;RNA splicing, via transesterification reactions;4.50384003268728e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.50384003268728e-12!GO:0005635;nuclear envelope;4.92502638333213e-12!GO:0005789;endoplasmic reticulum membrane;6.51234124281122e-12!GO:0022402;cell cycle process;7.32573843939177e-12!GO:0006464;protein modification process;7.6129566966692e-12!GO:0031965;nuclear membrane;1.8170414680517e-11!GO:0005524;ATP binding;2.07915284269832e-11!GO:0006974;response to DNA damage stimulus;2.93945980107831e-11!GO:0000278;mitotic cell cycle;3.02499366506276e-11!GO:0032559;adenyl ribonucleotide binding;4.30744717500196e-11!GO:0016604;nuclear body;4.56765587435907e-11!GO:0030554;adenyl nucleotide binding;5.25568589066929e-11!GO:0006413;translational initiation;6.02286835112221e-11!GO:0009055;electron carrier activity;7.22397181523624e-11!GO:0003712;transcription cofactor activity;8.4981301809917e-11!GO:0044453;nuclear membrane part;2.08226413319143e-10!GO:0012501;programmed cell death;3.07278186592039e-10!GO:0009259;ribonucleotide metabolic process;3.1287726183413e-10!GO:0006163;purine nucleotide metabolic process;3.13247268078151e-10!GO:0042623;ATPase activity, coupled;3.20897937601708e-10!GO:0016887;ATPase activity;4.83200778345919e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.1276315804493e-10!GO:0006446;regulation of translational initiation;6.18634457176862e-10!GO:0008565;protein transporter activity;6.66699009514179e-10!GO:0006915;apoptosis;6.85458198589874e-10!GO:0048523;negative regulation of cellular process;6.90574561750635e-10!GO:0009150;purine ribonucleotide metabolic process;8.09007683020431e-10!GO:0043687;post-translational protein modification;1.06758271819776e-09!GO:0006913;nucleocytoplasmic transport;1.65211086851625e-09!GO:0008219;cell death;2.19323189750047e-09!GO:0016265;death;2.19323189750047e-09!GO:0006164;purine nucleotide biosynthetic process;2.81952257694433e-09!GO:0051169;nuclear transport;3.60347349683454e-09!GO:0009199;ribonucleoside triphosphate metabolic process;3.92462715924671e-09!GO:0009141;nucleoside triphosphate metabolic process;4.77680331725502e-09!GO:0016607;nuclear speck;5.3891604418624e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.8653510659919e-09!GO:0005768;endosome;5.87965426018715e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.90887714699226e-09!GO:0009144;purine nucleoside triphosphate metabolic process;5.90887714699226e-09!GO:0006461;protein complex assembly;6.08838959080952e-09!GO:0006281;DNA repair;6.39826352699813e-09!GO:0009152;purine ribonucleotide biosynthetic process;7.12105337220867e-09!GO:0006366;transcription from RNA polymerase II promoter;7.68589915184564e-09!GO:0009260;ribonucleotide biosynthetic process;8.02284303314435e-09!GO:0044431;Golgi apparatus part;9.20049935031988e-09!GO:0008639;small protein conjugating enzyme activity;1.43239592125891e-08!GO:0019829;cation-transporting ATPase activity;1.4462682556157e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.45369354578431e-08!GO:0050794;regulation of cellular process;1.45369354578431e-08!GO:0004386;helicase activity;1.74120304282853e-08!GO:0009056;catabolic process;1.75079388299473e-08!GO:0030120;vesicle coat;1.80611583324271e-08!GO:0030662;coated vesicle membrane;1.80611583324271e-08!GO:0015986;ATP synthesis coupled proton transport;1.81383403265321e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.81383403265321e-08!GO:0009060;aerobic respiration;1.91354963707621e-08!GO:0005788;endoplasmic reticulum lumen;1.98161251944395e-08!GO:0051276;chromosome organization and biogenesis;2.20611630376437e-08!GO:0017038;protein import;2.27526927036737e-08!GO:0009719;response to endogenous stimulus;2.33864697295705e-08!GO:0045333;cellular respiration;2.40808543538507e-08!GO:0004842;ubiquitin-protein ligase activity;2.54617579060953e-08!GO:0005694;chromosome;2.72192340380826e-08!GO:0048519;negative regulation of biological process;2.83011135447657e-08!GO:0019787;small conjugating protein ligase activity;2.8673294936318e-08!GO:0046034;ATP metabolic process;2.95117740948702e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;3.28459220272667e-08!GO:0051726;regulation of cell cycle;3.78231487084318e-08!GO:0000074;regulation of progression through cell cycle;3.91098570509664e-08!GO:0009142;nucleoside triphosphate biosynthetic process;4.47751757153336e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.47751757153336e-08!GO:0006399;tRNA metabolic process;4.61766501276859e-08!GO:0005643;nuclear pore;5.15463884180402e-08!GO:0015078;hydrogen ion transmembrane transporter activity;5.5232990240066e-08!GO:0006364;rRNA processing;5.99755497170564e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.71545701917201e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.71545701917201e-08!GO:0006260;DNA replication;8.01967553703435e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.47426156812573e-08!GO:0048475;coated membrane;8.63878236028803e-08!GO:0030117;membrane coat;8.63878236028803e-08!GO:0016491;oxidoreductase activity;9.12139073955067e-08!GO:0065002;intracellular protein transport across a membrane;9.14555203723725e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;9.88921724987259e-08!GO:0006323;DNA packaging;1.0088895274336e-07!GO:0051188;cofactor biosynthetic process;1.03171045613907e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.05901769143068e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.05901769143068e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.05901769143068e-07!GO:0000087;M phase of mitotic cell cycle;1.1076071917926e-07!GO:0008026;ATP-dependent helicase activity;1.31269368042263e-07!GO:0016072;rRNA metabolic process;1.31269368042263e-07!GO:0007067;mitosis;1.59694312574814e-07!GO:0030532;small nuclear ribonucleoprotein complex;2.00871529156325e-07!GO:0043038;amino acid activation;2.17875442280852e-07!GO:0006418;tRNA aminoacylation for protein translation;2.17875442280852e-07!GO:0043039;tRNA aminoacylation;2.17875442280852e-07!GO:0051246;regulation