FF:11413-118E9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005046 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005046 | ||
|accession_numbers=CAGE;DRX008222;DRR009094;DRZ000519;DRZ001904;DRZ011869;DRZ013254 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037050;DRR041416;DRZ007058 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0003509,UBERON:0004638,UBERON:0003915,UBERON:0004700,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0001917,UBERON:0004535,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:1000413 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000046,FF:0000047,FF:0000001 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor3.CNhs12023.11413-118E9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor3.CNhs12023.11413-118E9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor3.CNhs12023.11413-118E9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor3.CNhs12023.11413-118E9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor3.CNhs12023.11413-118E9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11413-118E9 | |id=FF:11413-118E9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000047 | ||
|is_obsolete= | |||
|library_id=CNhs12023 | |||
|library_id_phase_based=2:CNhs12023 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11413 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.GTGGCC.11413 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11413 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.GTGGCC.11413 | |||
|name=Endothelial Cells - Artery, donor3 | |name=Endothelial Cells - Artery, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12023,LSID837,release011,COMPLETED | |profile_hcage=CNhs12023,LSID837,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10004,,, | |profile_srnaseq=SRhi10004,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0412122463733808,0,0,0,0,-0.160318030086386,0,0.232448040582164,0.213207400934485,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110544903951928,0,0,0,0.348217703888952,0,-0.0979578962680575,0,0,0.0784269323981336,0,0,0,0,0,0,0,0,0,0,0,0,0.276553349417612,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0.0824244927467616,0.0546807863702427,0,0,0.0543295203997508,0,0,0,0,0,0,0,0,0.0824244927467616,0,0,0,0,0,0,0,0,-0.0908278876222673,0,0,0,0,0,0,0.269524501903377,0,0,0,0.225406560532847,0.213231213970043,0,0,0,0,-0.0156108584909448,0.0927033567826618,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00931816716603695,0,0,0,0.245300730270315,0.436783083749087,0,0,0,0,0,0 | |||
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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=CA300-R10a | |rna_catalog_number=CA300-R10a | ||
| Line 54: | Line 80: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.18E+11 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10004.GTGGCC | |||
|sample_age=53 | |sample_age=53 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.86431139721933e-249!GO:0043226;organelle;1.89220306647816e-198!GO:0043229;intracellular organelle;3.5239281357224e-198!GO:0005737;cytoplasm;2.10638076752237e-194!GO:0043231;intracellular membrane-bound organelle;3.64360354238479e-192!GO:0043227;membrane-bound organelle;8.64725947636511e-192!GO:0044422;organelle part;5.76588099671239e-149!GO:0044446;intracellular organelle part;1.33067412046097e-147!GO:0044444;cytoplasmic part;1.12759465041465e-137!GO:0032991;macromolecular complex;5.81392335060663e-100!GO:0044238;primary metabolic process;8.08412556103363e-91!GO:0044237;cellular metabolic process;2.43858249162294e-90!GO:0030529;ribonucleoprotein complex;9.1703962232307e-89!GO:0005515;protein binding;1.15583788726858e-85!GO:0043170;macromolecule metabolic process;7.34823012170241e-84!GO:0005634;nucleus;2.16026130343019e-77!GO:0043233;organelle lumen;4.49644696789991e-75!GO:0031974;membrane-enclosed lumen;4.49644696789991e-75!GO:0044428;nuclear part;2.54504023952082e-73!GO:0003723;RNA binding;5.59086360551178e-72!GO:0005739;mitochondrion;7.8865883750854e-71!GO:0019538;protein metabolic process;1.98322384157749e-56!GO:0005840;ribosome;3.01813414705165e-55!GO:0006412;translation;2.73952963504507e-53!GO:0031090;organelle membrane;1.14121361274407e-52!GO:0016043;cellular component organization and biogenesis;1.04125348133972e-51!GO:0043234;protein complex;6.04758549100693e-50!GO:0044267;cellular protein metabolic process;2.33704496053598e-49!GO:0044260;cellular macromolecule metabolic process;2.9114669048823e-49!GO:0003735;structural constituent of ribosome;1.03505506609626e-48!GO:0044429;mitochondrial part;3.86207261327609e-48!GO:0006396;RNA processing;4.17821759900134e-47!GO:0043283;biopolymer metabolic process;6.75674620863678e-46!GO:0031981;nuclear lumen;9.93147864782553e-46!GO:0031967;organelle envelope;7.03306669351658e-45!GO:0031975;envelope;1.82855486032531e-44!GO:0005829;cytosol;7.97481451161733e-43!GO:0015031;protein transport;2.03336029123794e-42!GO:0033036;macromolecule localization;2.51555684908677e-41!GO:0033279;ribosomal subunit;3.04617865421996e-41!GO:0009058;biosynthetic process;9.61376042997063e-41!GO:0044249;cellular biosynthetic process;1.06737315207654e-40!GO:0009059;macromolecule biosynthetic process;2.26911114382371e-40!GO:0043228;non-membrane-bound organelle;1.59889905041063e-39!GO:0043232;intracellular non-membrane-bound organelle;1.59889905041063e-39!GO:0010467;gene expression;2.74103240836712e-39!GO:0045184;establishment of protein localization;1.54106101925452e-38!GO:0008104;protein localization;2.6652356251539e-38!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.55390512683784e-38!GO:0006996;organelle organization and biogenesis;4.63281248389449e-37!GO:0046907;intracellular transport;1.98030916498439e-35!GO:0016071;mRNA metabolic process;1.48003872274517e-34!GO:0065003;macromolecular complex assembly;2.58528829945415e-34!GO:0008380;RNA splicing;1.81390075644515e-32!GO:0005740;mitochondrial envelope;1.88382604866563e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.14287765583295e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.47283590823743e-31!GO:0031966;mitochondrial membrane;1.13193851982013e-30!GO:0022607;cellular component assembly;2.1956754974851e-30!GO:0006886;intracellular protein transport;5.54368669960659e-30!GO:0006397;mRNA processing;9.05512513555222e-30!GO:0019866;organelle inner membrane;3.82298237260084e-28!GO:0006259;DNA metabolic process;3.96686817000745e-28!GO:0000166;nucleotide binding;1.35351638238658e-27!GO:0005654;nucleoplasm;1.3609010681733e-26!GO:0005743;mitochondrial inner membrane;3.77092486393083e-26!GO:0007049;cell cycle;2.24978809881664e-25!GO:0044445;cytosolic part;5.90775707387663e-25!GO:0005681;spliceosome;1.60728811582343e-24!GO:0051649;establishment of cellular localization;1.03635710688096e-23!GO:0051641;cellular localization;2.417932005871e-23!GO:0016462;pyrophosphatase activity;4.1049944958441e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.89491181859223e-22!GO:0006119;oxidative phosphorylation;5.01002140244383e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;6.28482985222696e-22!GO:0017111;nucleoside-triphosphatase activity;1.62156053896875e-21!GO:0005730;nucleolus;2.00085285718541e-21!GO:0015934;large ribosomal subunit;2.32083735585306e-21!GO:0044451;nucleoplasm part;3.14568396862397e-21!GO:0012505;endomembrane system;4.09156407540416e-21!GO:0015935;small ribosomal subunit;5.54502490769677e-21!GO:0044455;mitochondrial membrane part;2.04726054583617e-20!GO:0003676;nucleic