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{{f5samples
 
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000015,UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000916,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0000949,UBERON:0001007,UBERON:0001041,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0002050,UBERON:0002100,UBERON:0002107,UBERON:0002330,UBERON:0002365,UBERON:0002368,UBERON:0002384,UBERON:0002405,UBERON:0002417,UBERON:0002423,UBERON:0002530,UBERON:0002532,UBERON:0003104,UBERON:0003894,UBERON:0004119,UBERON:0004120,UBERON:0004161,UBERON:0004185,UBERON:0004921,UBERON:0005057,UBERON:0005172,UBERON:0005173,UBERON:0005177,UBERON:0005256,UBERON:0005423,UBERON:0006235,UBERON:0006925,UBERON:0007026,UBERON:0008835,UBERON:0008836,UBERON:0009142
+
|DRA_sample_Accession=CAGE@SAMD00004984
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000063,CL:0000066,CL:0000134,CL:0000144,CL:0000181,CL:0000182,CL:0000219,CL:0000220,CL:0000223,CL:0000255,CL:0000412,CL:0000414,CL:0000417,CL:0000548,CL:0000723,CL:0002320,CL:0002321,CL:0002371
+
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004984
 +
|accession_numbers=CAGE;DRX008309;DRR009181;DRZ000606;DRZ001991;DRZ011956;DRZ013341
 +
|accession_numbers_RNASeq=sRNA-Seq;DRX037268;DRR041634;DRZ007276
 +
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423
 +
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000181,CL:0000417,CL:0000668,CL:0000412,CL:0000255,CL:0000182
 
|ancestors_in_disease_facet=
 
|ancestors_in_disease_facet=
 +
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000078
 
|comment=
 
|comment=
 
|created_by=
 
|created_by=
 
|creation_date=
 
|creation_date=
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|data_phase=2
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|datafreeze_phase=2
 
|def=
 
|def=
|
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|expression_enrichment_score=
 
|fonse_cell_line=
 
|fonse_cell_line=
 
|fonse_cell_line_closure=
 
|fonse_cell_line_closure=
Line 35: Line 44:
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
 
|has_quality=
 
|has_quality=
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|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor3.CNhs12626.11684-122I1.hg19.nobarcode.bam
 +
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor3.CNhs12626.11684-122I1.hg19.ctss.bed.gz
 +
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor3.CNhs12626.11684-122I1.hg19.nobarcode.rdna.fa.gz
 +
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor3.CNhs12626.11684-122I1.hg38.nobarcode.bam
 +
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor3.CNhs12626.11684-122I1.hg38.nobarcode.ctss.bed.gz
 
|id=FF:11684-122I1
 
|id=FF:11684-122I1
|is_a=EFO:0002091;;FF:0000002;;FF:0000078;;FF:0000210
+
|is_a=EFO:0002091;;FF:0000078
 +
|is_obsolete=
 +
|library_id=CNhs12626
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|library_id_phase_based=2:CNhs12626
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|microRNAs=
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|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11684
 +
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10066.ATGTCA.11684
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11684
 +
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10066.ATGTCA.11684
 
|name=Hepatocyte, donor3
 
|name=Hepatocyte, donor3
 
|namespace=FANTOM5
 
|namespace=FANTOM5
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|profile_cagescan=,,,
 
|profile_cagescan=,,,
 
|profile_hcage=CNhs12626,LSID952,release012,COMPLETED
 
|profile_hcage=CNhs12626,LSID952,release012,COMPLETED
|profile_rnaseq=,,,
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|profile_rnaseq=
 
|profile_srnaseq=,,,
 
|profile_srnaseq=,,,
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|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 56: Line 82:
 
|rna_tube_id=122I1
 
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|rna_weight_ug=10
 
|rna_weight_ug=10
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|rnaseq_library_id=SRhi10066.ATGTCA
 
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Line 69: Line 97:
 