of protein metabolic process;2.65623885236919e-07!GO:0016881;acid-amino acid ligase activity;3.16700337117674e-07!GO:0006754;ATP biosynthetic process;3.17221603053998e-07!GO:0006753;nucleoside phosphate metabolic process;3.17221603053998e-07!GO:0016023;cytoplasmic membrane-bound vesicle;3.27874540085332e-07!GO:0031988;membrane-bound vesicle;3.5092811051189e-07!GO:0022403;cell cycle phase;3.58768693632992e-07!GO:0044427;chromosomal part;3.84804472689747e-07!GO:0006099;tricarboxylic acid cycle;4.99115180018706e-07!GO:0046356;acetyl-CoA catabolic process;4.99115180018706e-07!GO:0016469;proton-transporting two-sector ATPase complex;6.2883402356288e-07!GO:0065004;protein-DNA complex assembly;6.75209185773476e-07!GO:0000139;Golgi membrane;7.75241128415227e-07!GO:0050789;regulation of biological process;8.89265823558509e-07!GO:0043566;structure-specific DNA binding;1.11209179610802e-06!GO:0005773;vacuole;1.17972177675403e-06!GO:0007005;mitochondrion organization and biogenesis;1.31864314198229e-06!GO:0003924;GTPase activity;1.33896685139655e-06!GO:0005798;Golgi-associated vesicle;1.33896685139655e-06!GO:0051301;cell division;1.34568535456771e-06!GO:0006916;anti-apoptosis;1.5117603134832e-06!GO:0051187;cofactor catabolic process;1.58007954448827e-06!GO:0046930;pore complex;1.65036064479409e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.65807869581319e-06!GO:0009117;nucleotide metabolic process;1.68933656966313e-06!GO:0031252;leading edge;1.84218363764847e-06!GO:0044440;endosomal part;1.92887763367692e-06!GO:0010008;endosome membrane;1.92887763367692e-06!GO:0006403;RNA localization;2.02999837884671e-06!GO:0003697;single-stranded DNA binding;2.07739593569353e-06!GO:0016853;isomerase activity;2.16220260504572e-06!GO:0006084;acetyl-CoA metabolic process;2.41199589120032e-06!GO:0043069;negative regulation of programmed cell death;2.49649114653983e-06!GO:0009109;coenzyme catabolic process;2.57189962583608e-06!GO:0050657;nucleic acid transport;2.64454144983963e-06!GO:0051236;establishment of RNA localization;2.64454144983963e-06!GO:0050658;RNA transport;2.64454144983963e-06!GO:0045259;proton-transporting ATP synthase complex;2.700561075994e-06!GO:0031982;vesicle;3.36889093139104e-06!GO:0031324;negative regulation of cellular metabolic process;3.54643470537011e-06!GO:0031410;cytoplasmic vesicle;3.62108260470588e-06!GO:0005667;transcription factor complex;3.68481587916918e-06!GO:0043066;negative regulation of apoptosis;3.73538860424571e-06!GO:0005770;late endosome;3.84824686263097e-06!GO:0000245;spliceosome assembly;3.84824686263097e-06!GO:0016564;transcription repressor activity;3.85078041669799e-06!GO:0042981;regulation of apoptosis;4.07582437855781e-06!GO:0043067;regulation of programmed cell death;4.07582437855781e-06!GO:0015630;microtubule cytoskeleton;4.41697083869589e-06!GO:0006091;generation of precursor metabolites and energy;4.57547228067713e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.06231804504543e-06!GO:0006752;group transfer coenzyme metabolic process;5.45058864201582e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.48765735345087e-06!GO:0051170;nuclear import;5.65871750703415e-06!GO:0009108;coenzyme biosynthetic process;5.82886486427086e-06!GO:0006333;chromatin assembly or disassembly;5.8713389491056e-06!GO:0000151;ubiquitin ligase complex;6.12573007887118e-06!GO:0006793;phosphorus metabolic process;6.63511939333666e-06!GO:0006796;phosphate metabolic process;6.63511939333666e-06!GO:0003714;transcription corepressor activity;7.0428146423298e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;8.2737047274843e-06!GO:0016859;cis-trans isomerase activity;8.47610305381671e-06!GO:0006606;protein import into nucleus;9.40347528018907e-06!GO:0005762;mitochondrial large ribosomal subunit;9.40347528018907e-06!GO:0000315;organellar large ribosomal subunit;9.40347528018907e-06!GO:0000785;chromatin;9.66370715928289e-06!GO:0006613;cotranslational protein targeting to membrane;1.08662208400146e-05!GO:0016740;transferase activity;1.10012020471285e-05!GO:0032446;protein modification by small protein conjugation;1.11473056418041e-05!GO:0008654;phospholipid biosynthetic process;1.11905144454221e-05!GO:0003713;transcription coactivator activity;1.14411398771896e-05!GO:0000323;lytic vacuole;1.18103703203365e-05!GO:0005764;lysosome;1.18103703203365e-05!GO:0045786;negative regulation of progression through cell cycle;1.20803122666648e-05!GO:0004298;threonine endopeptidase activity;1.30577054658949e-05!GO:0016567;protein ubiquitination;1.3178293962611e-05!GO:0019867;outer membrane;1.56688502658929e-05!GO:0008092;cytoskeletal protein binding;1.6548047794261e-05!GO:0005769;early endosome;1.71947951216856e-05!GO:0019899;enzyme binding;1.88319156092622e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.99464920570243e-05!GO:0031968;organelle outer membrane;2.10586274222029e-05!GO:0009892;negative regulation of metabolic process;2.23136769332565e-05!GO:0015980;energy derivation by oxidation of organic compounds;2.25876381853078e-05!GO:0030133;transport vesicle;2.31557172997639e-05!GO:0016787;hydrolase activity;3.1462560967974e-05!GO:0016563;transcription activator activity;3.28573578991433e-05!GO:0030867;rough endoplasmic reticulum membrane;3.50731713807658e-05!GO:0019843;rRNA binding;3.57925125581847e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.74982821769996e-05!GO:0016310;phosphorylation;3.98616095194912e-05!GO:0043623;cellular protein complex assembly;4.0134416533078e-05!GO:0051789;response to protein stimulus;4.07018440114928e-05!GO:0006986;response to unfolded protein;4.07018440114928e-05!GO:0016568;chromatin modification;4.12384689089301e-05!GO:0016779;nucleotidyltransferase activity;4.36527179833133e-05!GO:0045454;cell redox homeostasis;4.44592529046067e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.55960767799998e-05!GO:0005791;rough endoplasmic reticulum;5.32755953252546e-05!GO:0000279;M phase;5.37357900125052e-05!GO:0003724;RNA helicase