acid binding;2.22042534579239e-20!GO:0032553;ribonucleotide binding;3.55656330907499e-20!GO:0032555;purine ribonucleotide binding;3.55656330907499e-20!GO:0017076;purine nucleotide binding;5.10544162618135e-20!GO:0031980;mitochondrial lumen;9.10551543852495e-20!GO:0005759;mitochondrial matrix;9.10551543852495e-20!GO:0022402;cell cycle process;1.34057936703472e-19!GO:0016874;ligase activity;4.09484264446084e-19!GO:0006457;protein folding;1.1264033293905e-18!GO:0008134;transcription factor binding;9.35766373739431e-18!GO:0000278;mitotic cell cycle;1.41515948971483e-17!GO:0005746;mitochondrial respiratory chain;2.41669082474159e-17!GO:0005783;endoplasmic reticulum;2.48908878042459e-17!GO:0022618;protein-RNA complex assembly;3.95047135185894e-17!GO:0006512;ubiquitin cycle;8.08923129333184e-17!GO:0044265;cellular macromolecule catabolic process;1.53415958647465e-16!GO:0043412;biopolymer modification;1.65644954801944e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.72424280078172e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.9240141950606e-16!GO:0005794;Golgi apparatus;3.01975534880862e-16!GO:0005524;ATP binding;3.42422239168251e-16!GO:0032559;adenyl ribonucleotide binding;3.69768136204797e-16!GO:0048770;pigment granule;6.01331140386545e-16!GO:0042470;melanosome;6.01331140386545e-16!GO:0006605;protein targeting;6.4927088931372e-16!GO:0030554;adenyl nucleotide binding;7.37406768947742e-16!GO:0043285;biopolymer catabolic process;1.06382299919308e-15!GO:0042254;ribosome biogenesis and assembly;1.79498538538808e-15!GO:0051186;cofactor metabolic process;2.14392057981262e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.33825851041352e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;3.25587238108366e-15!GO:0009057;macromolecule catabolic process;4.28525381528234e-15!GO:0019941;modification-dependent protein catabolic process;4.28525381528234e-15!GO:0043632;modification-dependent macromolecule catabolic process;4.28525381528234e-15!GO:0006464;protein modification process;5.74015767045066e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.74015767045066e-15!GO:0050136;NADH dehydrogenase (quinone) activity;7.07790719091953e-15!GO:0003954;NADH dehydrogenase activity;7.07790719091953e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.07790719091953e-15!GO:0044257;cellular protein catabolic process;7.24258517368226e-15!GO:0006511;ubiquitin-dependent protein catabolic process;7.2438199035594e-15!GO:0016070;RNA metabolic process;8.10873242036308e-15!GO:0016192;vesicle-mediated transport;1.91573513697636e-14!GO:0005761;mitochondrial ribosome;1.91689431002815e-14!GO:0000313;organellar ribosome;1.91689431002815e-14!GO:0006974;response to DNA damage stimulus;1.93128803265849e-14!GO:0044432;endoplasmic reticulum part;3.0308709653211e-14!GO:0008135;translation factor activity, nucleic acid binding;5.50079257711539e-14!GO:0005694;chromosome;6.46729320470694e-14!GO:0044248;cellular catabolic process;7.70441455403415e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;1.39068905046702e-13!GO:0000375;RNA splicing, via transesterification reactions;1.39068905046702e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.39068905046702e-13!GO:0030163;protein catabolic process;1.69331287568522e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.76794475940665e-13!GO:0005635;nuclear envelope;2.90499999720964e-13!GO:0042775;organelle ATP synthesis coupled electron transport;3.96062832686285e-13!GO:0042773;ATP synthesis coupled electron transport;3.96062832686285e-13!GO:0044427;chromosomal part;4.10878597067669e-13!GO:0051082;unfolded protein binding;4.3047496815129e-13!GO:0051276;chromosome organization and biogenesis;5.08664491436934e-13!GO:0030964;NADH dehydrogenase complex (quinone);5.21738348619347e-13!GO:0045271;respiratory chain complex I;5.21738348619347e-13!GO:0005747;mitochondrial respiratory chain complex I;5.21738348619347e-13!GO:0043687;post-translational protein modification;9.93290373832964e-13!GO:0048193;Golgi vesicle transport;1.00401393890786e-12!GO:0031965;nuclear membrane;1.2143704758696e-12!GO:0022403;cell cycle phase;1.35344567466626e-12!GO:0000087;M phase of mitotic cell cycle;1.60488416851861e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.68764975592173e-12!GO:0007067;mitosis;2.01267121544795e-12!GO:0044453;nuclear membrane part;2.06678980172723e-12!GO:0042623;ATPase activity, coupled;3.51415345280798e-12!GO:0003712;transcription cofactor activity;3.56830574455861e-12!GO:0051726;regulation of cell cycle;6.8265717516364e-12!GO:0051301;cell division;6.9969368622565e-12!GO:0016887;ATPase activity;7.65847185290413e-12!GO:0012501;programmed cell death;8.87972588506973e-12!GO:0006732;coenzyme metabolic process;9.58393663537122e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;9.84524315679232e-12!GO:0006260;DNA replication;1.00842351822408e-11!GO:0006915;apoptosis;1.02065057336892e-11!GO:0000074;regulation of progression through cell cycle;1.03360034071228e-11!GO:0003743;translation initiation factor activity;1.06012993483059e-11!GO:0006913;nucleocytoplasmic transport;1.58342203831342e-11!GO:0006281;DNA repair;2.30732379477092e-11!GO:0009055;electron carrier activity;2.70851794303697e-11!GO:0006323;DNA packaging;4.32677234539084e-11!GO:0051169;nuclear transport;4.60335042735741e-11!GO:0016604;nuclear body;4.93345236338005e-11!GO:0006461;protein complex assembly;7.95803567977375e-11!GO:0006413;translational initiation;8.74189426420447e-11!GO:0006399;tRNA metabolic process;9.56860689205932e-11!GO:0009719;response to endogenous stimulus;9.60801502165177e-11!GO:0009259;ribonucleotide metabolic process;1.16714439018208e-10!GO:0005793;ER-Golgi intermediate compartment;1.47785524208521e-10!GO:0006364;rRNA processing;1.58952644202032e-10!GO:0006163;purine nucleotide metabolic process;1.83391491430588e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.59748488805234e-10!GO:0008219;cell death;2.65121232758303e-10!GO:0016265;death;2.65121232758303e-10!GO:0008639;small protein conjugating enzyme activity;3.37800586149343e-10!GO:0016072;rRNA metabolic process;4.60373219742288e-10!GO:0005643;nuclear pore;4.84515587745349e-10!GO:0009150;purine ribonucleotide metabolic process;5.72786000106553e-10!GO:0004842;ubiquitin-protein ligase activity;6.62738779632595e-10!GO:0005789;endoplasmic reticulum membrane;7.39415188760418e-10!GO:0008565;protein transporter activity;9.32966683211382e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.04989092367051e-09!GO:0050794;regulation of cellular process;1.18992244182855e-09!GO:0000785;chromatin;1.19622764283559e-09!GO:0048523;negative regulation of cellular process;1.23769682455378e-09!GO:0000279;M phase;1.55808464559681e-09!GO:0019787;small conjugating protein ligase activity;1.81496750155163e-09!GO:0004386;helicase activity;1.83071227871963e-09!GO:0006446;regulation of translational initiation;1.86777416272682e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.97358994864481e-09!GO:0006164;purine nucleotide biosynthetic process;2.01594551598384e-09!GO:0017038;protein import;2.79428685385783e-09!GO:0065002;intracellular protein transport across a membrane;2.79443870701783e-09!GO:0009260;ribonucleotide biosynthetic process;3.31865791508303e-09!GO:0008026;ATP-dependent helicase activity;4.1276973430511e-09!GO:0065004;protein-DNA complex assembly;4.33560428423618e-09!GO:0006333;chromatin assembly or disassembly;4.66989088011466e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.86565173957558e-09!GO:0009152;purine