|sample_ethnicity=
 
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|sample_experimental_condition=
 +
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.61417339190854e-249!GO:0005737;cytoplasm;2.24505609798253e-222!GO:0044444;cytoplasmic part;6.86549519722482e-192!GO:0043227;membrane-bound organelle;1.41909850369781e-124!GO:0043231;intracellular membrane-bound organelle;1.41909850369781e-124!GO:0043226;organelle;1.14995806077106e-114!GO:0043229;intracellular organelle;1.9614215074388e-114!GO:0005739;mitochondrion;7.74931483645299e-102!GO:0044422;organelle part;1.28776220369132e-99!GO:0044446;intracellular organelle part;3.84395281437554e-98!GO:0031090;organelle membrane;1.55537144704461e-73!GO:0044237;cellular metabolic process;5.6164014268413e-69!GO:0044429;mitochondrial part;1.08861153367527e-64!GO:0044238;primary metabolic process;3.14917351001658e-64!GO:0009058;biosynthetic process;4.805243579174e-59!GO:0032991;macromolecular complex;3.90339794426591e-56!GO:0030529;ribonucleoprotein complex;1.88073264813147e-55!GO:0043233;organelle lumen;1.7030093406015e-54!GO:0031974;membrane-enclosed lumen;1.7030093406015e-54!GO:0044249;cellular biosynthetic process;8.52444800541383e-50!GO:0005783;endoplasmic reticulum;1.96865363536016e-47!GO:0031967;organelle envelope;1.26845770259825e-46!GO:0031975;envelope;3.82211269099853e-46!GO:0005515;protein binding;8.36760932795838e-46!GO:0019538;protein metabolic process;5.49459273969683e-44!GO:0003723;RNA binding;5.08102467140819e-42!GO:0016491;oxidoreductase activity;1.05927099301774e-40!GO:0044260;cellular macromolecule metabolic process;1.37453484523211e-40!GO:0005740;mitochondrial envelope;1.44773618999054e-39!GO:0044267;cellular protein metabolic process;8.61573975805618e-39!GO:0031966;mitochondrial membrane;1.87444355339439e-38!GO:0005829;cytosol;2.01209037512274e-38!GO:0019866;organelle inner membrane;1.285357315493e-37!GO:0044432;endoplasmic reticulum part;3.65881592798167e-37!GO:0005840;ribosome;8.47331546985209e-37!GO:0005743;mitochondrial inner membrane;8.52295237323049e-37!GO:0006082;organic acid metabolic process;9.02952871290286e-37!GO:0009059;macromolecule biosynthetic process;3.58972702661687e-36!GO:0006412;translation;4.36235468527569e-36!GO:0019752;carboxylic acid metabolic process;9.10752848909276e-36!GO:0033036;macromolecule localization;1.97896768614209e-35!GO:0015031;protein transport;4.08135940877517e-35!GO:0043170;macromolecule metabolic process;4.75440496325341e-34!GO:0045184;establishment of protein localization;1.20313019561665e-33!GO:0008104;protein localization;4.63340808705447e-33!GO:0031980;mitochondrial lumen;9.74786199414255e-33!GO:0005759;mitochondrial matrix;9.74786199414255e-33!GO:0012505;endomembrane system;2.35327054423695e-32!GO:0044428;nuclear part;3.89351413309018e-31!GO:0005789;endoplasmic reticulum membrane;6.93247150558989e-31!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.89555015448385e-31!GO:0044248;cellular catabolic process;9.40379577359302e-31!GO:0003735;structural constituent of ribosome;1.05388681409121e-30!GO:0046907;intracellular transport;1.63234020068454e-28!GO:0033279;ribosomal subunit;3.58794162115249e-27!GO:0006091;generation of precursor metabolites and energy;7.40949403288758e-27!GO:0006396;RNA processing;8.48026652658944e-27!GO:0043234;protein complex;1.29787750008476e-26!GO:0016043;cellular component organization and biogenesis;6.41526144581796e-26!GO:0006886;intracellular protein transport;1.27221589964904e-25!GO:0044255;cellular lipid metabolic process;4.79629669765772e-24!GO:0016071;mRNA metabolic process;7.18652179430247e-24!GO:0006629;lipid metabolic process;1.12261621710821e-23!GO:0009055;electron carrier activity;1.3206469524748e-22!GO:0009056;catabolic process;2.96383757532351e-22!GO:0008380;RNA splicing;3.95702963602638e-22!GO:0051186;cofactor metabolic process;2.38283191929444e-21!GO:0006397;mRNA processing;8.10077169283104e-20!GO:0006119;oxidative phosphorylation;2.22679978353929e-19!GO:0031981;nuclear lumen;4.93619650912376e-19!GO:0044455;mitochondrial membrane part;8.84091778652033e-19!GO:0051649;establishment of cellular localization;1.17112702937056e-18!GO:0051641;cellular localization;1.59548387205859e-18!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.89242871773227e-18!GO:0048037;cofactor binding;3.20890304770216e-18!GO:0032787;monocarboxylic acid metabolic process;7.16001421390222e-18!GO:0006732;coenzyme metabolic process;8.4626524160195e-18!GO:0006807;nitrogen compound metabolic process;8.81139571077649e-18!GO:0006118;electron transport;9.76002227016358e-18!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.92608921437172e-17!GO:0044265;cellular macromolecule catabolic process;5.10704679191637e-17!GO:0065003;macromolecular complex assembly;7.54500029513442e-17!GO:0016874;ligase activity;1.2877298770166e-16!GO:0005746;mitochondrial respiratory chain;1.56878466287151e-16!GO:0006950;response to stress;1.56878466287151e-16!GO:0006457;protein folding;2.33678394190467e-16!GO:0005681;spliceosome;1.52588504343021e-15!GO:0009308;amine metabolic process;2.51216024820237e-15!GO:0002526;acute inflammatory response;2.61723746608657e-15!GO:0006066;alcohol metabolic process;2.85366451902046e-15!GO:0006520;amino acid metabolic process;2.9108911253144e-15!GO:0015935;small ribosomal subunit;8.46916755154395e-15!GO:0000166;nucleotide binding;1.09100467585523e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.15633516179293e-14!GO:0044445;cytosolic part;1.39228751119888e-14!GO:0022607;cellular component assembly;1.62296464443461e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.15534333738677e-14!GO:0003954;NADH dehydrogenase activity;2.15534333738677e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.15534333738677e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;5.55281342248797e-14!GO:0050662;coenzyme binding;6.21873639028451e-14!GO:0006519;amino acid and derivative metabolic process;6.98491955251811e-14!GO:0005794;Golgi apparatus;7.42047512887831e-14!GO:0019941;modification-dependent protein catabolic process;1.2098532863462e-13!GO:0043632;modification-dependent macromolecule catabolic process;1.2098532863462e-13!GO:0006511;ubiquitin-dependent protein catabolic process;1.22535613216533e-13!GO:0044257;cellular protein catabolic process;1.27052461165311e-13!GO:0000502;proteasome complex (sensu Eukaryota);1.41718305752207e-13!GO:0009057;macromolecule catabolic process;1.46269520494353e-13!GO:0006605;protein targeting;1.96213870737425e-13!GO:0015934;large ribosomal subunit;2.36410639485435e-13!GO:0048770;pigment granule;2.99156498231922e-13!GO:0042470;melanosome;2.99156498231922e-13!GO:0016192;vesicle-mediated transport;3.59932743439203e-13!GO:0051082;unfolded protein binding;3.74329389650201e-13!GO:0008202;steroid metabolic process;1.08428842370974e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.27436930343472e-12!GO:0045271;respiratory chain complex I;1.27436930343472e-12!GO:0005747;mitochondrial respiratory chain complex I;1.27436930343472e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.31819585921558e-12!GO:0042773;ATP synthesis coupled electron transport;1.31819585921558e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.61057211754654e-12!GO:0022618;protein-RNA complex assembly;1.79823808793363e-12!GO:0005793;ER-Golgi intermediate compartment;1.81795096216321e-12!GO:0016817;hydrolase activity, acting on acid anhydrides;2.00237770412474e-12!GO:0044262;cellular carbohydrate metabolic process;2.14519728852984e-12!GO:0016462;pyrophosphatase activity;2.40478011210749e-12!GO:0016125;sterol metabolic process;2.76724490998754e-12!GO:0043285;biopolymer catabolic process;3.18228481942031e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.65984119639654e-12!GO:0008610;lipid biosynthetic process;7.72088848879424e-12!GO:0005761;mitochondrial ribosome;7.84781324340111e-12!GO:0000313;organellar ribosome;7.84781324340111e-12!GO:0008134;transcription factor binding;8.59704824429602e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.08470504736705e-11!GO:0017111;nucleoside-triphosphatase activity;1.1634579246993e-11!GO:0005654;nucleoplasm;1.8149662412133e-11!GO:0008135;translation factor activity, nucleic acid binding;3.34462701985439e-11!GO:0002541;activation of plasma proteins during acute inflammatory response;5.59925272414773e-11!GO:0006956;complement activation;5.59925272414773e-11!GO:0006631;fatty acid metabolic process;6.99358076937554e-11!GO:0048193;Golgi vesicle transport;7.57191889223475e-11!GO:0008203;cholesterol metabolic process;8.20468658971756e-11!GO:0006958;complement activation, classical pathway;1.04289723353051e-10!GO:0005792;microsome;1.5276516699405e-10!