activity;5.3939096007168e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.40163334596055e-05!GO:0051028;mRNA transport;5.41499486792075e-05!GO:0008361;regulation of cell size;6.01126724306714e-05!GO:0005813;centrosome;6.22251122900504e-05!GO:0005905;coated pit;6.85865440544997e-05!GO:0030036;actin cytoskeleton organization and biogenesis;7.24219625706171e-05!GO:0016049;cell growth;8.52550525817101e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.57176747346896e-05!GO:0006334;nucleosome assembly;9.47388305287428e-05!GO:0005741;mitochondrial outer membrane;9.47877265852652e-05!GO:0033116;ER-Golgi intermediate compartment membrane;9.63204699494261e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;9.87805197219437e-05!GO:0005048;signal sequence binding;0.000105111235365897!GO:0007010;cytoskeleton organization and biogenesis;0.00011533633585888!GO:0005815;microtubule organizing center;0.000121287041820247!GO:0016481;negative regulation of transcription;0.000123857387034863!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000125163130966004!GO:0030029;actin filament-based process;0.000145685538980852!GO:0051427;hormone receptor binding;0.000162899751669842!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000195100635549336!GO:0031497;chromatin assembly;0.000201542781251484!GO:0044262;cellular carbohydrate metabolic process;0.000220087120962874!GO:0001558;regulation of cell growth;0.000230119198290786!GO:0043021;ribonucleoprotein binding;0.000239287741929503!GO:0051329;interphase of mitotic cell cycle;0.000247822623159779!GO:0000314;organellar small ribosomal subunit;0.000260621344919443!GO:0005763;mitochondrial small ribosomal subunit;0.000260621344919443!GO:0019222;regulation of metabolic process;0.000273056229634506!GO:0006612;protein targeting to membrane;0.000278243996957562!GO:0005525;GTP binding;0.000293169987434421!GO:0035257;nuclear hormone receptor binding;0.000334113018785243!GO:0005885;Arp2/3 protein complex;0.000346229812667173!GO:0046474;glycerophospholipid biosynthetic process;0.000349019874356043!GO:0065007;biological regulation;0.000351096206565197!GO:0008250;oligosaccharyl transferase complex;0.000380280007785222!GO:0004576;oligosaccharyl transferase activity;0.000384393867161146!GO:0016044;membrane organization and biogenesis;0.000386455146426948!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000428347108241559!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00044100320518003!GO:0015399;primary active transmembrane transporter activity;0.00044100320518003!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000454383353143537!GO:0051325;interphase;0.000463517964246245!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000490881618826497!GO:0048522;positive regulation of cellular process;0.000508127596418777!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000512612281443056!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000564375866819896!GO:0003729;mRNA binding;0.000622002222588094!GO:0003899;DNA-directed RNA polymerase activity;0.000630997023525698!GO:0030663;COPI coated vesicle membrane;0.000641284140789613!GO:0030126;COPI vesicle coat;0.000641284140789613!GO:0005819;spindle;0.000641309886118426!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000712174730777822!GO:0051920;peroxiredoxin activity;0.000883607371195951!GO:0043681;protein import into mitochondrion;0.000968059867719316!GO:0006626;protein targeting to mitochondrion;0.000985372969926583!GO:0030658;transport vesicle membrane;0.000985372969926583!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00103449477846226!GO:0046467;membrane lipid biosynthetic process;0.00105985814314661!GO:0030132;clathrin coat of coated pit;0.00107293724518252!GO:0007243;protein kinase cascade;0.00109826658647772!GO:0018196;peptidyl-asparagine modification;0.00114235355209316!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00114235355209316!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00116991369435642!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00116991369435642!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00116991369435642!GO:0001726;ruffle;0.00119615536977423!GO:0030137;COPI-coated vesicle;0.00126707286052229!GO:0007050;cell cycle arrest;0.0012874745222865!GO:0051252;regulation of RNA metabolic process;0.00129913694891816!GO:0008047;enzyme activator activity;0.00131663228370249!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00138012410792092!GO:0006891;intra-Golgi vesicle-mediated transport;0.00147644749905075!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0014771311261231!GO:0006261;DNA-dependent DNA replication;0.00150040849614346!GO:0006414;translational elongation;0.00152533859827617!GO:0008186;RNA-dependent ATPase activity;0.00157627565608265!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0015850130428671!GO:0006402;mRNA catabolic process;0.00169752207256788!GO:0004177;aminopeptidase activity;0.00172562293519113!GO:0008610;lipid biosynthetic process;0.0017633621322544!GO:0022890;inorganic cation transmembrane transporter activity;0.00176496477065447!GO:0032561;guanyl ribonucleotide binding;0.00182790127882045!GO:0019001;guanyl nucleotide binding;0.00182790127882045!GO:0000059;protein import into nucleus, docking;0.00184613200326479!GO:0031072;heat shock protein binding;0.00193301587848718!GO:0009165;nucleotide biosynthetic process;0.00199961951533211!GO:0043284;biopolymer biosynthetic process;0.00202253603669793!GO:0043488;regulation of mRNA stability;0.0020610896320346!GO:0043487;regulation of RNA stability;0.0020610896320346!GO:0003779;actin binding;0.00208871785753402!GO:0030176;integral to endoplasmic reticulum membrane;0.00227698710144678!GO:0048500;signal recognition particle;0.00237377571945898!GO:0065009;regulation of a molecular function;0.00237377571945898!GO:0008139;nuclear localization sequence binding;0.00239567938400357!GO:0048471;perinuclear region of cytoplasm;0.00244384325555777!GO:0046489;phosphoinositide biosynthetic process;0.00244384325555777!GO:0006839;mitochondrial transport;0.00246474659109551!GO:0030660;Golgi-associated vesicle membrane;0.00254266449506714!GO:0015992;proton transport;0.00259533150442046!GO:0030118;clathrin coat;0.00259659720157211!GO:0003690;double-stranded DNA binding;0.00259659720157211!GO:0042802;identical protein binding;0.00265502934165935!GO:0006818;hydrogen transport;0.00276604154583424!