ribonucleotide biosynthetic process;6.13703480928003e-09!GO:0046930;pore complex;8.69800979187893e-09!GO:0009199;ribonucleoside triphosphate metabolic process;9.37399001802659e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.22382582924304e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.22382582924304e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.22382582924304e-08!GO:0006366;transcription from RNA polymerase II promoter;1.35696411015962e-08!GO:0009141;nucleoside triphosphate metabolic process;1.35918380294791e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.65444826548895e-08!GO:0016881;acid-amino acid ligase activity;1.67905968411283e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.91458886004103e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.91458886004103e-08!GO:0009060;aerobic respiration;2.04945077733232e-08!GO:0006793;phosphorus metabolic process;2.27695913510054e-08!GO:0006796;phosphate metabolic process;2.27695913510054e-08!GO:0009056;catabolic process;2.5596101783819e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.73912614242159e-08!GO:0016607;nuclear speck;2.78986415516885e-08!GO:0015986;ATP synthesis coupled proton transport;2.90215144963947e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.90215144963947e-08!GO:0051188;cofactor biosynthetic process;3.01850333158419e-08!GO:0043038;amino acid activation;3.56435348484461e-08!GO:0006418;tRNA aminoacylation for protein translation;3.56435348484461e-08!GO:0043039;tRNA aminoacylation;3.56435348484461e-08!GO:0048519;negative regulation of biological process;4.45397549106322e-08!GO:0009142;nucleoside triphosphate biosynthetic process;6.81870847443188e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.81870847443188e-08!GO:0051246;regulation of protein metabolic process;7.03076810517673e-08!GO:0006334;nucleosome assembly;7.09984090795074e-08!GO:0046034;ATP metabolic process;7.3773117390325e-08!GO:0050657;nucleic acid transport;8.86192114866254e-08!GO:0051236;establishment of RNA localization;8.86192114866254e-08!GO:0050658;RNA transport;8.86192114866254e-08!GO:0006403;RNA localization;8.86192114866254e-08!GO:0016779;nucleotidyltransferase activity;9.16407262042292e-08!GO:0045333;cellular respiration;1.05248656806777e-07!GO:0016740;transferase activity;1.08019420489268e-07!GO:0016310;phosphorylation;1.23130282184179e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.39833682553552e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.39833682553552e-07!GO:0003924;GTPase activity;1.86755208137401e-07!GO:0042981;regulation of apoptosis;1.98717853308016e-07!GO:0015630;microtubule cytoskeleton;1.9901490867826e-07!GO:0043067;regulation of programmed cell death;2.40328246599075e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.48373997161366e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.61747674718332e-07!GO:0019829;cation-transporting ATPase activity;2.67420674081222e-07!GO:0031497;chromatin assembly;2.87293914317029e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.98793329785651e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.08768271285198e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.39479844011938e-07!GO:0044431;Golgi apparatus part;3.7768393877309e-07!GO:0006754;ATP biosynthetic process;4.74175548228881e-07!GO:0006753;nucleoside phosphate metabolic process;4.74175548228881e-07!GO:0016023;cytoplasmic membrane-bound vesicle;4.85224005445467e-07!GO:0009117;nucleotide metabolic process;5.21299554079454e-07!GO:0003697;single-stranded DNA binding;5.23865274770435e-07!GO:0005525;GTP binding;5.53725432132705e-07!GO:0031988;membrane-bound vesicle;6.80693429388716e-07!GO:0007005;mitochondrion organization and biogenesis;7.25257779202633e-07!GO:0015078;hydrogen ion transmembrane transporter activity;8.5832172675474e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.71900326104913e-07!GO:0030120;vesicle coat;9.51656463235174e-07!GO:0030662;coated vesicle membrane;9.51656463235174e-07!GO:0005768;endosome;1.01621606958657e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.22433823286371e-06!GO:0048475;coated membrane;1.24840884966959e-06!GO:0030117;membrane coat;1.24840884966959e-06!GO:0006099;tricarboxylic acid cycle;1.26209772522459e-06!GO:0046356;acetyl-CoA catabolic process;1.26209772522459e-06!GO:0051170;nuclear import;1.28789267279408e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.30316762901361e-06!GO:0005788;endoplasmic reticulum lumen;1.36216760132907e-06!GO:0016567;protein ubiquitination;1.36843213069937e-06!GO:0031252;leading edge;1.38239321494333e-06!GO:0032446;protein modification by small protein conjugation;1.38780681707947e-06!GO:0045786;negative regulation of progression through cell cycle;1.66562466487273e-06!GO:0009108;coenzyme biosynthetic process;1.827789818022e-06!GO:0006916;anti-apoptosis;2.33236948804714e-06!GO:0045259;proton-transporting ATP synthase complex;2.47927175142639e-06!GO:0016787;hydrolase activity;2.47978245693343e-06!GO:0050789;regulation of biological process;2.72592873011195e-06!GO:0019899;enzyme binding;2.82736464326776e-06!GO:0016564;transcription repressor activity;2.92633629035337e-06!GO:0030036;actin cytoskeleton organization and biogenesis;2.97589655840157e-06!GO:0031968;organelle outer membrane;3.22542720139401e-06!GO:0006606;protein import into nucleus;3.23920738000244e-06!GO:0006084;acetyl-CoA metabolic process;3.23920738000244e-06!GO:0016491;oxidoreductase activity;3.28797436689872e-06!GO:0003899;DNA-directed RNA polymerase activity;3.28807299131412e-06!GO:0031410;cytoplasmic vesicle;3.28963206047914e-06!GO:0051028;mRNA transport;3.48183690899716e-06!GO:0031982;vesicle;3.51651673398395e-06!GO:0003724;RNA helicase activity;4.08205777010147e-06!GO:0003714;transcription corepressor activity;4.14846761209234e-06!GO:0003713;transcription coactivator activity;4.20397985653288e-06!GO:0000245;spliceosome assembly;4.45073768616578e-06!GO:0043566;structure-specific DNA binding;4.4835017563063e-06!GO:0007010;cytoskeleton organization and biogenesis;4.61577812947106e-06!GO:0051187;cofactor catabolic process;4.61577812947106e-06!GO:0016469;proton-transporting two-sector ATPase complex;4.61577812947106e-06!GO:0016568;chromatin modification;4.81736186012052e-06!GO:0043069;negative regulation of programmed cell death;4.87277388076134e-06!GO:0019867;outer membrane;5.09023667879657e-06!GO:0005667;transcription factor complex;5.27222817399324e-06!GO:0006752;group transfer coenzyme metabolic process;6.2518998719145e-06!GO:0043066;negative regulation of apoptosis;6.99812777229076e-06!GO:0044440;endosomal part;7.9479250005262e-06!GO:0010008;endosome membrane;7.9479250005262e-06!GO:0032561;guanyl ribonucleotide binding;8.31430626311869e-06!GO:0019001;guanyl nucleotide binding;8.31430626311869e-06!GO:0004298;threonine endopeptidase activity;8.44402347907532e-06!GO:0000151;ubiquitin ligase complex;8.5790268527601e-06!GO:0051329;interphase of mitotic cell cycle;8.9773866300174e-06!GO:0005762;mitochondrial large ribosomal subunit;9.33426274097827e-06!GO:0000315;organellar large ribosomal subunit;9.33426274097827e-06!GO:0043623;cellular protein complex assembly;9.52550358776174e-06!GO:0000139;Golgi membrane;9.56347509326783e-06!GO:0051325;interphase;1.03930979467101e-05!GO:0005741;mitochondrial outer membrane;1.13038670184392e-05!GO:0009109;coenzyme catabolic process;1.36089907294691e-05!GO:0005770;late