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;1.92478766378344e-10!GO:0042598;vesicular fraction;2.06745992914565e-10!GO:0030163;protein catabolic process;2.54373692024216e-10!GO:0017076;purine nucleotide binding;2.7982879649949e-10!GO:0005777;peroxisome;2.83088191513493e-10!GO:0042579;microbody;2.83088191513493e-10!GO:0002455;humoral immune response mediated by circulating immunoglobulin;3.84520283330121e-10!GO:0008219;cell death;3.9995317398918e-10!GO:0016265;death;3.9995317398918e-10!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.80497016205896e-10!GO:0005634;nucleus;7.90498473105638e-10!GO:0016787;hydrolase activity;8.19168666652409e-10!GO:0044451;nucleoplasm part;9.91162056334157e-10!GO:0006915;apoptosis;1.08043782131806e-09!GO:0012501;programmed cell death;1.08043782131806e-09!GO:0009063;amino acid catabolic process;1.10040537341447e-09!GO:0051188;cofactor biosynthetic process;1.21941732510883e-09!GO:0044270;nitrogen compound catabolic process;1.55852027102529e-09!GO:0006996;organelle organization and biogenesis;1.91621530208412e-09!GO:0005730;nucleolus;2.3474127607186e-09!GO:0006913;nucleocytoplasmic transport;2.86749760598218e-09!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;3.6290172830911e-09!GO:0006446;regulation of translational initiation;4.24919300323036e-09!GO:0051169;nuclear transport;5.53296572789503e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.54461423047816e-09!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;9.28812926385873e-09!GO:0009310;amine catabolic process;9.89954617405145e-09!GO:0005773;vacuole;9.98741143174359e-09!GO:0016126;sterol biosynthetic process;1.26663647785444e-08!GO:0006512;ubiquitin cycle;1.31597325782578e-08!GO:0006413;translational initiation;1.76009342441155e-08!GO:0045333;cellular respiration;1.9250509548788e-08!GO:0005768;endosome;2.04645884411903e-08!GO:0009060;aerobic respiration;2.33155430841456e-08!GO:0006869;lipid transport;2.49463541860133e-08!GO:0015980;energy derivation by oxidation of organic compounds;2.55434704391499e-08!GO:0046930;pore complex;2.74684926305168e-08!GO:0051187;cofactor catabolic process;3.36074334494106e-08!GO:0005635;nuclear envelope;3.36633440404946e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.66807837391165e-08!GO:0005975;carbohydrate metabolic process;4.0139344222385e-08!GO:0008565;protein transporter activity;4.88488314347316e-08!GO:0000323;lytic vacuole;5.91250297488584e-08!GO:0005764;lysosome;5.91250297488584e-08!GO:0003743;translation initiation factor activity;7.13751624106363e-08!GO:0032553;ribonucleotide binding;7.80923861909344e-08!GO:0032555;purine ribonucleotide binding;7.80923861909344e-08!GO:0009108;coenzyme biosynthetic process;8.2722796040128e-08!GO:0006084;acetyl-CoA metabolic process;8.3441265743367e-08!GO:0016604;nuclear body;9.95962988482642e-08!GO:0006695;cholesterol biosynthetic process;1.002455095744e-07!GO:0006461;protein complex assembly;1.0229701482109e-07!GO:0017038;protein import;1.11652557110831e-07!GO:0043412;biopolymer modification;1.3997837126864e-07!GO:0030554;adenyl nucleotide binding;1.53063768237165e-07!GO:0016829;lyase activity;1.5455224056497e-07!GO:0005506;iron ion binding;1.59625574344974e-07!GO:0046483;heterocycle metabolic process;1.73077313823262e-07!GO:0031982;vesicle;1.88298059684357e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;2.04642091559917e-07!GO:0000375;RNA splicing, via transesterification reactions;2.04642091559917e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.04642091559917e-07!GO:0016740;transferase activity;2.04676849482168e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.11525603869065e-07!GO:0005319;lipid transporter activity;2.19020038963518e-07!GO:0006099;tricarboxylic acid cycle;2.29435590073786e-07!GO:0046356;acetyl-CoA catabolic process;2.29435590073786e-07!GO:0031988;membrane-bound vesicle;2.40055875831211e-07!GO:0016607;nuclear speck;2.67079488903944e-07!GO:0006694;steroid biosynthetic process;2.71406554350521e-07!GO:0031965;nuclear membrane;2.9721010581918e-07!GO:0031410;cytoplasmic vesicle;3.33683821904833e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.89116119088629e-07!GO:0009109;coenzyme catabolic process;4.30352091062442e-07!GO:0005996;monosaccharide metabolic process;4.77363476512648e-07!GO:0016023;cytoplasmic membrane-bound vesicle;4.84831396753327e-07!GO:0019829;cation-transporting ATPase activity;5.75995406945928e-07!GO:0005788;endoplasmic reticulum lumen;8.14672220972628e-07!GO:0019439;aromatic compound catabolic process;8.94797042955944e-07!GO:0019842;vitamin binding;1.01298839043058e-06!GO:0003712;transcription cofactor activity;1.06642843906802e-06!GO:0006006;glucose metabolic process;1.14758604002003e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.17382120803882e-06!GO:0008652;amino acid biosynthetic process;1.21930949829265e-06!GO:0006464;protein modification process;1.21930949829265e-06!GO:0019318;hexose metabolic process;1.21930949829265e-06!GO:0048523;negative regulation of cellular process;1.26202568130898e-06!GO:0016853;isomerase activity;1.36910477387398e-06!GO:0016887;ATPase activity;1.56807853764006e-06!GO:0010467;gene expression;1.63980569346627e-06!GO:0000096;sulfur amino acid metabolic process;1.66313364678864e-06!GO:0008639;small protein conjugating enzyme activity;1.88421395610547e-06!GO:0006752;group transfer coenzyme metabolic process;2.07644082563171e-06!GO:0065002;intracellular protein transport across a membrane;2.3455126359762e-06!GO:0015986;ATP synthesis coupled proton transport;2.36735783700982e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.36735783700982e-06!GO:0004842;ubiquitin-protein ligase activity;2.87954854276489e-06!GO:0044453;nuclear membrane part;4.0947067137602e-06!GO:0042254;ribosome biogenesis and assembly;6.09312672076118e-06!GO:0043069;negative regulation of programmed cell death;6.09312672076118e-06!GO:0048519;negative regulation of biological process;6.09312672076118e-06!GO:0006957;complement activation, alternative pathway;7.00462083505592e-06!GO:0005839;proteasome core complex (sensu Eukaryota);7.04396997918573e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.29338040255133e-06!GO:0004812;aminoacyl-tRNA ligase activity;7.29338040255133e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.29338040255133e-06!GO:0043066;negative regulation of apoptosis;7.90455634404848e-06!GO:0043283;biopolymer metabolic process;8.18964872115206e-06!GO:0030120;vesicle coat;8.47637481138915e-06!GO:0030662;coated vesicle membrane;8.47637481138915e-06!GO:0009259;ribonucleotide metabolic process;9.04582500715872e-06!GO:0002253;activation of immune response;9.40967633585647e-06!GO:0016044;membrane organization and biogenesis;1.15740304192343e-05!GO:0045259;proton-transporting ATP synthase complex;1.18126701188723e-05!GO:0019899;enzyme binding;1.20420245075883e-05!GO:0005770;late endosome;1.2698266664806e-05!GO:0043038;amino acid activation;1.41223675341827e-05!GO:0006418;tRNA aminoacylation for protein translation;1.41223675341827e-05!GO:0043039;tRNA aminoacylation;1.41223675341827e-05!GO:0042157;lipoprotein metabolic process;1.46338648882206e-05!GO:0051246;regulation of protein metabolic process;1.5208207995882e-05!