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0029390774822688!GO:0001952;regulation of cell-matrix adhesion;0.00299061349187744!GO:0016363;nuclear matrix;0.00309280380684276!GO:0030134;ER to Golgi transport vesicle;0.00317093018675186!GO:0007006;mitochondrial membrane organization and biogenesis;0.00318094462386494!GO:0051287;NAD binding;0.00324726904802094!GO:0016197;endosome transport;0.00332353272258827!GO:0043492;ATPase activity, coupled to movement of substances;0.00336017464819998!GO:0030027;lamellipodium;0.00339566162578442!GO:0005774;vacuolar membrane;0.00350967671776815!GO:0044452;nucleolar part;0.00365090850887165!GO:0006650;glycerophospholipid metabolic process;0.00377954145446271!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00406399012983657!GO:0051168;nuclear export;0.0041252010586023!GO:0004004;ATP-dependent RNA helicase activity;0.00413646789353054!GO:0031902;late endosome membrane;0.00422062411380524!GO:0030127;COPII vesicle coat;0.00424905072135455!GO:0012507;ER to Golgi transport vesicle membrane;0.00424905072135455!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00429480679693274!GO:0015002;heme-copper terminal oxidase activity;0.00429480679693274!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00429480679693274!GO:0004129;cytochrome-c oxidase activity;0.00429480679693274!GO:0006509;membrane protein ectodomain proteolysis;0.00467917395045667!GO:0033619;membrane protein proteolysis;0.00467917395045667!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00471157181914116!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00471157181914116!GO:0006740;NADPH regeneration;0.00477054735758928!GO:0006098;pentose-phosphate shunt;0.00477054735758928!GO:0016126;sterol biosynthetic process;0.00481459731668827!GO:0051128;regulation of cellular component organization and biogenesis;0.00482420176729294!GO:0017166;vinculin binding;0.00482420176729294!GO:0040008;regulation of growth;0.00504294963697492!GO:0031625;ubiquitin protein ligase binding;0.00532194248851131!GO:0006383;transcription from RNA polymerase III promoter;0.00544872111064849!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00545267662857012!GO:0030659;cytoplasmic vesicle membrane;0.00545267662857012!GO:0035258;steroid hormone receptor binding;0.00545267662857012!GO:0033673;negative regulation of kinase activity;0.00545267662857012!GO:0006469;negative regulation of protein kinase activity;0.00545267662857012!GO:0005096;GTPase activator activity;0.00559719412940557!GO:0006401;RNA catabolic process;0.00565295179909998!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00569550506446798!GO:0045047;protein targeting to ER;0.00569550506446798!GO:0031543;peptidyl-proline dioxygenase activity;0.00572897043205834!GO:0008180;signalosome;0.00590356511387503!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00597519004463658!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00609413773457807!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00609413773457807!GO:0006595;polyamine metabolic process;0.00613044364335167!GO:0007051;spindle organization and biogenesis;0.00620977598339815!GO:0030521;androgen receptor signaling pathway;0.0062383777507735!GO:0007264;small GTPase mediated signal transduction;0.0063506147364097!GO:0000075;cell cycle checkpoint;0.00636307889944963!GO:0008312;7S RNA binding;0.00657848412596817!GO:0006352;transcription initiation;0.00670221353758884!GO:0006979;response to oxidative stress;0.00672825146002501!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00676477251386134!GO:0051348;negative regulation of transferase activity;0.00695761712604939!GO:0046483;heterocycle metabolic process;0.00703734305400127!GO:0016408;C-acyltransferase activity;0.00706575081582504!GO:0030880;RNA polymerase complex;0.00715247247897296!GO:0019798;procollagen-proline dioxygenase activity;0.0072440406620001!GO:0045941;positive regulation of transcription;0.00736231257829338!GO:0006950;response to stress;0.00747153943809141!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00751689838780689!GO:0005869;dynactin complex;0.00759027376485062!GO:0030041;actin filament polymerization;0.00777787152857571!GO:0031418;L-ascorbic acid binding;0.00789134748146154!GO:0007034;vacuolar transport;0.00793435904348561!GO:0005684;U2-dependent spliceosome;0.00819702578254309!GO:0048468;cell development;0.00819702578254309!GO:0044433;cytoplasmic vesicle part;0.0089084525409879!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00898369856160086!GO:0048487;beta-tubulin binding;0.00899474315627769!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00903650238913535!GO:0005637;nuclear inner membrane;0.00910882894629826!GO:0030125;clathrin vesicle coat;0.00911414195581911!GO:0030665;clathrin coated vesicle membrane;0.00911414195581911!GO:0003678;DNA helicase activity;0.00920596323969076!GO:0044437;vacuolar part;0.00923047751719226!GO:0051052;regulation of DNA metabolic process;0.0097012632265644!GO:0051087;chaperone binding;0.0097108281987047!GO:0030119;AP-type membrane coat adaptor complex;0.00980275316680313!GO:0005765;lysosomal membrane;0.00989307732845272!GO:0043022;ribosome binding;0.0100709573839676!GO:0004674;protein serine/threonine kinase activity;0.0102898059830975!