endosome;1.74550230937927e-05!GO:0005819;spindle;1.77257049687807e-05!GO:0016563;transcription activator activity;1.98927955753047e-05!GO:0030029;actin filament-based process;2.09479482747105e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.14990763250123e-05!GO:0016853;isomerase activity;2.27835399565197e-05!GO:0005813;centrosome;3.0234668723124e-05!GO:0005769;early endosome;3.16025622257718e-05!GO:0019843;rRNA binding;3.37191910391961e-05!GO:0005773;vacuole;3.99052797234434e-05!GO:0030867;rough endoplasmic reticulum membrane;4.11495263685855e-05!GO:0006091;generation of precursor metabolites and energy;4.26221406198798e-05!GO:0006613;cotranslational protein targeting to membrane;4.44649363748136e-05!GO:0048522;positive regulation of cellular process;4.95934868577657e-05!GO:0045454;cell redox homeostasis;5.05690319011998e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.44025977578086e-05!GO:0008047;enzyme activator activity;5.87908993088998e-05!GO:0008186;RNA-dependent ATPase activity;6.81082661157289e-05!GO:0007264;small GTPase mediated signal transduction;7.53312560128781e-05!GO:0008092;cytoskeletal protein binding;7.8929682209193e-05!GO:0005815;microtubule organizing center;8.90407079253896e-05!GO:0007243;protein kinase cascade;9.34970962990151e-05!GO:0051427;hormone receptor binding;9.55717039362139e-05!GO:0016044;membrane organization and biogenesis;9.77065743345738e-05!GO:0031324;negative regulation of cellular metabolic process;0.000104099136553503!GO:0000786;nucleosome;0.000109221275529424!GO:0005798;Golgi-associated vesicle;0.000130198703583053!GO:0033116;ER-Golgi intermediate compartment membrane;0.000135771637883916!GO:0005048;signal sequence binding;0.000142855613221915!GO:0065009;regulation of a molecular function;0.000163398381870585!GO:0051087;chaperone binding;0.000175528741726409!GO:0005905;coated pit;0.000183483405029432!GO:0030880;RNA polymerase complex;0.000187412731970563!GO:0004004;ATP-dependent RNA helicase activity;0.00019469238363184!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000201033638850071!GO:0035257;nuclear hormone receptor binding;0.000202268212453876!GO:0044452;nucleolar part;0.0002241549826039!GO:0000323;lytic vacuole;0.000229874650117111!GO:0005764;lysosome;0.000229874650117111!GO:0043681;protein import into mitochondrion;0.000253310866105081!GO:0043021;ribonucleoprotein binding;0.000259688049576544!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000274488032652612!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000281384189485869!GO:0009892;negative regulation of metabolic process;0.000283761523394732!GO:0006261;DNA-dependent DNA replication;0.000290254072566286!GO:0005096;GTPase activator activity;0.000316359080002825!GO:0005885;Arp2/3 protein complex;0.000316359080002825!GO:0016859;cis-trans isomerase activity;0.000323090964681641!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000330302945116867!GO:0008654;phospholipid biosynthetic process;0.000330868924680935!GO:0042802;identical protein binding;0.000389571259837772!GO:0000314;organellar small ribosomal subunit;0.000399022620430184!GO:0005763;mitochondrial small ribosomal subunit;0.000399022620430184!GO:0048471;perinuclear region of cytoplasm;0.000400693757062969!GO:0015980;energy derivation by oxidation of organic compounds;0.000400693757062969!GO:0009165;nucleotide biosynthetic process;0.000400693757062969!GO:0051168;nuclear export;0.000414974567826316!GO:0000059;protein import into nucleus, docking;0.000426215533795849!GO:0008033;tRNA processing;0.000448821606703505!GO:0007051;spindle organization and biogenesis;0.000454177568681261!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000455186083641953!GO:0000428;DNA-directed RNA polymerase complex;0.000455186083641953!GO:0006414;translational elongation;0.000470649430125009!GO:0008094;DNA-dependent ATPase activity;0.000488371764773451!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000546129761393371!GO:0015399;primary active transmembrane transporter activity;0.000546129761393371!GO:0006626;protein targeting to mitochondrion;0.000549443039745065!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000561572092564855!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000660407066393705!GO:0007006;mitochondrial membrane organization and biogenesis;0.000717651554670456!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000717651554670456!GO:0008632;apoptotic program;0.000758038064733126!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000777108483966778!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000823225914450887!GO:0006612;protein targeting to membrane;0.000882908490090203!GO:0065007;biological regulation;0.00090172466305975!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000916162700994016!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000938089989778706!GO:0000775;chromosome, pericentric region;0.000945659453854602!GO:0000075;cell cycle checkpoint;0.00109331581135515!GO:0005657;replication fork;0.0011334848875701!GO:0051920;peroxiredoxin activity;0.00114719488209086!GO:0003684;damaged DNA binding;0.00139192296265116!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00166110331041212!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00166110331041212!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00166110331041212!GO:0051789;response to protein stimulus;0.00177300354155843!GO:0006986;response to unfolded protein;0.00177300354155843!GO:0019222;regulation of metabolic process;0.00182019194668704!GO:0016363;nuclear matrix;0.0019618437652437!GO:0007265;Ras protein signal transduction;0.00199185009221018!GO:0005874;microtubule;0.00202406483861816!GO:0048487;beta-tubulin binding;0.00207587377072213!GO:0051252;regulation of RNA metabolic process;0.00214079608666448!GO:0031072;heat shock protein binding;0.00229217384586805!GO:0008250;oligosaccharyl transferase complex;0.0023288743528893!GO:0051540;metal cluster binding;0.0023288743528893!GO:0051536;iron-sulfur cluster binding;0.0023288743528893!GO:0005791;rough endoplasmic reticulum;0.00238645112944297!GO:0030659;cytoplasmic vesicle membrane;0.00244989027540332!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00251520025585697!GO:0044262;cellular carbohydrate metabolic process;0.00251876450297859!GO:0008139;nuclear localization sequence binding;0.00255569482493179!GO:0005684;U2-dependent spliceosome;0.00259123366841512!GO:0006401;RNA catabolic process;0.00286184671929955!GO:0000082;G1/S transition of mitotic cell cycle;0.00292928950670284!GO:0006839;mitochondrial transport;0.00297550240676942!GO:0017166;vinculin binding;0.0030174926506232!GO:0030027;lamellipodium;0.00305033634795054!GO:0006383;transcription from RNA polymerase III promoter;0.00311255677560405!GO:0030663;COPI coated vesicle membrane;0.00314714772815884!GO:0030126;COPI vesicle coat;0.00314714772815884!GO:0043492;ATPase activity, coupled to movement of substances;0.00321090684731191!GO:0008361;regulation of cell size;0.0032438248818713!GO:0004576;oligosaccharyl transferase activity;0.00331621613199686!GO:0003729;mRNA binding;0.00333812507133916!GO:0003682;chromatin binding;0.00340887967265146!GO:0016481;negative regulation of transcription;0.0035893520274413!GO:0030695;GTPase regulator activity;0.00367509254234494!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00379095042648414!GO:0006402;mRNA catabolic process;0.0038879738433393!GO:0006950;response to stress;0.00401277994471684!GO:0032508;DNA duplex unwinding;0.00406836684015963!GO:0032392;DNA geometric change;0.00406836684015963!GO:0016049;cell growth;0.00411672862795495!