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;1.54440341326162e-05!GO:0042981;regulation of apoptosis;1.6404837946264e-05!GO:0006790;sulfur metabolic process;1.66332103202974e-05!GO:0006979;response to oxidative stress;1.68613429967548e-05!GO:0042623;ATPase activity, coupled;1.79712219661952e-05!GO:0044431;Golgi apparatus part;1.97302827696344e-05!GO:0005643;nuclear pore;1.97386308134595e-05!GO:0005524;ATP binding;2.0366786489678e-05!GO:0019867;outer membrane;2.03931171006854e-05!GO:0032559;adenyl ribonucleotide binding;2.12381454209173e-05!GO:0015078;hydrogen ion transmembrane transporter activity;2.14145693856728e-05!GO:0006163;purine nucleotide metabolic process;2.20599639905925e-05!GO:0044440;endosomal part;2.22889333783278e-05!GO:0010008;endosome membrane;2.22889333783278e-05!GO:0019787;small conjugating protein ligase activity;2.30073222748951e-05!GO:0031968;organelle outer membrane;2.37543574007475e-05!GO:0051789;response to protein stimulus;2.39564434027149e-05!GO:0006986;response to unfolded protein;2.39564434027149e-05!GO:0006953;acute-phase response;2.4126910651704e-05!GO:0016064;immunoglobulin mediated immune response;2.41625303092388e-05!GO:0043067;regulation of programmed cell death;2.4324531523376e-05!GO:0009611;response to wounding;2.4324531523376e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.4324531523376e-05!GO:0005741;mitochondrial outer membrane;2.95084126676373e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.15630459523019e-05!GO:0004298;threonine endopeptidase activity;3.212061202745e-05!GO:0009142;nucleoside triphosphate biosynthetic process;3.25687630235353e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.25687630235353e-05!GO:0050660;FAD binding;3.29290170669029e-05!GO:0009260;ribonucleotide biosynthetic process;3.50528671939119e-05!GO:0006399;tRNA metabolic process;3.56313438721096e-05!GO:0006613;cotranslational protein targeting to membrane;3.58063609713459e-05!GO:0043687;post-translational protein modification;3.59445084967318e-05!GO:0006754;ATP biosynthetic process;3.74191335327062e-05!GO:0006753;nucleoside phosphate metabolic process;3.74191335327062e-05!GO:0006164;purine nucleotide biosynthetic process;3.75993585499346e-05!GO:0009199;ribonucleoside triphosphate metabolic process;3.83551331694826e-05!GO:0008654;phospholipid biosynthetic process;3.8927773936129e-05!GO:0005791;rough endoplasmic reticulum;3.9744251178298e-05!GO:0015918;sterol transport;4.69277224815647e-05!GO:0030301;cholesterol transport;4.69277224815647e-05!GO:0007005;mitochondrion organization and biogenesis;4.7456978011152e-05!GO:0007596;blood coagulation;5.27050983454929e-05!GO:0006725;aromatic compound metabolic process;5.33029335751826e-05!GO:0051170;nuclear import;5.4817874503125e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.872989926704e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.872989926704e-05!GO:0007599;hemostasis;5.872989926704e-05!GO:0050657;nucleic acid transport;5.872989926704e-05!GO:0051236;establishment of RNA localization;5.872989926704e-05!GO:0050658;RNA transport;5.872989926704e-05!GO:0019724;B cell mediated immunity;5.92466941946095e-05!GO:0046034;ATP metabolic process;6.01414808947754e-05!GO:0003924;GTPase activity;6.15034904510571e-05!GO:0009074;aromatic amino acid family catabolic process;6.27253763835091e-05!GO:0009069;serine family amino acid metabolic process;6.49739083131557e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.5841701570002e-05!GO:0009144;purine nucleoside triphosphate metabolic process;6.5841701570002e-05!GO:0009150;purine ribonucleotide metabolic process;7.56534537507926e-05!GO:0048471;perinuclear region of cytoplasm;7.6670942688309e-05!GO:0016881;acid-amino acid ligase activity;7.66771897887651e-05!GO:0006606;protein import into nucleus;7.66771897887651e-05!GO:0016469;proton-transporting two-sector ATPase complex;7.79364171891857e-05!GO:0009141;nucleoside triphosphate metabolic process;7.94162836476574e-05!GO:0000097;sulfur amino acid biosynthetic process;8.32545857628363e-05!GO:0005525;GTP binding;8.89305982451791e-05!GO:0043228;non-membrane-bound organelle;9.04036544384066e-05!GO:0043232;intracellular non-membrane-bound organelle;9.04036544384066e-05!GO:0050817;coagulation;9.13190117416888e-05!GO:0019395;fatty acid oxidation;9.18208420842617e-05!GO:0051540;metal cluster binding;9.38516091094525e-05!GO:0051536;iron-sulfur cluster binding;9.38516091094525e-05!GO:0006403;RNA localization;9.49882359014209e-05!GO:0003714;transcription corepressor activity;0.000104073561047911!GO:0048475;coated membrane;0.000109322220977276!GO:0030117;membrane coat;0.000109322220977276!GO:0051287;NAD binding;0.000118299401871269!GO:0005762;mitochondrial large ribosomal subunit;0.000124575065450645!GO:0000315;organellar large ribosomal subunit;0.000124575065450645!GO:0009152;purine ribonucleotide biosynthetic process;0.000130325166456846!GO:0045454;cell redox homeostasis;0.000133551460220007!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000133551460220007!GO:0005579;membrane attack complex;0.000147012146751705!GO:0006518;peptide metabolic process;0.000147679774623418!GO:0030532;small nuclear ribonucleoprotein complex;0.000148571148033802!GO:0006612;protein targeting to membrane;0.000163412036789339!GO:0031960;response to corticosteroid stimulus;0.000163454430736805!GO:0006366;transcription from RNA polymerase II promoter;0.000163902161062265!GO:0016564;transcription repressor activity;0.000172622275809656!GO:0016769;transferase activity, transferring nitrogenous groups;0.000174311386248971!GO:0031252;leading edge;0.000175592665074039!GO:0030170;pyridoxal phosphate binding;0.000190551185964574!GO:0006635;fatty acid beta-oxidation;0.000193459125308669!GO:0030867;rough endoplasmic reticulum membrane;0.000199047468011368!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000202494552383424!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000206722672733091!GO:0015399;primary active transmembrane transporter activity;0.000206722672733091!GO:0006810;transport;0.000236114662720619!GO:0009064;glutamine family amino acid metabolic process;0.000243438906009876!GO:0009117;nucleotide metabolic process;0.000250016609167851!GO:0022890;inorganic cation transmembrane transporter activity;0.000251564358133042!GO:0016705;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;0.000257422576497492!GO:0031324;negative regulation of cellular metabolic process;0.000261585612367828!GO:0006916;anti-apoptosis;0.000263662970343733!GO:0016830;carbon-carbon lyase activity;0.000275667217483307!GO:0046364;monosaccharide biosynthetic process;0.000292695401113198!GO:0046165;alcohol biosynthetic process;0.000292695401113198!GO:0005798;Golgi-associated vesicle;0.000296666850927518!GO:0006897;endocytosis;0.000297577157344222!GO:0010324;membrane invagination;0.000297577157344222!GO:0006558;L-phenylalanine metabolic process;0.000312487277518866!GO:0006559;L-phenylalanine catabolic process;0.000312487277518866!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000314568695065935!GO:0008361;regulation of cell size;0.00033411349283197!GO:0008286;insulin receptor signaling pathway;0.000359851279468907!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.000375942418459865!GO:0016049;cell growth;0.000393155143230449!GO:0032446;protein modification by small protein conjugation;0.000412927618098974!GO:0006793;phosphorus metabolic process;0.000419161165049462!GO:0006796;phosphate metabolic process;0.000419161165049462!GO:0044272;sulfur compound biosynthetic process;0.000420881138039361!GO:0042802;identical protein binding;0.000420881138039361!GO:0008483;transaminase activity;0.000423731610818269!GO:0000314;organellar small ribosomal subunit;0.000432329997358626!GO:0005763;mitochondrial small ribosomal subunit;0.000432329997358626!GO:0009719;response to endogenous stimulus;0.000439790244581047!GO:0000139;Golgi membrane;0.000466742272714102!GO:0051384;response to glucocorticoid stimulus;0.000494976639583557!GO:0051028;mRNA transport;0.000499304753549564!GO:0001889;liver development;0.000504102785424615!