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0104634888539572!GO:0005862;muscle thin filament tropomyosin;0.0110656908766246!GO:0048144;fibroblast proliferation;0.0111516402360941!GO:0048145;regulation of fibroblast proliferation;0.0111516402360941!GO:0006118;electron transport;0.0111757015319716!GO:0045893;positive regulation of transcription, DNA-dependent;0.0111901447647141!GO:0045045;secretory pathway;0.0119762081015396!GO:0045892;negative regulation of transcription, DNA-dependent;0.012069606078776!GO:0051540;metal cluster binding;0.0120729115757839!GO:0051536;iron-sulfur cluster binding;0.0120729115757839!GO:0007041;lysosomal transport;0.0121695098383433!GO:0003746;translation elongation factor activity;0.0125177672063573!GO:0050662;coenzyme binding;0.0126998752301763!GO:0015631;tubulin binding;0.0130174765433283!GO:0000339;RNA cap binding;0.013053960892185!GO:0000049;tRNA binding;0.0130812020468551!GO:0030518;steroid hormone receptor signaling pathway;0.0131889806206793!GO:0051539;4 iron, 4 sulfur cluster binding;0.0131959879026793!GO:0031323;regulation of cellular metabolic process;0.0132231057561018!GO:0006778;porphyrin metabolic process;0.0132231057561018!GO:0033013;tetrapyrrole metabolic process;0.0132231057561018!GO:0030032;lamellipodium biogenesis;0.0137537908681077!GO:0006897;endocytosis;0.01398004538645!GO:0010324;membrane invagination;0.01398004538645!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0142209492209526!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0142516510420598!GO:0000428;DNA-directed RNA polymerase complex;0.0142516510420598!GO:0030833;regulation of actin filament polymerization;0.0142924884552438!GO:0048146;positive regulation of fibroblast proliferation;0.0143707286186807!GO:0007040;lysosome organization and biogenesis;0.014545548142531!GO:0000082;G1/S transition of mitotic cell cycle;0.0146426651658047!GO:0008168;methyltransferase activity;0.0148719851357173!GO:0006302;double-strand break repair;0.0149648267012567!GO:0022415;viral reproductive process;0.0149712229290308!GO:0006892;post-Golgi vesicle-mediated transport;0.0151899131764165!GO:0005099;Ras GTPase activator activity;0.0152749188660937!GO:0031901;early endosome membrane;0.0153349207757752!GO:0016741;transferase activity, transferring one-carbon groups;0.0153681402929005!GO:0030131;clathrin adaptor complex;0.0154980884944152!GO:0031529;ruffle organization and biogenesis;0.0158999934421038!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0159088678271352!GO:0033043;regulation of organelle organization and biogenesis;0.0159088678271352!GO:0006695;cholesterol biosynthetic process;0.0159286446854192!GO:0003711;transcription elongation regulator activity;0.0160129913470428!GO:0016272;prefoldin complex;0.0161000496550631!GO:0005832;chaperonin-containing T-complex;0.0161319000594421!GO:0012506;vesicle membrane;0.0161768570443945!GO:0007033;vacuole organization and biogenesis;0.0162988212167805!GO:0035035;histone acetyltransferase binding;0.0162988212167805!GO:0006007;glucose catabolic process;0.016348808405262!GO:0005874;microtubule;0.0170804555616954!GO:0031124;mRNA 3'-end processing;0.0173450202688038!GO:0006497;protein amino acid lipidation;0.0175677354411387!GO:0003684;damaged DNA binding;0.0175747558686454!GO:0003702;RNA polymerase II transcription factor activity;0.0181414013486975!GO:0050681;androgen receptor binding;0.0182098141432202!GO:0008022;protein C-terminus binding;0.0187636433322858!GO:0005657;replication fork;0.0187981172502582!GO:0043433;negative regulation of transcription factor activity;0.0190735210616146!GO:0000776;kinetochore;0.0194636255127034!GO:0006289;nucleotide-excision repair;0.0196467087111729!GO:0008154;actin polymerization and/or depolymerization;0.0198184445096904!GO:0048518;positive regulation of biological process;0.0198469032369776!GO:0030384;phosphoinositide metabolic process;0.019873893065475!GO:0008033;tRNA processing;0.0200410433156495!GO:0042158;lipoprotein biosynthetic process;0.0205366130700687!GO:0006506;GPI anchor biosynthetic process;0.0208438737923684!GO:0008094;DNA-dependent ATPase activity;0.0209885956228085!GO:0008286;insulin receptor signaling pathway;0.0211006180790255!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0212763033124266!GO:0006350;transcription;0.0213394016736209!GO:0006643;membrane lipid metabolic process;0.0213394016736209!GO:0032508;DNA duplex unwinding;0.021645086823372!GO:0032392;DNA geometric change;0.021645086823372!GO:0009116;nucleoside metabolic process;0.022015387228337!GO:0006607;NLS-bearing substrate import into nucleus;0.0231654641313277!GO:0032984;macromolecular complex disassembly;0.0240791907249682!GO:0042168;heme metabolic process;0.0243288374338958!GO:0046519;sphingoid metabolic process;0.0244918300338452!GO:0006739;NADP metabolic process;0.0245733594435846!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0246399023588331!GO:0045792;negative regulation of cell size;0.0246759324767682!GO:0050811;GABA receptor binding;0.0253688174872311!GO:0051101;regulation of DNA binding;0.0258017374193474!GO:0006672;ceramide metabolic process;0.0270127163463594!GO:0033559;unsaturated fatty acid metabolic process;0.0272602599961122!GO:0006636;unsaturated fatty acid biosynthetic process;0.0272602599961122!GO:0006354;RNA elongation;0.0272602599961122!GO:0015629;actin cytoskeleton;0.0273360309109905!GO:0030308;negative regulation of cell growth;0.0274474335071035!GO:0006779;porphyrin biosynthetic process;0.0274474335071035!GO:0033014;tetrapyrrole biosynthetic process;0.0274474335071035!GO:0050790;regulation of catalytic activity;0.0279737644157848!GO:0022408;negative regulation of cell-cell adhesion;0.0283516896833806!GO:0031301;integral to organelle membrane;0.028482554732211!GO:0003682;chromatin binding;0.028482554732211!GO:0000287;magnesium ion binding;0.0286050902540162!GO:0000209;protein polyubiquitination;0.0287899449010924!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0288326122970372!GO:0046870;cadmium ion binding;0.0290477023170353!GO:0006505;GPI anchor metabolic process;0.0290559059432594!GO:0000786;nucleosome;0.0290659229859126!GO:0030508;thiol-disulfide exchange intermediate activity;0.0290962870634709!GO:0008632;apoptotic program;0.0290962870634709!GO:0003756;protein disulfide isomerase activity;0.0293977880645969!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0293977880645969!