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00412637120801511!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0041761576380946!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0041761576380946!GO:0006289;nucleotide-excision repair;0.00430356360219479!GO:0015992;proton transport;0.00430976318323646!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0044812723266582!GO:0003678;DNA helicase activity;0.00448582881445049!GO:0001558;regulation of cell growth;0.00452370847165645!GO:0030132;clathrin coat of coated pit;0.00452370847165645!GO:0006818;hydrogen transport;0.00453100404885015!GO:0015631;tubulin binding;0.00464266211213872!GO:0044433;cytoplasmic vesicle part;0.00465068098460874!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00490096692038767!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00497606408621877!GO:0030133;transport vesicle;0.00501020106784307!GO:0018196;peptidyl-asparagine modification;0.00507219067808058!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00507219067808058!GO:0030134;ER to Golgi transport vesicle;0.00509134868106551!GO:0016197;endosome transport;0.00518374213573281!GO:0046483;heterocycle metabolic process;0.0052127397349393!GO:0051539;4 iron, 4 sulfur cluster binding;0.00534153044493722!GO:0043488;regulation of mRNA stability;0.0053849446132295!GO:0043487;regulation of RNA stability;0.0053849446132295!GO:0030658;transport vesicle membrane;0.00551363149625104!GO:0050790;regulation of catalytic activity;0.00551665930758381!GO:0045941;positive regulation of transcription;0.00558708080185591!GO:0006509;membrane protein ectodomain proteolysis;0.00574071379318277!GO:0033619;membrane protein proteolysis;0.00574071379318277!GO:0000049;tRNA binding;0.00584489739509818!GO:0048500;signal recognition particle;0.00593790837088955!GO:0030137;COPI-coated vesicle;0.00605171973430452!GO:0005637;nuclear inner membrane;0.00606078016930882!GO:0031902;late endosome membrane;0.00609269064737513!GO:0008180;signalosome;0.00631358140460418!GO:0043284;biopolymer biosynthetic process;0.00633592881439574!GO:0004674;protein serine/threonine kinase activity;0.00635427446405753!GO:0030127;COPII vesicle coat;0.00665011781582761!GO:0012507;ER to Golgi transport vesicle membrane;0.00665011781582761!GO:0006595;polyamine metabolic process;0.00671108554303797!GO:0006897;endocytosis;0.00685313435645133!GO:0010324;membrane invagination;0.00685313435645133!GO:0007242;intracellular signaling cascade;0.00687349228429706!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00687692768053116!GO:0050662;coenzyme binding;0.00697130784142378!GO:0016126;sterol biosynthetic process;0.00718332790169342!GO:0003779;actin binding;0.00731352487586209!GO:0005083;small GTPase regulator activity;0.00749608564207298!GO:0048518;positive regulation of biological process;0.00756952088720527!GO:0006891;intra-Golgi vesicle-mediated transport;0.007648902849643!GO:0006268;DNA unwinding during replication;0.00767534233993646!GO:0033673;negative regulation of kinase activity;0.00769718157572659!GO:0006469;negative regulation of protein kinase activity;0.00769718157572659!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00776389471444603!GO:0030118;clathrin coat;0.00792615397769342!GO:0005774;vacuolar membrane;0.00810128402762844!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00821053736036239!GO:0045045;secretory pathway;0.00822570598131837!GO:0006405;RNA export from nucleus;0.00826298958565068!GO:0007050;cell cycle arrest;0.00839971906331608!GO:0046474;glycerophospholipid biosynthetic process;0.00847818439618772!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00851376496453462!GO:0004518;nuclease activity;0.00881401610114881!GO:0051348;negative regulation of transferase activity;0.00881401610114881!GO:0007088;regulation of mitosis;0.00895269856828249!GO:0006352;transcription initiation;0.00908133840527634!GO:0035258;steroid hormone receptor binding;0.0094295407622844!GO:0006695;cholesterol biosynthetic process;0.0094694170414639!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0095626793305023!GO:0015002;heme-copper terminal oxidase activity;0.0095626793305023!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0095626793305023!GO:0004129;cytochrome-c oxidase activity;0.0095626793305023!GO:0006778;porphyrin metabolic process;0.00962033155791376!GO:0033013;tetrapyrrole metabolic process;0.00962033155791376!GO:0016301;kinase activity;0.00968646900534013!GO:0008312;7S RNA binding;0.0100258340284591!GO:0030041;actin filament polymerization;0.0102959137519096!GO:0045893;positive regulation of transcription, DNA-dependent;0.0107775912768719!GO:0030176;integral to endoplasmic reticulum membrane;0.0109555409324683!GO:0005832;chaperonin-containing T-complex;0.0109555409324683!GO:0030660;Golgi-associated vesicle membrane;0.0110399698528008!GO:0046467;membrane lipid biosynthetic process;0.0111126391956473!GO:0006611;protein export from nucleus;0.0112259278799496!GO:0006740;NADPH regeneration;0.0112475608622672!GO:0006098;pentose-phosphate shunt;0.0112475608622672!GO:0046489;phosphoinositide biosynthetic process;0.0113170810508032!GO:0009967;positive regulation of signal transduction;0.0114400158923602!GO:0001568;blood vessel development;0.0114529225749625!GO:0043022;ribosome binding;0.0116541985923877!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0117564010790536!GO:0009112;nucleobase metabolic process;0.0117749281789154!GO:0012506;vesicle membrane;0.0117749281789154!GO:0051101;regulation of DNA binding;0.0117749281789154!GO:0051098;regulation of binding;0.0119968272697715!GO:0008022;protein C-terminus binding;0.0121751504133958!GO:0048660;regulation of smooth muscle cell proliferation;0.0122693545442794!GO:0022415;viral reproductive process;0.0123532897637276!GO:0030521;androgen receptor signaling pathway;0.0126235386162299!GO:0005862;muscle thin filament tropomyosin;0.0126235386162299!GO:0001726;ruffle;0.0126235386162299!GO:0003711;transcription elongation regulator activity;0.0129426528462877!GO:0015036;disulfide oxidoreductase activity;0.01307513960112!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0131593769029254!GO:0009303;rRNA transcription;0.0132741133880882!GO:0022408;negative regulation of cell-cell adhesion;0.01377988022512!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.01377988022512!GO:0045047;protein targeting to ER;0.01377988022512!GO:0007162;negative regulation of cell adhesion;0.014032208706087!GO:0006302;double-strand break repair;0.0148164095781736!GO:0006284;base-excision repair;0.0150843158114324!GO:0008629;induction of apoptosis by intracellular signals;0.0151046666206947!GO:0042168;heme metabolic process;0.0152477229190713!GO:0006417;regulation of translation;0.0152794176204248!GO:0000776;kinetochore;0.0152970443352678!GO:0003690;double-stranded DNA binding;0.0153603023727882!