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000507605427531869!GO:0042060;wound healing;0.000524165732751405!GO:0032561;guanyl ribonucleotide binding;0.00055862998589401!GO:0019001;guanyl nucleotide binding;0.00055862998589401!GO:0019319;hexose biosynthetic process;0.000594317880057801!GO:0000245;spliceosome assembly;0.000610978372044337!GO:0016567;protein ubiquitination;0.000614431788337152!GO:0004386;helicase activity;0.000617470321497691!GO:0006259;DNA metabolic process;0.000617525419434757!GO:0006508;proteolysis;0.000618657793459202!GO:0008026;ATP-dependent helicase activity;0.00063032561904441!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000631028370309015!GO:0016746;transferase activity, transferring acyl groups;0.000631264905073226!GO:0007243;protein kinase cascade;0.000649247499789997!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000650050710369827!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000709312394555059!GO:0051234;establishment of localization;0.000743955919500986!GO:0009066;aspartate family amino acid metabolic process;0.000789800778977231!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.000789800778977231!GO:0043021;ribonucleoprotein binding;0.000794991083038819!GO:0006879;cellular iron ion homeostasis;0.00079889472226327!GO:0055072;iron ion homeostasis;0.00079889472226327!GO:0001558;regulation of cell growth;0.000808721252763101!GO:0046983;protein dimerization activity;0.000826010839072676!GO:0015036;disulfide oxidoreductase activity;0.000841268434616005!GO:0000151;ubiquitin ligase complex;0.000851280997410796!GO:0044438;microbody part;0.000870773220950084!GO:0044439;peroxisomal part;0.000870773220950084!GO:0051179;localization;0.000872351262045485!GO:0043681;protein import into mitochondrion;0.000932855961706772!GO:0032934;sterol binding;0.000969171814835515!GO:0033116;ER-Golgi intermediate compartment membrane;0.000969760499530874!GO:0051920;peroxiredoxin activity;0.000983580721343216!GO:0004576;oligosaccharyl transferase activity;0.00103106693415376!GO:0043566;structure-specific DNA binding;0.00103734420926353!GO:0003724;RNA helicase activity;0.00103734420926353!GO:0006364;rRNA processing;0.00105025859565734!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00111620441575806!GO:0015248;sterol transporter activity;0.00112594083370704!GO:0043492;ATPase activity, coupled to movement of substances;0.00114795228558434!GO:0031970;organelle envelope lumen;0.00115228000610502!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00121473347075956!GO:0005758;mitochondrial intermembrane space;0.00122954658099153!GO:0009892;negative regulation of metabolic process;0.00124179897112371!GO:0010033;response to organic substance;0.00131504744524329!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00132668271113337!GO:0009991;response to extracellular stimulus;0.00132668271113337!GO:0008415;acyltransferase activity;0.00135690674352586!GO:0030133;transport vesicle;0.00144957256359072!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00145479234540151!GO:0046870;cadmium ion binding;0.0015141956828954!GO:0051539;4 iron, 4 sulfur cluster binding;0.00151845982275647!GO:0042221;response to chemical stimulus;0.00151845982275647!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00154924173065472!GO:0006749;glutathione metabolic process;0.00155722571162127!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00158150610265774!GO:0010035;response to inorganic substance;0.00167199061235741!GO:0016072;rRNA metabolic process;0.00170897492321207!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00171721927919041!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00171721927919041!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00171721927919041!GO:0008250;oligosaccharyl transferase complex;0.0017333982318454!GO:0016408;C-acyltransferase activity;0.00181300673124708!GO:0006767;water-soluble vitamin metabolic process;0.00183310487006351!GO:0043284;biopolymer biosynthetic process;0.00183310487006351!GO:0030569;chymotrypsin inhibitor activity;0.00185875824681364!GO:0031903;microbody membrane;0.0018607701157455!GO:0005778;peroxisomal membrane;0.0018607701157455!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00189367376403464!GO:0019438;aromatic compound biosynthetic process;0.00202393983706983!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00212283684658318!GO:0006090;pyruvate metabolic process;0.00215753979846361!GO:0030176;integral to endoplasmic reticulum membrane;0.00218064645347009!GO:0019843;rRNA binding;0.00223622432856566!GO:0051427;hormone receptor binding;0.00238100566290672!GO:0009309;amine biosynthetic process;0.00239282780672885!GO:0005048;signal sequence binding;0.00246055533658792!GO:0005507;copper ion binding;0.0026493768006693!GO:0006487;protein amino acid N-linked glycosylation;0.0026742883453537!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.00275358186189096!GO:0003729;mRNA binding;0.00276457488805913!GO:0006525;arginine metabolic process;0.00281154723918266!GO:0016645;oxidoreductase activity, acting on the CH-NH group of donors;0.00286620596608344!GO:0030134;ER to Golgi transport vesicle;0.00293505538270541!GO:0006720;isoprenoid metabolic process;0.00297331296170664!GO:0003995;acyl-CoA dehydrogenase activity;0.00304163650531394!GO:0016885;ligase activity, forming carbon-carbon bonds;0.00310298749495358!GO:0007040;lysosome organization and biogenesis;0.00313246586025287!GO:0016197;endosome transport;0.00314450018419463!GO:0004177;aminopeptidase activity;0.00322598884825503!GO:0016859;cis-trans isomerase activity;0.0032383025682934!GO:0004300;enoyl-CoA hydratase activity;0.00325949760451183!GO:0042627;chylomicron;0.00329527568288796!GO:0015923;mannosidase activity;0.00330904260056876!GO:0015485;cholesterol binding;0.00332649634301328!GO:0006778;porphyrin metabolic process;0.00336915414387052!GO:0033013;tetrapyrrole metabolic process;0.00336915414387052!GO:0043623;cellular protein complex assembly;0.00337658665218043!GO:0006766;vitamin metabolic process;0.0034558722133454!GO:0051168;nuclear export;0.0034558722133454!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00354090148782215!GO:0006094;gluconeogenesis;0.00354090148782215!GO:0006626;protein targeting to mitochondrion;0.00355214084303326!GO:0005905;coated pit;0.00355613881935475!GO:0009081;branched chain family amino acid metabolic process;0.00358800698321847!GO:0016310;phosphorylation;0.00364298564420661!GO:0051537;2 iron, 2 sulfur cluster binding;0.00365013811259497!GO:0016860;intramolecular oxidoreductase activity;0.00365907188434462!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00373483038654423!GO:0044271;nitrogen compound biosynthetic process;0.00379220678508656!GO:0003690;double-stranded DNA binding;0.00390558915033567!GO:0007264;small GTPase mediated signal transduction;0.00399398684227496!GO:0008092;cytoskeletal protein binding;0.00401840460630933!GO:0018196;peptidyl-asparagine modification;0.004102575460665!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.004102575460665!GO:0030127;COPII vesicle coat;0.00411577163359394!GO:0012507;ER to Golgi transport vesicle membrane;0.00411577163359394!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00411577163359394!GO:0035257;nuclear hormone receptor binding;0.00411577163359394!GO:0046394;carboxylic acid biosynthetic process;0.00411577163359394!GO:0016053;organic acid biosynthetic process;0.00411577163359394!GO:0006650;glycerophospholipid metabolic process;0.00422322685953087!GO:0003713;transcription coactivator activity;0.00424716820479293!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00432807323428761!GO:0005577;fibrinogen complex;0.0043872843756071!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.00457889775038714!GO:0031667;response to nutrient levels;0.00482879044758536!GO:0003746;translation elongation factor activity;0.0048835346500579!GO:0016741;transferase activity, transferring one-carbon groups;0.00501044300479278!GO:0048500;signal recognition particle;0.00504614055671061!GO:0005885;Arp2/3 protein complex;0.00510394412448861!