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0294599211404908!GO:0007265;Ras protein signal transduction;0.0298277085750128!GO:0006376;mRNA splice site selection;0.0298277085750128!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0298277085750128!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0301273861743925!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0302497236428871!GO:0007160;cell-matrix adhesion;0.0305335115849441!GO:0000792;heterochromatin;0.0312821089005768!GO:0006268;DNA unwinding during replication;0.0314948077909098!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0315318879423495!GO:0009303;rRNA transcription;0.0316319614748689!GO:0006611;protein export from nucleus;0.0326882134689751!GO:0019752;carboxylic acid metabolic process;0.0327304063188793!GO:0031589;cell-substrate adhesion;0.032820657523852!GO:0031123;RNA 3'-end processing;0.032820657523852!GO:0005758;mitochondrial intermembrane space;0.0328460053244298!GO:0005100;Rho GTPase activator activity;0.0328460053244298!GO:0005801;cis-Golgi network;0.0334599227017289!GO:0004287;prolyl oligopeptidase activity;0.0338381248204143!GO:0006082;organic acid metabolic process;0.0339284137751028!GO:0030140;trans-Golgi network transport vesicle;0.0340100936021444!GO:0009112;nucleobase metabolic process;0.0340100936021444!GO:0016860;intramolecular oxidoreductase activity;0.0349109404547966!GO:0051059;NF-kappaB binding;0.0352906925682578!GO:0043241;protein complex disassembly;0.03586321981383!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0358755577620733!GO:0007021;tubulin folding;0.0365189440298254!GO:0007052;mitotic spindle organization and biogenesis;0.0367654476575788!GO:0000775;chromosome, pericentric region;0.0367978928116947!GO:0043624;cellular protein complex disassembly;0.0368284104513375!GO:0004527;exonuclease activity;0.0368973661987671!GO:0006635;fatty acid beta-oxidation;0.0369633779412602!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0378857307099501!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0380655952762488!GO:0030984;kininogen binding;0.0393383656552956!GO:0004213;cathepsin B activity;0.0393383656552956!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0393383656552956!GO:0030911;TPR domain binding;0.0394969600130426!GO:0006417;regulation of translation;0.0394969600130426!GO:0045334;clathrin-coated endocytic vesicle;0.0396479742262078!GO:0019206;nucleoside kinase activity;0.0397860356985263!GO:0008147;structural constituent of bone;0.0399303864870298!GO:0047485;protein N-terminus binding;0.0405600155362742!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0410252719581461!GO:0007030;Golgi organization and biogenesis;0.0410581162240477!GO:0005784;translocon complex;0.0412017025254201!GO:0016251;general RNA polymerase II transcription factor activity;0.0412490700246664!GO:0030522;intracellular receptor-mediated signaling pathway;0.0412974054672871!GO:0005811;lipid particle;0.0416640028792582!GO:0050178;phenylpyruvate tautomerase activity;0.0416640028792582!GO:0016791;phosphoric monoester hydrolase activity;0.0420794727406776!GO:0040029;regulation of gene expression, epigenetic;0.0421021139353576!GO:0008538;proteasome activator activity;0.0423871208261371!GO:0004003;ATP-dependent DNA helicase activity;0.0424806008966551!GO:0051098;regulation of binding;0.0427089238289335!GO:0006405;RNA export from nucleus;0.0444926169502919!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.044864837963442!GO:0031371;ubiquitin conjugating enzyme complex;0.0458722894840929!GO:0001953;negative regulation of cell-matrix adhesion;0.0459164515967138!GO:0030100;regulation of endocytosis;0.0460214231799971!GO:0008287;protein serine/threonine phosphatase complex;0.0460214231799971!GO:0051235;maintenance of localization;0.0471689862844865!GO:0007569;cell aging;0.0472093138632739!GO:0005669;transcription factor TFIID complex;0.0474528773209259!GO:0015036;disulfide oxidoreductase activity;0.0477446823272288!GO:0016584;nucleosome positioning;0.0484253674721757!GO:0006378;mRNA polyadenylation;0.0486902305533745!GO:0022406;membrane docking;0.049353479341095!GO:0048278;vesicle docking;0.049353479341095!GO:0006783;heme biosynthetic process;0.049353479341095!GO:0009166;nucleotide catabolic process;0.0496515353722254!GO:0031461;cullin-RING ubiquitin ligase complex;0.0496708917451354!GO:0006275;regulation of DNA replication;0.0498927331346746 | |||
|sample_id=11322 | |sample_id=11322 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=skeletal muscle | |sample_tissue=skeletal muscle | ||
|top_motifs=RXR{A,B,G}:1.79752764381;EVI1:1.60281327418;UFEwm:1.59232010503;NKX2-2,8:1.58204125151;ALX4:1.53731240859;FOXL1:1.52401380065;GZF1:1.47676653611;NKX3-1:1.18766749632;NR6A1:1.17292534758;AIRE:1.15680895362;HES1:1.14722308634;POU3F1..4:1.09176204567;T:1.06975224449;PAX1,9:1.04541572748;GATA4:1.01963273924;ZBTB16:0.922031036247;HOX{A4,D4}:0.891258944771;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.838943236422;EBF1:0.829856980168;ZNF238:0.829630401438;RXRA_VDR{dimer}:0.818854632636;TFCP2:0.789211936133;NR3C1:0.767601635243;KLF4:0.745675103315;TFAP4:0.724323225563;GFI1B:0.71948666495;TEAD1:0.717751962706;TLX1..3_NFIC{dimer}:0.695386796345;GTF2A1,2:0.684384751213;bHLH_family:0.653420740903;AR:0.622452983036;ESRRA:0.617618378581;ONECUT1,2:0.572717816761;ESR1:0.571824024854;SRF:0.568855792276;HMGA1,2:0.561723428242;ATF6:0.560830102536;EN1,2:0.559644220238;TBX4,5:0.559053790912;NANOG{mouse}:0.533120485612;IKZF1:0.520798491458;NFE2L1:0.49568684605;MAFB:0.486629786434;HMX1:0.484201857842;ARID5B:0.481269324467;TAL1_TCF{3,4,12}:0.47022078178;FOXD3:0.459551376609;GLI1..3:0.453675801355;HIF1A:0.449215264017;TOPORS:0.436693810399;YY1:0.413510210065;NKX2-1,4:0.408812363297;TFAP2{A,C}:0.389331938325;ZIC1..3:0.360311050122;MTF1:0.35609285074;ZNF384:0.344916030221;IKZF2:0.342598517126;MZF1:0.337690638325;MAZ:0.33337161282;LHX3,4:0.330562435412;HIC1:0.328045587251;NR1H4:0.324256600002;ZBTB6:0.322472294597;POU6F1:0.299763318043;FOXP1:0.275757607651;ELK1,4_GABP