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0155126834990104!GO:0004177;aminopeptidase activity;0.0157917643138757!GO:0008637;apoptotic mitochondrial changes;0.015841256045104!GO:0016251;general RNA polymerase II transcription factor activity;0.0160390769894653!GO:0043086;negative regulation of catalytic activity;0.0163125935539763!GO:0005869;dynactin complex;0.0164822950414809!GO:0000209;protein polyubiquitination;0.0169429162542731!GO:0006118;electron transport;0.0170868493855706!GO:0044437;vacuolar part;0.0181583928031133!GO:0001944;vasculature development;0.0184276049585397!GO:0007017;microtubule-based process;0.0188933655321314!GO:0000096;sulfur amino acid metabolic process;0.019366180164035!GO:0007266;Rho protein signal transduction;0.0194280312242916!GO:0008154;actin polymerization and/or depolymerization;0.0196888384844142!GO:0045792;negative regulation of cell size;0.0198737033642299!GO:0022890;inorganic cation transmembrane transporter activity;0.0199184170132088!GO:0016584;nucleosome positioning;0.0199246444976223!GO:0007052;mitotic spindle organization and biogenesis;0.0200858259048852!GO:0048468;cell development;0.0204478678316777!GO:0043189;H4/H2A histone acetyltransferase complex;0.020816576176888!GO:0001953;negative regulation of cell-matrix adhesion;0.0211695976441832!GO:0004527;exonuclease activity;0.0212892129036191!GO:0005765;lysosomal membrane;0.0213053783690725!GO:0043065;positive regulation of apoptosis;0.0215655105586689!GO:0047485;protein N-terminus binding;0.0216159545783825!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0218342749694498!GO:0030308;negative regulation of cell growth;0.0219545844098669!GO:0009966;regulation of signal transduction;0.0222170395540435!GO:0006082;organic acid metabolic process;0.0223095869118209!GO:0007040;lysosome organization and biogenesis;0.0225330003181713!GO:0007093;mitotic cell cycle checkpoint;0.0226214769403539!GO:0030119;AP-type membrane coat adaptor complex;0.0226550408823431!GO:0000339;RNA cap binding;0.0229146008666855!GO:0000178;exosome (RNase complex);0.0236809016662223!GO:0051128;regulation of cellular component organization and biogenesis;0.0241503965753346!GO:0019752;carboxylic acid metabolic process;0.0242043859983251!GO:0043068;positive regulation of programmed cell death;0.0242043859983251!GO:0006310;DNA recombination;0.0242043859983251!GO:0008538;proteasome activator activity;0.0245035850938867!GO:0030833;regulation of actin filament polymerization;0.0248117723076302!GO:0007033;vacuole organization and biogenesis;0.0248129564531824!GO:0008243;plasminogen activator activity;0.0248473034131933!GO:0006007;glucose catabolic process;0.0248473034131933!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0251519160033243!GO:0035035;histone acetyltransferase binding;0.0251871513391308!GO:0007346;regulation of progression through mitotic cell cycle;0.0252165756098943!GO:0004003;ATP-dependent DNA helicase activity;0.0256509216953522!GO:0035267;NuA4 histone acetyltransferase complex;0.0256843705985666!GO:0006144;purine base metabolic process;0.0257161498366463!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0259345311927835!GO:0051270;regulation of cell motility;0.0259587011438607!GO:0043624;cellular protein complex disassembly;0.0259741132071062!GO:0019904;protein domain specific binding;0.0261093086180599!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0265134626944091!GO:0006376;mRNA splice site selection;0.0266092725023293!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0266092725023293!GO:0032984;macromolecular complex disassembly;0.0271204605694554!GO:0046822;regulation of nucleocytoplasmic transport;0.0273897650007383!GO:0031663;lipopolysaccharide-mediated signaling pathway;0.0274504110711222!GO:0000910;cytokinesis;0.0274585351058669!GO:0003756;protein disulfide isomerase activity;0.0274585351058669!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0274585351058669!GO:0007034;vacuolar transport;0.0278318480503912!GO:0000123;histone acetyltransferase complex;0.0278481484972993!GO:0051287;NAD binding;0.0278481484972993!GO:0007021;tubulin folding;0.0278481484972993!GO:0040008;regulation of growth;0.0278860546480982!GO:0006779;porphyrin biosynthetic process;0.0280405785939294!GO:0033014;tetrapyrrole biosynthetic process;0.0280405785939294!GO:0006520;amino acid metabolic process;0.0283856905121197!GO:0031901;early endosome membrane;0.0285099402826043!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0290013983752595!GO:0008168;methyltransferase activity;0.0291714151313413!GO:0016741;transferase activity, transferring one-carbon groups;0.0291714151313413!GO:0040011;locomotion;0.029397329824122!GO:0031529;ruffle organization and biogenesis;0.029461081795411!GO:0006497;protein amino acid lipidation;0.0295469359461913!GO:0031625;ubiquitin protein ligase binding;0.0296612880061116!GO:0005092;GDP-dissociation inhibitor activity;0.0296612880061116!GO:0043241;protein complex disassembly;0.0310371922307419!GO:0000922;spindle pole;0.0310605805872841!GO:0005669;transcription factor TFIID complex;0.0314934432522195!GO:0005099;Ras GTPase activator activity;0.0317290589700783!GO:0031272;regulation of pseudopodium formation;0.0317290589700783!GO:0031269;pseudopodium formation;0.0317290589700783!GO:0031344;regulation of cell projection organization and biogenesis;0.0317290589700783!GO:0031268;pseudopodium organization and biogenesis;0.0317290589700783!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0317290589700783!GO:0031274;positive regulation of pseudopodium formation;0.0317290589700783!GO:0000287;magnesium ion binding;0.0317290589700783!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0317610443631895!GO:0030131;clathrin adaptor complex;0.0319861205846764!GO:0005100;Rho GTPase activator activity;0.0330933443862586!GO:0030384;phosphoinositide metabolic process;0.0330933443862586!GO:0031124;mRNA 3'-end processing;0.0331109666091211!GO:0048659;smooth muscle cell proliferation;0.0338155795031296!GO:0009889;regulation of biosynthetic process;0.034057767547154!GO:0006650;glycerophospholipid metabolic process;0.0345934289833942!GO:0009116;nucleoside metabolic process;0.0347789572988915!GO:0005876;spindle microtubule;0.0352033868681837!GO:0016272;prefoldin complex;0.0352756293048286!GO:0042770;DNA damage response, signal transduction;0.0358636511283029!GO:0005784;translocon complex;0.0358636511283029!GO:0030518;steroid hormone receptor signaling pathway;0.0368384570445278!GO:0030032;lamellipodium biogenesis;0.0369250704800147!GO:0006378;mRNA polyadenylation;0.037544846589723!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0379569724617358!GO:0006892;post-Golgi vesicle-mediated transport;0.0380708409911864!GO:0031326;regulation of cellular biosynthetic process;0.0382333183695635!GO:0004680;casein kinase activity;0.0383762284890034!GO:0032507;maintenance of cellular protein localization;0.0383846232560886!GO:0045879;negative regulation of smoothened signaling pathway;0.038681737410006!GO:0051059;NF-kappaB binding;0.0392130978589918!GO:0009124;nucleoside monophosphate biosynthetic process;0.0394747706893112!GO:0009123;nucleoside monophosphate metabolic process;0.0394747706893112!GO:0040012;regulation of locomotion;0.039890149595498!GO:0030496;midbody;0.0401836050349147!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0403295362282067!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0408739755989083!GO:0043414;biopolymer methylation;0.0408928564713674!GO:0030911;TPR domain binding;0.0409028457510981!GO:0008536;Ran GTPase binding;0.0412753691483968!GO:0030433;ER-associated protein catabolic process;0.0418905436825255!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0418905436825255!GO:0046426;negative regulation of JAK-STAT cascade;0.0424258007190514!GO:0042393;histone binding;0.0429500226099322!GO:0006643;membrane lipid metabolic process;0.043521705857899!GO:0006783;heme biosynthetic process;0.0441430336695449!GO:0046966;thyroid hormone receptor binding;0.0441573926568795!GO:0030913;paranodal junction assembly;0.0448269212254964!GO:0032288;myelin formation;0.0448269212254964!GO:0019206;nucleoside kinase activity;0.0466917377885896!GO:0030125;clathrin vesicle coat;0.046857860603332!GO:0030665;clathrin coated vesicle membrane;0.046857860603332!GO:0008213;protein amino acid alkylation;0.0474308214514645!GO:0006479;protein amino acid methylation;0.0474308214514645!GO:0006807;nitrogen compound metabolic process;0.0475371999785243!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0476027727854678!GO:0006979;response to oxidative stress;0.0476177361876452!GO:0045926;negative regulation of growth;0.047663173545715!GO:0005652;nuclear lamina;0.0477512541235135!GO:0030149;sphingolipid catabolic process;0.047932853369615!GO:0051052;regulation of DNA metabolic process;0.047932853369615!GO:0043596;nuclear replication fork;0.0484017751635227!GO:0006917;induction of apoptosis;0.0484499330070304 | |||