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00525418516615327!GO:0006414;translational elongation;0.00525418516615327!GO:0009165;nucleotide biosynthetic process;0.00537606634765931!GO:0000041;transition metal ion transport;0.00537606634765931!GO:0000267;cell fraction;0.00552368517482877!GO:0055088;lipid homeostasis;0.00559774036153076!GO:0006959;humoral immune response;0.00568359165499128!GO:0017127;cholesterol transporter activity;0.00580399031185891!GO:0016051;carbohydrate biosynthetic process;0.00582351878940101!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00585179151187015!GO:0003697;single-stranded DNA binding;0.00592856138147742!GO:0005769;early endosome;0.00598400452297301!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00598400452297301!GO:0051659;maintenance of mitochondrion localization;0.00616312797308272!GO:0051657;maintenance of organelle localization;0.00616312797308272!GO:0042559;pteridine and derivative biosynthetic process;0.00622555615743556!GO:0016779;nucleotidyltransferase activity;0.00672988245307163!GO:0009112;nucleobase metabolic process;0.00693298292405142!GO:0006555;methionine metabolic process;0.00693298292405142!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00693298292405142!GO:0015002;heme-copper terminal oxidase activity;0.00693298292405142!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00693298292405142!GO:0004129;cytochrome-c oxidase activity;0.00693298292405142!GO:0001666;response to hypoxia;0.0070044016106693!GO:0008299;isoprenoid biosynthetic process;0.0070044016106693!GO:0005774;vacuolar membrane;0.00707191433442996!GO:0042558;pteridine and derivative metabolic process;0.0072255186241808!GO:0045947;negative regulation of translational initiation;0.00744550062303431!GO:0006644;phospholipid metabolic process;0.00750824273502642!GO:0030132;clathrin coat of coated pit;0.00762620700926575!GO:0015035;protein disulfide oxidoreductase activity;0.00782487108643339!GO:0009083;branched chain family amino acid catabolic process;0.00788150654822125!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00806464646476637!GO:0042168;heme metabolic process;0.00807751361508446!GO:0006534;cysteine metabolic process;0.00821163185691829!GO:0030139;endocytic vesicle;0.0082511287631593!GO:0030036;actin cytoskeleton organization and biogenesis;0.00836511968042109!GO:0044275;cellular carbohydrate catabolic process;0.00858327527605878!GO:0046474;glycerophospholipid biosynthetic process;0.00864365920536389!GO:0004029;aldehyde dehydrogenase (NAD) activity;0.00905983806446751!GO:0002449;lymphocyte mediated immunity;0.00919198236851424!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00923271513599256!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00923271513599256!GO:0019216;regulation of lipid metabolic process;0.00933141384273621!GO:0006022;aminoglycan metabolic process;0.00957605678501213!GO:0006839;mitochondrial transport;0.00961583257618965!GO:0000049;tRNA binding;0.00964060096709616!GO:0045786;negative regulation of progression through cell cycle;0.00968755087866215!GO:0006402;mRNA catabolic process;0.00990269247970945!GO:0031072;heat shock protein binding;0.00991432755254814!GO:0051346;negative regulation of hydrolase activity;0.0101983158670941!GO:0008430;selenium binding;0.0104683526135227!GO:0016421;CoA carboxylase activity;0.0104925662290456!GO:0046146;tetrahydrobiopterin metabolic process;0.01076196611472!GO:0006595;polyamine metabolic process;0.0112604615440096!GO:0005765;lysosomal membrane;0.011408877256704!GO:0007033;vacuole organization and biogenesis;0.0115556650349576!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.011619574161969!GO:0045047;protein targeting to ER;0.011619574161969!GO:0046467;membrane lipid biosynthetic process;0.011619574161969!GO:0051087;chaperone binding;0.0116817019325925!GO:0008186;RNA-dependent ATPase activity;0.0118278381415299!GO:0000050;urea cycle;0.0118354339633576!GO:0043603;amide metabolic process;0.0118354339633576!GO:0019627;urea metabolic process;0.0118354339633576!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0118938202899342!GO:0008312;7S RNA binding;0.0119733400352426!GO:0005624;membrane fraction;0.0119849353094942!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0123180992182794!GO:0031647;regulation of protein stability;0.0123681708585754!GO:0006572;tyrosine catabolic process;0.0124421921552237!GO:0006954;inflammatory response;0.0125156827239741!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0125402547144383!GO:0043488;regulation of mRNA stability;0.0125402547144383!GO:0043487;regulation of RNA stability;0.0125402547144383!GO:0030433;ER-associated protein catabolic process;0.0128725190521877!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0128725190521877!GO:0051101;regulation of DNA binding;0.0130899881661166!GO:0030663;COPI coated vesicle membrane;0.0130899881661166!GO:0030126;COPI vesicle coat;0.0130899881661166!GO:0016811;hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;0.0132230642488399!GO:0016481;negative regulation of transcription;0.0132657031944943!GO:0006007;glucose catabolic process;0.013512979051514!GO:0016877;ligase activity, forming carbon-sulfur bonds;0.0135211100688485!GO:0045045;secretory pathway;0.0137519256446866!GO:0030880;RNA polymerase complex;0.0140822498964144!GO:0040008;regulation of growth;0.014108416639658!GO:0006643;membrane lipid metabolic process;0.0141474609606497!GO:0003756;protein disulfide isomerase activity;0.0146022115739559!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0146022115739559!GO:0030658;transport vesicle membrane;0.0146764825683174!GO:0009725;response to hormone stimulus;0.0146827334751125!GO:0015886;heme transport;0.0147258344602755!GO:0004364;glutathione transferase activity;0.0149046040947809!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0149739308845324!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0149786680124639!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0154827696704066!GO:0009067;aspartate family amino acid biosynthetic process;0.0155107076035336!GO:0006563;L-serine metabolic process;0.0156254789494456!GO:0009070;serine family amino acid biosynthetic process;0.0158362290000012!GO:0008168;methyltransferase activity;0.0159723836299346!GO:0050878;regulation of body fluid levels;0.0166674645214541!GO:0008139;nuclear localization sequence binding;0.016706129141373!GO:0065008;regulation of biological quality;0.016706129141373!GO:0030203;glycosaminoglycan metabolic process;0.0167198333063891!GO:0006658;phosphatidylserine metabolic process;0.0167913844154356!GO:0033344;cholesterol efflux;0.0170361316361884!GO:0002684;positive regulation of immune system process;0.0171178594900736!GO:0051716;cellular response to stimulus;0.0171216717160988!GO:0031902;late endosome membrane;0.0176328656657776!GO:0009374;biotin binding;0.0177062906613748!GO:0031406;carboxylic acid binding;0.0177306013655495!GO:0031326;regulation of cellular biosynthetic process;0.0177704163691023!GO:0005159;insulin-like growth factor receptor binding;0.0183968644160668!GO:0007006;mitochondrial membrane organization and biogenesis;0.018808027935873!GO:0048518;positive regulation of biological process;0.018808027935873!GO:0065009;regulation of a molecular function;0.018808027935873!