{A,B1}:0.271750088179;MYOD1:0.269619526721;SREBF1,2:0.268153295779;SMAD1..7,9:0.255945415219;NFATC1..3:0.242143991962;NRF1:0.236370428355;XCPE1{core}:0.227144355574;NHLH1,2:0.225344133707;SPZ1:0.222647262615;ZNF143:0.210429315602;XBP1:0.201188408879;GFI1:0.186883662126;PDX1:0.185554969138;RREB1:0.169680920914;TBP:0.155253969806;NKX6-1,2:0.153216536;REST:0.1516537524;EGR1..3:0.14318723442;MYBL2:0.142372310595;PAX5:0.138288806346;PATZ1:0.13418528526;HOX{A5,B5}:0.127058081733;GTF2I:0.12550845943;MED-1{core}:0.121274950849;HBP1_HMGB_SSRP1_UBTF:0.115021489409;ZNF423:0.110924220095;PRDM1:0.0880999120706;TP53:0.0847255994967;BACH2:0.0795304354162;PAX4:0.0722715263383;TFAP2B:0.0680185200583;FOXM1:0.0540632369719;MTE{core}:0.0411203635784;ZFP161:0.0309576250556;HNF1A:0.0247003917108;MYFfamily:0.0125185773475;LMO2:0.00458871368427;HSF1,2:-0.0107430825303;HOX{A6,A7,B6,B7}:-0.0218394058009;CDC5L:-0.0241992427063;NKX3-2:-0.029391517106;HAND1,2:-0.03189646725;HNF4A_NR2F1,2:-0.0485408912509;FOS_FOS{B,L1}_JUN{B,D}:-0.051930084228;NFIX:-0.0564031936839;STAT2,4,6:-0.0700333445159;NFE2L2:-0.0754861194807;PAX8:-0.0851465487191;DMAP1_NCOR{1,2}_SMARC:-0.0968002624348;SP1:-0.105552853778;HLF:-0.1121737895;STAT5{A,B}:-0.112196643447;PITX1..3:-0.121628875731;PPARG:-0.122472224251;E2F1..5:-0.136272974138;MEF2{A,B,C,D}:-0.141254822489;STAT1,3:-0.14648966098;TFDP1:-0.154121732783;POU1F1:-0.177740457729;SOX5:-0.194288816743;MYB:-0.20343982206;AHR_ARNT_ARNT2:-0.207859904857;FOXO1,3,4:-0.219519823546;CDX1,2,4:-0.230787088981;PAX3,7:-0.233001579135;TEF:-0.233500130032;CEBPA,B_DDIT3:-0.257922888242;LEF1_TCF7_TCF7L1,2:-0.271654423324;TLX2:-0.277872505581;SOX17:-0.279701477304;FOSL2:-0.280770611861;NFE2:-0.285622200268;IRF1,2:-0.299853668614;ALX1:-0.309329477384;FOXP3:-0.367737985791;ADNP_IRX_SIX_ZHX:-0.376172243352;NFKB1_REL_RELA:-0.387954264514;PAX6:-0.388308091027;BPTF:-0.399619212606;RUNX1..3:-0.405018466246;ZNF148:-0.422282042562;CREB1:-0.429216847163;PRRX1,2:-0.433788193708;RFX1:-0.434988237695;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.454107704763;SPI1:-0.465008929429;ELF1,2,4:-0.473928733456;NKX2-3_NKX2-5:-0.483218157946;TGIF1:-0.497388307806;NFY{A,B,C}:-0.515305565993;GCM1,2:-0.518707786078;DBP:-0.540114148038;RFX2..5_RFXANK_RFXAP:-0.542629869236;NR5A1,2:-0.547525297484;POU2F1..3:-0.54995339296;FOXQ1:-0.558743365102;PAX2:-0.584590499522;FOXN1:-0.589790687005;IRF7:-0.592887744622;BREu{core}:-0.597963124957;FOX{I1,J2}:-0.608830287324;ETS1,2:-0.609787692176;SPIB:-0.639170014988;FOXA2:-0.660096612771;FOX{D1,D2}:-0.691557747107;CRX:-0.695780818988;ATF4:-0.7012020837;ATF5_CREB3:-0.71346384402;SNAI1..3:-0.727007012538;SOX2:-0.809913127487;HOXA9_MEIS1:-0.82446550469;SOX{8,9,10}:-0.830517927491;ATF2:-0.871853995681;POU5F1:-0.895410736519;JUN:-0.929749313763;EP300:-0.941172474928;GATA6:-0.942196936968;VSX1,2:-0.942239994111;NFIL3:-0.959538528917;RBPJ:-0.960629713707;ZEB1:-1.01848395061;RORA:-1.0508248955;CUX2:-1.05676337897;NANOG:-1.27480735133;PBX1:-1.30298739436;OCT4_SOX2{dimer}:-1.31466183834;FOX{F1,F2,J1}:-1.80366916165 | |top_motifs=RXR{A,B,G}:1.79752764381;EVI1:1.60281327418;UFEwm:1.59232010503;NKX2-2,8:1.58204125151;ALX4:1.53731240859;FOXL1:1.52401380065;GZF1:1.47676653611;NKX3-1:1.18766749632;NR6A1:1.17292534758;AIRE:1.15680895362;HES1:1.14722308634;POU3F1..4:1.09176204567;T:1.06975224449;PAX1,9:1.04541572748;GATA4:1.01963273924;ZBTB16:0.922031036247;HOX{A4,D4}:0.891258944771;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.838943236422;EBF1:0.829856980168;ZNF238:0.829630401438;RXRA_VDR{dimer}:0.818854632636;TFCP2:0.789211936133;NR3C1:0.767601635243;KLF4:0.745675103315;TFAP4:0.724323225563;GFI1B:0.71948666495;TEAD1:0.717751962706;TLX1..3_NFIC{dimer}:0.695386796345;GTF2A1,2:0.684384751213;bHLH_family:0.653420740903;AR:0.622452983036;ESRRA:0.617618378581;ONECUT1,2:0.572717816761;ESR1:0.571824024854;SRF:0.568855792276;HMGA1,2:0.561723428242;ATF6:0.560830102536;EN1,2:0.559644220238;TBX4,5:0.559053790912;NANOG{mouse}:0.533120485612;IKZF1:0.520798491458;NFE2L1:0.49568684605;MAFB:0.486629786434;HMX1:0.484201857842;ARID5B:0.481269324467;TAL1_TCF{3,4,12}:0.47022078178;FOXD3:0.459551376609;GLI1..3:0.453675801355;HIF1A:0.449215264017;TOPORS:0.436693810399;YY1:0.413510210065;NKX2-1,4:0.408812363297;TFAP2{A,C}:0.389331938325;ZIC1..3:0.360311050122;MTF1:0.35609285074;ZNF384:0.344916030221;IKZF2:0.342598517126;MZF1:0.337690638325;MAZ:0.33337161282;LHX3,4:0.330562435412;HIC1:0.328045587251;NR1H4:0.324256600002;ZBTB6:0.322472294597;POU6F1:0.299763318043;FOXP1:0.275757607651;ELK1,4_GABP{A,B1}:0.271750088179;MYOD1:0.269619526721;SREBF1,2:0.268153295779;SMAD1..7,9:0.255945415219;NFATC1..3:0.242143991962;NRF1:0.236370428355;XCPE1{core}:0.227144355574;NHLH1,2:0.225344133707;SPZ1:0.222647262615;ZNF143:0.210429315602;XBP1:0.201188408879;GFI1:0.186883662126;PDX1:0.185554969138;RREB1:0.169680920914;TBP:0.155253969806;NKX6-1,2:0.153216536;REST:0.1516537524;EGR1..3:0.14318723442;MYBL2:0.142372310595;PAX5:0.138288806346;PATZ1:0.13418528526;HOX{A5,B5}:0.127058081733;GTF2I:0.12550845943;MED-1{core}:0.121274950849;HBP1_HMGB_SSRP1_UBTF:0.115021489409;ZNF423:0.110924220095;PRDM1:0.0880999120706;TP53:0.0847255994967;BACH2:0.0795304354162;PAX4:0.0722715263383;TFAP2B:0.0680185200583;FOXM1:0.0540632369719;MTE{core}:0.0411203635784;ZFP161:0.0309576250556;HNF1A:0.0247003917108;MYFfamily:0.0125185773475;LMO2:0.00458871368427;HSF1,2:-0.0107430825303;HOX{A6,A7,B6,B7}:-0.0218394058009;CDC5L:-0.0241992427063;NKX3-2:-0.029391517106;HAND1,2:-0.03189646725;HNF4A_NR2F1,2:-0.0485408912509;FOS_FOS{B,L1}_JUN{B,D}:-0.051930084228;NFIX:-0.0564031936839;STAT2,4,6:-0.0700333445159;NFE2L2:-0.0754861194807;PAX8:-0.0851465487191;DMAP1_NCOR{1,2}_SMARC:-0.0968002624348;SP1:-0.105552853778;HLF:-0.1121737895;STAT5{A,B}:-0.112196643447;PITX1..3:-0.121628875731;PPARG:-0.122472224251;E2F1..5:-0.136272974138;MEF2{A,B,C,D}:-0.141254822489;STAT1,3:-0.14648966098;TFDP1:-0.154121732783;POU1F1:-0.177740457729;SOX5:-0.194288816743;MYB:-0.20343982206;AHR_ARNT_ARNT2:-0.207859904857;FOXO1,3,