|sample_id=11413 | |sample_id=11413 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=artery | |sample_tissue=artery | ||
|top_motifs=SOX{8,9,10}:1.95099988601;RXR{A,B,G}:1.49499664017;AR:1.1609403387;bHLH_family:1.11442761773;TLX1..3_NFIC{dimer}:1.09970838498;NFATC1..3:1.02519653877;POU3F1..4:0.864444764919;GATA6:0.842282802017;TFAP2{A,C}:0.824571730609;IKZF1:0.787925849752;ELF1,2,4:0.781599589466;FOX{I1,J2}:0.77510008081;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.753098346849;GTF2A1,2:0.722554623435;ETS1,2:0.69519219879;TFDP1:0.67940749894;PAX8:0.670491739292;TFAP4:0.665341622928;HES1:0.660311966352;PAX6:0.659703073497;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.655035340254;NFE2L1:0.632093920502;SOX2:0.627761392809;ZNF148:0.603762749664;XCPE1{core}:0.598222338231;TP53:0.589676910423;ONECUT1,2:0.563930003273;YY1:0.56145655705;LEF1_TCF7_TCF7L1,2:0.522355989661;SOX5:0.519941324327;PAX5:0.510398088442;NR3C1:0.46679346107;E2F1..5:0.442331098614;SPIB:0.440001521799;SOX17:0.427331666208;ADNP_IRX_SIX_ZHX:0.407026996382;PAX1,9:0.400762266703;GFI1:0.399051853161;HAND1,2:0.393551074664;ZBTB6:0.390482850451;CRX:0.379483861953;STAT5{A,B}:0.377186036615;EN1,2:0.37395240929;ARID5B:0.373050638888;MYB:0.369325603357;BACH2:0.343723575608;POU2F1..3:0.334129513539;NFY{A,B,C}:0.326221686609;PBX1:0.324701320878;NR5A1,2:0.316789615789;ZNF423:0.31626432909;NKX2-2,8:0.299961154924;NFE2:0.288437899596;HIC1:0.267709094843;FOS_FOS{B,L1}_JUN{B,D}:0.267271976423;LHX3,4:0.261803216839;HOX{A5,B5}:0.260489642962;SPZ1:0.245484190307;PITX1..3:0.227482955046;TEAD1:0.217727661751;RORA:0.206066834939;GFI1B:0.204615198406;TFAP2B:0.200035751678;MTE{core}:0.193738468529;TBP:0.182264460501;ZFP161:0.17534229167;NANOG:0.172724301342;MYOD1:0.162391292616;UFEwm:0.1535721641;ALX1:0.143118058836;FOSL2:0.126051380063;SP1:0.107715000745;TLX2:0.107585085895;GZF1:0.102363017844;FOXA2:0.0826632535039;ESRRA:0.0793708749983;ZNF143:0.068649043979;SRF:0.0511474833363;ZNF238:0.0394010592633;NRF1:0.0336519856133;REST:0.0306548907253;GCM1,2:0.0090527683048;HBP1_HMGB_SSRP1_UBTF:0.00314367058966;SMAD1..7,9:-0.0176859568243;ZIC1..3:-0.0214733473478;FOXM1:-0.032439783506;CDC5L:-0.0335653571427;TAL1_TCF{3,4,12}:-0.0556919174911;HNF4A_NR2F1,2:-0.0558737121111;STAT2,4,6:-0.0569338341711;NFE2L2:-0.0607429795707;SPI1:-0.0624585014487;TFCP2:-0.0885243712054;PPARG:-0.0900476891204;IKZF2:-0.0986934042652;GTF2I:-0.116529391456;EBF1:-0.125447686891;NANOG{mouse}:-0.127809415149;MTF1:-0.145660206434;MED-1{core}:-0.147414142904;GLI1..3:-0.16372876392;EGR1..3:-0.177303381456;HMX1:-0.196273121173;NHLH1,2:-0.20100806213;MAZ:-0.20450564816;LMO2:-0.208485574443;FOXL1:-0.209792058833;HNF1A:-0.216538269888;PAX2:-0.220928494518;ELK1,4_GABP{A,B1}:-0.222480029637;GATA4:-0.246196047858;ALX4:-0.254206018321;NFKB1_REL_RELA:-0.261137958968;VSX1,2:-0.290726203019;HOXA9_MEIS1:-0.298395407145;OCT4_SOX2{dimer}:-0.301734591602;PATZ1:-0.309071149521;NKX3-2:-0.322855546165;MEF2{A,B,C,D}:-0.323547771999;KLF4:-0.338424570284;EVI1:-0.351588425555;XBP1:-0.367803211563;CUX2:-0.368500131066;TOPORS:-0.370850759949;NR6A1:-0.372928138844;ATF6:-0.379038457087;RXRA_VDR{dimer}:-0.379599805201;NKX2-3_NKX2-5:-0.382309553372;PAX3,7:-0.392811044494;ATF2:-0.393333067715;POU6F1:-0.398659676133;PRDM1:-0.402244845327;MZF1:-0.411254982592;JUN:-0.432499646515;RUNX1..3:-0.454628124905;TBX4,5:-0.461709749394;HLF:-0.476395658932;POU1F1:-0.482072776869;BREu{core}:-0.496272480768;STAT1,3:-0.533849378221;FOXD3:-0.534945213528;CREB1:-0.554766358089;IRF7:-0.555472229963;RREB1:-0.557676860402;SNAI1..3:-0.591283814548;IRF1,2:-0.601498321195;RBPJ:-0.607074268954;RFX1:-0.61027203041;ESR1:-0.619007119834;SREBF1,2:-0.620929495536;HSF1,2:-0.627590267421;DMAP1_NCOR{1,2}_SMARC:-0.641509755986;NFIX:-0.646575448196;CEBPA,B_DDIT3:-0.663194346832;AIRE:-0.680440673935;FOX{D1,D2}:-0.681737448824;NFIL3:-0.68223980759;HMGA1,2:-0.692474133443;PRRX1,2:-0.695649796307;POU5F1:-0.699548800659;NR1H4:-0.709345298295;MAFB:-0.711361775621;EP300:-0.727506711805;TGIF1:-0.744976358053;TEF:-0.7605907291;FOXN1:-0.774459766303;BPTF:-0.776832915746;MYBL2:-0.787232461773;FOX{F1,F2,J1}:-0.789943473881;ZEB1:-0.842829348865;ATF5_CREB3:-0.846742459196;ZBTB16:-0.856058565432;FOXO1,3,4:-0.856810904666;FOXQ1:-0.887547422019;MYFfamily:-0.894224081245;PAX4:-0.906569234384;HOX{A4,D4}:-0.912911810821;ZNF384:-0.955557533409;T:-0.962428580572;HIF1A:-0.981269871562;ATF4:-1.00285529391;AHR_ARNT_ARNT2:-1.01115742081;HOX{A6,A7,B6,B7}:-1.03987267572;FOXP1:-1.06566732115;DBP:-1.11739868481;CDX1,2,4:-1.21340801964;FOXP3:-1.24177783112;NKX2-1,4:-1.28159649601;PDX1:-1.34745649336;RFX2..5_RFXANK_RFXAP:-1.34902428891;NKX6-1,2:-1.76614498329;NKX3-1:-1.78322723287 | |top_motifs=SOX{8,9,10}:1.95099988601;RXR{A,B,G}:1.49499664017;AR:1.1609403387;bHLH_family:1.11442761773;TLX1..3_NFIC{dimer}:1.09970838498;NFATC1..3:1.02519653877;POU3F1..4:0.864444764919;GATA6:0.842282802017;TFAP2{A,C}:0.824571730609;IKZF1:0.787925849752;ELF1,2,4:0.781599589466;FOX{I1,J2}:0.77510008081;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.753098346849;GTF2A1,2:0.722554623435;ETS1,2:0.69519219879;TFDP1:0.67940749894;PAX8:0.670491739292;TFAP4:0.665341622928;HES1:0.660311966352;PAX6:0.659703073497;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.655035340254;NFE2L1:0.632093920502;SOX2:0.627761392809;ZNF148:0.603762749664;XCPE1{core}:0.598222338231;TP53:0.589676910423;ONECUT1,2:0.563930003273;YY1:0.56145655705;LEF1_TCF7_TCF7L1,2:0.522355989661;SOX5:0.519941324327;PAX5:0.510398088442;NR3C1:0.46679346107;E2F1..5:0.442331098614;SPIB:0.440001521799;SOX17:0.427331666208;ADNP_IRX_SIX_ZHX:0.407026996382;PAX1,9:0.400762266703;GFI1:0.399051853161;HAND1,2:0.393551074664;ZBTB6:0.390482850451;CRX:0.379483861953;STAT5{A,B}:0.377186036615;EN1,2:0.37395240929;ARID5B:0.373050638888;MYB:0.369325603357;BACH2:0.343723575608;POU2F1..3:0.334129513539;NFY{A,B,C}:0.326221686609;PBX1:0.324701320878;NR5A1,2:0.316789615789;ZNF423:0.31626432909;NKX2-2,8:0.299961154924;NFE2:0.288437899596;HIC1:0.267709094843;FOS_FOS{B,L1}_JUN{B,D}:0.267271976423;LHX3,4:0.261803216839;HOX{A5,B5}:0.260489642962;SPZ1:0.245484190307;PITX1..3:0.227482955046;TEAD1:0.217727661751;RORA:0.206066834939;GFI1B:0.204615198406;TFAP2B:0.200035751678;MTE{core}:0.193738468529;TBP:0.182264460501;ZFP161:0.17534229167;NANOG:0.172724301342;MYOD1:0.162391292616;UFEwm:0.1535721641;ALX1:0.143118058836;FOSL2:0.126051380063;SP1:0.107715000745;TLX2:0.107585085895;GZF1:0.102363017844;FOXA2:0