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0189116195306642!GO:0018193;peptidyl-amino acid modification;0.0191600864954958!GO:0006081;aldehyde metabolic process;0.0193641718736005!GO:0051252;regulation of RNA metabolic process;0.0198691265132716!GO:0030027;lamellipodium;0.0202661021806402!GO:0016831;carboxy-lyase activity;0.0202948171384937!GO:0009225;nucleotide-sugar metabolic process;0.0202948171384937!GO:0044437;vacuolar part;0.0203304277614872!GO:0033673;negative regulation of kinase activity;0.0208816356013247!GO:0006469;negative regulation of protein kinase activity;0.0208816356013247!GO:0009605;response to external stimulus;0.0214505762084866!GO:0006974;response to DNA damage stimulus;0.0219007564447669!GO:0015924;mannosyl-oligosaccharide mannosidase activity;0.0219007564447669!GO:0002443;leukocyte mediated immunity;0.0219566695753365!GO:0030518;steroid hormone receptor signaling pathway;0.02206338847569!GO:0006892;post-Golgi vesicle-mediated transport;0.0222802960493883!GO:0050748;negative regulation of lipoprotein metabolic process;0.0225531008328886!GO:0006611;protein export from nucleus;0.0228283023289861!GO:0051591;response to cAMP;0.0232693105110825!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0233646240151274!GO:0050749;apolipoprotein E receptor binding;0.0236760040776741!GO:0006417;regulation of translation;0.0237524056268226!GO:0016878;acid-thiol ligase activity;0.0237813409551123!GO:0030212;hyaluronan metabolic process;0.0237813409551123!GO:0017166;vinculin binding;0.0239421653697048!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0247275631586219!GO:0006516;glycoprotein catabolic process;0.0247275631586219!GO:0009889;regulation of biosynthetic process;0.0251965581335911!GO:0016836;hydro-lyase activity;0.0263909645730024!GO:0035258;steroid hormone receptor binding;0.0264599776277621!GO:0030029;actin filament-based process;0.0267545467004562!GO:0006642;triacylglycerol mobilization;0.0269752523146188!GO:0050778;positive regulation of immune response;0.0269865263015196!GO:0004004;ATP-dependent RNA helicase activity;0.0272258936762291!GO:0006527;arginine catabolic process;0.0276207830852494!GO:0001726;ruffle;0.0276207830852494!GO:0002018;renin-angiotensin regulation of aldosterone production;0.0276207830852494!GO:0048143;astrocyte activation;0.0276207830852494!GO:0046622;positive regulation of organ growth;0.0276207830852494!GO:0031701;angiotensin receptor binding;0.0276207830852494!GO:0031703;type 2 angiotensin receptor binding;0.0276207830852494!GO:0045723;positive regulation of fatty acid biosynthetic process;0.0276207830852494!GO:0001999;renal response to blood flow during renin-angiotensin regulation of systemic arterial blood pressure;0.0276207830852494!GO:0042756;drinking behavior;0.0276207830852494!GO:0002019;angiotensin mediated regulation of renal output;0.0276207830852494!GO:0031702;type 1 angiotensin receptor binding;0.0276207830852494!GO:0001998;angiotensin mediated vasoconstriction involved in regulation of systemic arterial blood pressure;0.0276207830852494!GO:0006733;oxidoreduction coenzyme metabolic process;0.0276696695932986!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0283922437779352!GO:0000428;DNA-directed RNA polymerase complex;0.0283922437779352!GO:0046904;calcium oxalate binding;0.0286252389791671!GO:0030568;plasmin inhibitor activity;0.0286252389791671!GO:0016407;acetyltransferase activity;0.0286770630007557!GO:0009086;methionine biosynthetic process;0.0286976675453623!GO:0042158;lipoprotein biosynthetic process;0.0291268426959187!GO:0050821;protein stabilization;0.0291268426959187!GO:0000062;acyl-CoA binding;0.0293677955802184!GO:0006826;iron ion transport;0.0295618255807895!GO:0016568;chromatin modification;0.02957194136326!GO:0042364;water-soluble vitamin biosynthetic process;0.0297615065533298!GO:0006779;porphyrin biosynthetic process;0.0297674072462944!GO:0033014;tetrapyrrole biosynthetic process;0.0297674072462944!GO:0016840;carbon-nitrogen lyase activity;0.0298058307434301!GO:0010038;response to metal ion;0.0299033789634285!GO:0015205;nucleobase transmembrane transporter activity;0.0310691433563439!GO:0032940;secretion by cell;0.0318156649422112!GO:0016563;transcription activator activity;0.0318156649422112!GO:0006693;prostaglandin metabolic process;0.0322356607856849!GO:0006692;prostanoid metabolic process;0.0322356607856849!GO:0046487;glyoxylate metabolic process;0.0326259487535015!GO:0004448;isocitrate dehydrogenase activity;0.0329558046615685!GO:0016791;phosphoric monoester hydrolase activity;0.0334325157949955!GO:0046489;phosphoinositide biosynthetic process;0.0338805095447091!GO:0055092;sterol homeostasis;0.0340585984421348!GO:0042632;cholesterol homeostasis;0.0340585984421348!GO:0000059;protein import into nucleus, docking;0.0344262179843781!GO:0002252;immune effector process;0.0344262179843781!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.0347818901570131!GO:0007265;Ras protein signal transduction;0.0347902687253236!GO:0006891;intra-Golgi vesicle-mediated transport;0.0349751284162958!GO:0016712;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen;0.0352074786142713!GO:0048659;smooth muscle cell proliferation;0.0353707892885069!GO:0015682;ferric iron transport;0.0353891633030344!GO:0015091;ferric iron transmembrane transporter activity;0.0353891633030344!GO:0031643;positive regulation of myelination;0.0353891633030344!GO:0006026;aminoglycan catabolic process;0.0355988506745685!GO:0006027;glycosaminoglycan catabolic process;0.0355988506745685!GO:0006013;mannose metabolic process;0.0356583598889303!GO:0006729;tetrahydrobiopterin biosynthetic process;0.0359437085094788!GO:0045239;tricarboxylic acid cycle enzyme complex;0.036836528588412!GO:0043086;negative regulation of catalytic activity;0.0370885594625472!GO:0051348;negative regulation of transferase activity;0.0370885594625472!GO:0006354;RNA elongation;0.0371003505940537!GO:0006984;ER-nuclear signaling pathway;0.0372744757839375!GO:0006401;RNA catabolic process;0.0375710184838471!GO:0030660;Golgi-associated vesicle membrane;0.0379896282617552!GO:0046912;transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer;0.0382664153031033!GO:0016835;carbon-oxygen lyase activity;0.0385133719997404!GO:0006825;copper ion transport;0.0389611605975136!GO:0016671;oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor;0.0391113977560577!GO:0043433;negative regulation of transcription factor activity;0.0391113977560577!GO:0008234;cysteine-type peptidase activity;0.0394681205699107!GO:0006633;fatty acid biosynthetic process;0.0395824195598175!GO:0008206;bile acid metabolic process;0.0399242336132659!GO:0030151;molybdenum ion binding;0.0404307474254835!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.041369962754262!GO:0006325;establishment and/or maintenance of chromatin architecture;0.041457653608367!GO:0002682;regulation of immune system process;0.0418236698129921!GO:0007030;Golgi organization and biogenesis;0.0419775713150215!GO:0035035;histone acetyltransferase binding;0.0420874843557102!GO:0003899;DNA-directed RNA polymerase activity;0.0422008409094481!GO:0004873;asialoglycoprotein receptor activity;0.0423120317125155!GO:0008112;nicotinamide N-methyltransferase activity;0.0426445347426638!GO:0005784;translocon complex;0.0426445347426638!GO:0043022;ribosome binding;0.0426445347426638!GO:0016052;carbohydrate catabolic process;0.042694769429607!GO:0048487;beta-tubulin binding;0.0431239601065639!GO:0033554;cellular response to stress;0.0432427162093965!GO:0001887;selenium metabolic process;0.0435140918170583!GO:0030137;COPI-coated vesicle;0.0446759310038667!GO:0008287;protein serine/threonine phosphatase complex;0.044854278672889!GO:0043094;metabolic compound salvage;0.0451765268566819!GO:0006818;hydrogen transport;0.045571977132042!GO:0008172;S-methyltransferase activity;0.0456945884016269!GO:0006096;glycolysis;0.0467554123219324!GO:0051235;maintenance of localization;0.0471625041908854!GO:0009116;nucleoside metabolic process;0.0474307375927109!GO:0006509;membrane protein ectodomain proteolysis;0.0476661079795326!GO:0033619;membrane protein proteolysis;0.0476661079795326!GO:0048662;negative regulation of smooth muscle cell proliferation;0.0492131726144367!GO:0031301;integral to organelle membrane;0.0492131726144367!GO:0003812;alternative-complement-pathway C3/C5 convertase activity;0.0499281079516591!GO:0004879;ligand-dependent nuclear receptor activity;0.0499281079516591
 