4:-0.219519823546;CDX1,2,4:-0.230787088981;PAX3,7:-0.233001579135;TEF:-0.233500130032;CEBPA,B_DDIT3:-0.257922888242;LEF1_TCF7_TCF7L1,2:-0.271654423324;TLX2:-0.277872505581;SOX17:-0.279701477304;FOSL2:-0.280770611861;NFE2:-0.285622200268;IRF1,2:-0.299853668614;ALX1:-0.309329477384;FOXP3:-0.367737985791;ADNP_IRX_SIX_ZHX:-0.376172243352;NFKB1_REL_RELA:-0.387954264514;PAX6:-0.388308091027;BPTF:-0.399619212606;RUNX1..3:-0.405018466246;ZNF148:-0.422282042562;CREB1:-0.429216847163;PRRX1,2:-0.433788193708;RFX1:-0.434988237695;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.454107704763;SPI1:-0.465008929429;ELF1,2,4:-0.473928733456;NKX2-3_NKX2-5:-0.483218157946;TGIF1:-0.497388307806;NFY{A,B,C}:-0.515305565993;GCM1,2:-0.518707786078;DBP:-0.540114148038;RFX2..5_RFXANK_RFXAP:-0.542629869236;NR5A1,2:-0.547525297484;POU2F1..3:-0.54995339296;FOXQ1:-0.558743365102;PAX2:-0.584590499522;FOXN1:-0.589790687005;IRF7:-0.592887744622;BREu{core}:-0.597963124957;FOX{I1,J2}:-0.608830287324;ETS1,2:-0.609787692176;SPIB:-0.639170014988;FOXA2:-0.660096612771;FOX{D1,D2}:-0.691557747107;CRX:-0.695780818988;ATF4:-0.7012020837;ATF5_CREB3:-0.71346384402;SNAI1..3:-0.727007012538;SOX2:-0.809913127487;HOXA9_MEIS1:-0.82446550469;SOX{8,9,10}:-0.830517927491;ATF2:-0.871853995681;POU5F1:-0.895410736519;JUN:-0.929749313763;EP300:-0.941172474928;GATA6:-0.942196936968;VSX1,2:-0.942239994111;NFIL3:-0.959538528917;RBPJ:-0.960629713707;ZEB1:-1.01848395061;RORA:-1.0508248955;CUX2:-1.05676337897;NANOG:-1.27480735133;PBX1:-1.30298739436;OCT4_SOX2{dimer}:-1.31466183834;FOX{F1,F2,J1}:-1.80366916165 | ||
|xref= | |||
}} | }} | ||
Revision as of 15:27, 17 October 2017
| Name: | Myoblast, donor2 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11965 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4 |
| CAGEd-oPOSSUM: | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11965
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11965
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.699 |
| 10 | 10 | 0.0319 |
| 100 | 100 | 0.914 |
| 101 | 101 | 0.651 |
| 102 | 102 | 0.965 |
| 103 | 103 | 0.514 |
| 104 | 104 | 0.596 |
| 105 | 105 | 0.011 |
| 106 | 106 | 0.219 |
| 107 | 107 | 0.161 |
| 108 | 108 | 0.51 |
| 109 | 109 | 0.788 |
| 11 | 11 | 0.968 |
| 110 | 110 | 0.304 |
| 111 | 111 | 0.715 |
| 112 | 112 | 0.273 |
| 113 | 113 | 0.919 |
| 114 | 114 | 0.535 |
| 115 | 115 | 0.0693 |
| 116 | 116 | 0.0692 |
| 117 | 117 | 0.125 |
| 118 | 118 | 0.459 |
| 119 | 119 | 0.665 |
| 12 | 12 | 0.616 |
| 120 | 120 | 0.0785 |
| 121 | 121 | 0.809 |
| 122 | 122 | 0.0029 |
| 123 | 123 | 0.118 |
| 124 | 124 | 0.0327 |
| 125 | 125 | 0.97 |
| 126 | 126 | 0.96 |
| 127 | 127 | 0.8 |
| 128 | 128 | 0.956 |
| 129 | 129 | 0.383 |
| 13 | 13 | 0.834 |
| 130 | 130 | 0.81 |
| 131 | 131 | 0.627 |
| 132 | 132 | 0.532 |
| 133 | 133 | 0.817 |
| 134 | 134 | 0.831 |
| 135 | 135 | 0.613 |
| 136 | 136 | 0.0851 |
| 137 | 137 | 0.106 |
| 138 | 138 | 0.308 |
| 139 | 139 | 0.673 |
| 14 | 14 | 0.197 |
| 140 | 140 | 0.146 |
| 141 | 141 | 0.113 |
| 142 | 142 | 0.905 |
| 143 | 143 | 0.707 |
| 144 | 144 | 0.587 |
| 145 | 145 | 0.324 |
| 146 | 146 | 0.368 |
| 147 | 147 | 0.207 |
| 148 | 148 | 0.69 |
| 149 | 149 | 0.243 |
| 15 | 15 | 0.556 |
| 150 | 150 | 0.842 |
| 151 | 151 | 0.784 |
| 152 | 152 | 0.232 |
| 153 | 153 | 0.573 |
| 154 | 154 | 0.779 |
| 155 | 155 | 0.0449 |
| 156 | 156 | 0.41 |
| 157 | 157 | 0.289 |
| 158 | 158 | 0.00345 |
| 159 | 159 | 0.378 |
| 16 | 16 | 0.0576 |
| 160 | 160 | 0.683 |
| 161 | 161 | 0.482 |
| 162 | 162 | 0.185 |
| 163 | 163 | 0.962 |
| 164 | 164 | 0.44 |
| 165 | 165 | 0.413 |
| 166 | 166 | 0.193 |
| 167 | 167 | 0.983 |
| 168 | 168 | 0.859 |
| 169 | 169 | 0.17 |
| 17 | 17 | 0.749 |
| 18 | 18 | 0.995 |
| 19 | 19 | 0.024 |
| 2 | 2 | 0.844 |
| 20 | 20 | 0.86 |
| 21 | 21 | 0.0342 |
| 22 | 22 | 0.34 |
| 23 | 23 | 0.847 |
| 24 | 24 | 0.532 |
| 25 | 25 | 0.273 |
| 26 | 26 | 0.7 |
| 27 | 27 | 0.888 |
| 28 | 28 | 0.283 |
| 29 | 29 | 0.51 |
| 3 | 3 | 0.527 |
| 30 | 30 | 0.533 |
| 31 | 31 | 0.753 |
| 32 | 32 | 2.65898e-8 |
| 33 | 33 | 0.96 |
| 34 | 34 | 0.279 |
| 35 | 35 | 0.957 |
| 36 | 36 | 0.0185 |
| 37 | 37 | 0.072 |
| 38 | 38 | 0.557 |
| 39 | 39 | 0.219 |
| 4 | 4 | 0.0427 |
| 40 | 40 | 0.0326 |
| 41 | 41 | 0.157 |
| 42 | 42 | 0.316 |
| 43 | 43 | 0.713 |
| 44 | 44 | 0.205 |
| 45 | 45 | 0.463 |
| 46 | 46 | 0.57 |
| 47 | 47 | 0.491 |
| 48 | 48 | 0.705 |
| 49 | 49 | 0.281 |
| 5 | 5 | 0.496 |
| 50 | 50 | 0.428 |
| 51 | 51 | 0.751 |
| 52 | 52 | 0.324 |
| 53 | 53 | 0.0631 |
| 54 | 54 | 0.984 |
| 55 | 55 | 0.122 |
| 56 | 56 | 0.905 |
| 57 | 57 | 0.929 |
| 58 | 58 | 0.227 |
| 59 | 59 | 0.285 |
| 6 | 6 | 0.265 |
| 60 | 60 | 0.128 |
| 61 | 61 | 0.428 |
| 62 | 62 | 0.687 |
| 63 | 63 | 0.189 |
| 64 | 64 | 0.296 |
| 65 | 65 | 0.961 |
| 66 | 66 | 0.203 |
| 67 | 67 | 0.924 |
| 68 | 68 | 0.307 |
| 69 | 69 | 0.721 |
| 7 | 7 | 0.305 |
| 70 | 70 | 0.518 |
| 71 | 71 | 0.411 |
| 72 | 72 | 0.259 |
| 73 | 73 | 0.00846 |
| 74 | 74 | 0.214 |
| 75 | 75 | 0.504 |
| 76 | 76 | 0.412 |
| 77 | 77 | 0.0835 |
| 78 | 78 | 0.907 |
| 79 | 79 | 0.0733 |
| 8 | 8 | 0.249 |
| 80 | 80 | 0.0145 |
| 81 | 81 | 0.645 |
| 82 | 82 | 0.832 |
| 83 | 83 | 0.585 |
| 84 | 84 | 0.643 |
| 85 | 85 | 0.513 |
| 86 | 86 | 0.243 |
| 87 | 87 | 0.0756 |
| 88 | 88 | 0.961 |
| 89 | 89 | 0.871 |
| 9 | 9 | 0.936 |
| 90 | 90 | 0.482 |
| 91 | 91 | 0.601 |
| 92 | 92 | 0.675 |
| 93 | 93 | 0.671 |
| 94 | 94 | 0.985 |
| 95 | 95 | 0.942 |
| 96 | 96 | 0.447 |
| 97 | 97 | 0.965 |
| 98 | 98 | 0.166 |
| 99 | 99 | 0.00574 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11965
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000055 (non-terminally differentiated cell)
0000003 (native cell)
0000548 (animal cell)
0000680 (muscle precursor cell)
0002321 (embryonic cell)
0002371 (somatic cell)
0000056 (myoblast)
0000255 (eukaryotic cell)
0000515 (skeletal muscle myoblast)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000164 (human skeletal muscle myoblast sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000515 (skeletal muscle myoblast)