.0826632535039;ESRRA:0.0793708749983;ZNF143:0.068649043979;SRF:0.0511474833363;ZNF238:0.0394010592633;NRF1:0.0336519856133;REST:0.0306548907253;GCM1,2:0.0090527683048;HBP1_HMGB_SSRP1_UBTF:0.00314367058966;SMAD1..7,9:-0.0176859568243;ZIC1..3:-0.0214733473478;FOXM1:-0.032439783506;CDC5L:-0.0335653571427;TAL1_TCF{3,4,12}:-0.0556919174911;HNF4A_NR2F1,2:-0.0558737121111;STAT2,4,6:-0.0569338341711;NFE2L2:-0.0607429795707;SPI1:-0.0624585014487;TFCP2:-0.0885243712054;PPARG:-0.0900476891204;IKZF2:-0.0986934042652;GTF2I:-0.116529391456;EBF1:-0.125447686891;NANOG{mouse}:-0.127809415149;MTF1:-0.145660206434;MED-1{core}:-0.147414142904;GLI1..3:-0.16372876392;EGR1..3:-0.177303381456;HMX1:-0.196273121173;NHLH1,2:-0.20100806213;MAZ:-0.20450564816;LMO2:-0.208485574443;FOXL1:-0.209792058833;HNF1A:-0.216538269888;PAX2:-0.220928494518;ELK1,4_GABP{A,B1}:-0.222480029637;GATA4:-0.246196047858;ALX4:-0.254206018321;NFKB1_REL_RELA:-0.261137958968;VSX1,2:-0.290726203019;HOXA9_MEIS1:-0.298395407145;OCT4_SOX2{dimer}:-0.301734591602;PATZ1:-0.309071149521;NKX3-2:-0.322855546165;MEF2{A,B,C,D}:-0.323547771999;KLF4:-0.338424570284;EVI1:-0.351588425555;XBP1:-0.367803211563;CUX2:-0.368500131066;TOPORS:-0.370850759949;NR6A1:-0.372928138844;ATF6:-0.379038457087;RXRA_VDR{dimer}:-0.379599805201;NKX2-3_NKX2-5:-0.382309553372;PAX3,7:-0.392811044494;ATF2:-0.393333067715;POU6F1:-0.398659676133;PRDM1:-0.402244845327;MZF1:-0.411254982592;JUN:-0.432499646515;RUNX1..3:-0.454628124905;TBX4,5:-0.461709749394;HLF:-0.476395658932;POU1F1:-0.482072776869;BREu{core}:-0.496272480768;STAT1,3:-0.533849378221;FOXD3:-0.534945213528;CREB1:-0.554766358089;IRF7:-0.555472229963;RREB1:-0.557676860402;SNAI1..3:-0.591283814548;IRF1,2:-0.601498321195;RBPJ:-0.607074268954;RFX1:-0.61027203041;ESR1:-0.619007119834;SREBF1,2:-0.620929495536;HSF1,2:-0.627590267421;DMAP1_NCOR{1,2}_SMARC:-0.641509755986;NFIX:-0.646575448196;CEBPA,B_DDIT3:-0.663194346832;AIRE:-0.680440673935;FOX{D1,D2}:-0.681737448824;NFIL3:-0.68223980759;HMGA1,2:-0.692474133443;PRRX1,2:-0.695649796307;POU5F1:-0.699548800659;NR1H4:-0.709345298295;MAFB:-0.711361775621;EP300:-0.727506711805;TGIF1:-0.744976358053;TEF:-0.7605907291;FOXN1:-0.774459766303;BPTF:-0.776832915746;MYBL2:-0.787232461773;FOX{F1,F2,J1}:-0.789943473881;ZEB1:-0.842829348865;ATF5_CREB3:-0.846742459196;ZBTB16:-0.856058565432;FOXO1,3,4:-0.856810904666;FOXQ1:-0.887547422019;MYFfamily:-0.894224081245;PAX4:-0.906569234384;HOX{A4,D4}:-0.912911810821;ZNF384:-0.955557533409;T:-0.962428580572;HIF1A:-0.981269871562;ATF4:-1.00285529391;AHR_ARNT_ARNT2:-1.01115742081;HOX{A6,A7,B6,B7}:-1.03987267572;FOXP1:-1.06566732115;DBP:-1.11739868481;CDX1,2,4:-1.21340801964;FOXP3:-1.24177783112;NKX2-1,4:-1.28159649601;PDX1:-1.34745649336;RFX2..5_RFXANK_RFXAP:-1.34902428891;NKX6-1,2:-1.76614498329;NKX3-1:-1.78322723287 | ||
|xref= | |||
}} | }} | ||
Revision as of 15:40, 17 October 2017
| Name: | Endothelial Cells - Artery, donor3 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12023 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14 |
| CAGEd-oPOSSUM: | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12023
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12023
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.864 |
| 10 | 10 | 0.512 |
| 100 | 100 | 0.517 |
| 101 | 101 | 0.0239 |
| 102 | 102 | 0.716 |
| 103 | 103 | 0.63 |
| 104 | 104 | 0.686 |
| 105 | 105 | 0.754 |
| 106 | 106 | 0.319 |
| 107 | 107 | 0.00579 |
| 108 | 108 | 0.549 |
| 109 | 109 | 0.0826 |
| 11 | 11 | 0.21 |
| 110 | 110 | 0.016 |
| 111 | 111 | 0.817 |
| 112 | 112 | 0.699 |
| 113 | 113 | 0.0805 |
| 114 | 114 | 0.964 |
| 115 | 115 | 0.683 |
| 116 | 116 | 0.468 |
| 117 | 117 | 0.502 |
| 118 | 118 | 0.201 |
| 119 | 119 | 0.972 |
| 12 | 12 | 0.342 |
| 120 | 120 | 0.028 |
| 121 | 121 | 0.251 |
| 122 | 122 | 0.751 |
| 123 | 123 | 0.00866 |
| 124 | 124 | 0.0322 |
| 125 | 125 | 0.676 |
| 126 | 126 | 0.682 |
| 127 | 127 | 0.882 |
| 128 | 128 | 0.385 |
| 129 | 129 | 0.735 |
| 13 | 13 | 0.167 |
| 130 | 130 | 0.217 |
| 131 | 131 | 0.484 |
| 132 | 132 | 0.533 |
| 133 | 133 | 0.274 |
| 134 | 134 | 0.401 |
| 135 | 135 | 0.364 |
| 136 | 136 | 0.00972 |
| 137 | 137 | 0.104 |
| 138 | 138 | 0.999 |
| 139 | 139 | 0.671 |
| 14 | 14 | 0.472 |
| 140 | 140 | 0.82 |
| 141 | 141 | 0.926 |
| 142 | 142 | 0.863 |
| 143 | 143 | 0.174 |
| 144 | 144 | 0.11 |
| 145 | 145 | 0.151 |
| 146 | 146 | 0.131 |
| 147 | 147 | 0.486 |
| 148 | 148 | 0.0462 |
| 149 | 149 | 0.109 |
| 15 | 15 | 0.935 |
| 150 | 150 | 0.0428 |
| 151 | 151 | 0.996 |
| 152 | 152 | 0.0233 |
| 153 | 153 | 0.0312 |
| 154 | 154 | 0.82 |
| 155 | 155 | 0.467 |
| 156 | 156 | 0.417 |
| 157 | 157 | 0.185 |
| 158 | 158 | 0.0373 |
| 159 | 159 | 0.669 |
| 16 | 16 | 1 |
| 160 | 160 | 0.0622 |
| 161 | 161 | 0.447 |
| 162 | 162 | 0.775 |
| 163 | 163 | 0.902 |
| 164 | 164 | 0.662 |
| 165 | 165 | 0.0683 |
| 166 | 166 | 0.214 |
| 167 | 167 | 0.115 |
| 168 | 168 | 0.46 |
| 169 | 169 | 0.128 |
| 17 | 17 | 0.364 |
| 18 | 18 | 0.56 |
| 19 | 19 | 0.253 |
| 2 | 2 | 0.84 |
| 20 | 20 | 0.481 |
| 21 | 21 | 0.617 |
| 22 | 22 | 0.417 |
| 23 | 23 | 0.695 |
| 24 | 24 | 0.442 |
| 25 | 25 | 0.452 |
| 26 | 26 | 0.428 |
| 27 | 27 | 0.794 |
| 28 | 28 | 0.0735 |
| 29 | 29 | 0.575 |
| 3 | 3 | 0.786 |
| 30 | 30 | 0.874 |
| 31 | 31 | 0.766 |
| 32 | 32 | 0.509 |
| 33 | 33 | 0.248 |
| 34 | 34 | 0.226 |
| 35 | 35 | 0.253 |
| 36 | 36 | 0.0997 |
| 37 | 37 | 0.508 |
| 38 | 38 | 0.29 |
| 39 | 39 | 0.584 |
| 4 | 4 | 0.929 |
| 40 | 40 | 0.00449 |
| 41 | 41 | 0.207 |
| 42 | 42 | 0.835 |
| 43 | 43 | 0.426 |
| 44 | 44 | 0.79 |
| 45 | 45 | 0.262 |
| 46 | 46 | 0.948 |
| 47 | 47 | 0.362 |
| 48 | 48 | 0.0743 |
| 49 | 49 | 0.21 |
| 5 | 5 | 0.458 |
| 50 | 50 | 0.61 |
| 51 | 51 | 0.87 |
| 52 | 52 | 0.242 |
| 53 | 53 | 0.443 |
| 54 | 54 | 0.688 |
| 55 | 55 | 0.154 |
| 56 | 56 | 0.835 |
| 57 | 57 | 0.47 |
| 58 | 58 | 0.0544 |
| 59 | 59 | 0.168 |
| 6 | 6 | 0.268 |
| 60 | 60 | 0.381 |
| 61 | 61 | 0.957 |
| 62 | 62 | 0.25 |
| 63 | 63 | 0.403 |
| 64 | 64 | 0.809 |
| 65 | 65 | 0.892 |
| 66 | 66 | 0.0864 |
| 67 | 67 | 0.717 |
| 68 | 68 | 0.219 |
| 69 | 69 | 0.532 |
| 7 | 7 | 0.753 |
| 70 | 70 | 0.24 |
| 71 | 71 | 0.683 |
| 72 | 72 | 0.362 |
| 73 | 73 | 1.45882e-4 |
| 74 | 74 | 0.232 |
| 75 | 75 | 0.424 |
| 76 | 76 | 0.771 |
| 77 | 77 | 0.156 |
| 78 | 78 | 0.595 |
| 79 | 79 | 0.188 |
| 8 | 8 | 0.0378 |
| 80 | 80 | 0.919 |
| 81 | 81 | 0.256 |
| 82 | 82 | 0.175 |
| 83 | 83 | 0.655 |
| 84 | 84 | 0.414 |
| 85 | 85 | 0.196 |
| 86 | 86 | 0.918 |
| 87 | 87 | 0.00149 |
| 88 | 88 | 0.937 |
| 89 | 89 | 0.757 |
| 9 | 9 | 0.516 |
| 90 | 90 | 0.0666 |
| 91 | 91 | 0.602 |
| 92 | 92 | 0.496 |
| 93 | 93 | 0.836 |
| 94 | 94 | 0.19 |
| 95 | 95 | 0.0176 |
| 96 | 96 | 0.583 |
| 97 | 97 | 0.782 |
| 98 | 98 | 0.492 |
| 99 | 99 | 0.00676 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12023
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000047 human endothelial cell of the artery sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
1000413 (endothelial cell of artery)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0000487 (simple squamous epithelium)
0003509 (arterial blood vessel)
0004638 (blood vessel endothelium)
0003915 (endothelial tube)
0004700 (arterial system endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0001917 (endothelium of artery)
0004535 (cardiovascular system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000047 (human endothelial cell of the artery sample)
0000001 (sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)