|sample_id=11684
 
|sample_id=11684
 
|sample_note=
 
|sample_note=
Line 76: Line 105:
 
|sample_tissue=liver
 
|sample_tissue=liver
 
|top_motifs=HNF4A_NR2F1,2:6.97579996858;HNF1A:6.82376001728;FOXA2:5.49424867026;RXR{A,B,G}_{NR1H2,PPAR}dimers:4.39418454623;BPTF:4.15886774687;STAT2,4,6:3.67804846462;FOX{F1,F2,J1}:3.55406534062;NR6A1:3.39281166518;AR:3.23430741007;NKX2-1,4:2.44697285399;CUX2:2.44386516351;FOXD3:2.30453697011;ADNP_IRX_SIX_ZHX:1.98305545074;EVI1:1.97136628576;POU6F1:1.88723689829;MTF1:1.70827961942;NFIL3:1.47057043203;FOX{D1,D2}:1.41974767218;EP300:1.38817008063;DBP:1.36916018282;TFCP2:1.21545333472;TBP:1.1161665906;TAL1_TCF{3,4,12}:1.09183227619;ARID5B:1.06579400271;ALX4:1.06523397877;HOX{A4,D4}:1.06310937857;GATA6:1.05577278346;IKZF2:1.00250794344;PAX4:0.966898606384;MYOD1:0.929764798057;RBPJ:0.918790495765;FOXM1:0.899213263232;NFE2L1:0.889655465178;CEBPA,B_DDIT3:0.87900046393;ATF6:0.852386941342;FOXP1:0.813152487445;GATA4:0.787608147303;FOXQ1:0.783236480786;ALX1:0.777531534011;SP1:0.760517013627;FOXL1:0.752218935292;MYBL2:0.716424975927;FOX{I1,J2}:0.710683328314;CDX1,2,4:0.688464716333;TOPORS:0.683667289182;HLF:0.639996453694;TLX2:0.626087272055;SMAD1..7,9:0.603266500643;IRF7:0.578822407507;TLX1..3_NFIC{dimer}:0.57077832355;MAZ:0.564612615453;MYFfamily:0.552836577314;NR1H4:0.538035262291;MED-1{core}:0.516435684033;MTE{core}:0.510408299717;FOXP3:0.497811463883;PAX1,9:0.47219124161;MAFB:0.442000988998;bHLH_family:0.421681278613;GLI1..3:0.416849415308;NKX3-2:0.408961966612;RORA:0.393059563548;SNAI1..3:0.388225141686;RREB1:0.387053661846;PAX6:0.369357812785;CRX:0.35207297685;RXRA_VDR{dimer}:0.331774541845;HIC1:0.32186072947;SREBF1,2:0.313247300732;ZNF423:0.30219893652;ONECUT1,2:0.294930145845;RXR{A,B,G}:0.247786664546;ZEB1:0.237167463992;HAND1,2:0.185662895329;PAX2:0.180900925268;ZBTB16:0.137420292929;LMO2:0.135804533859;REST:0.111279730398;TGIF1:0.0959135163532;T:0.095375936759;IKZF1:0.0656952883419;IRF1,2:0.0568787022525;HIF1A:0.0262737766994;NFATC1..3:0.0170904845808;PRDM1:0.00682592853106;NHLH1,2:-0.00975376506091;FOXN1:-0.0111466759145;GFI1:-0.0182030297952;SOX5:-0.0240517350798;UFEwm:-0.0535497996482;NFY{A,B,C}:-0.0818739571494;PATZ1:-0.091780873665;SOX{8,9,10}:-0.106828540918;KLF4:-0.116204509956;NR5A1,2:-0.120871982245;PAX3,7:-0.125371541037;ZNF384:-0.129835118972;ATF2:-0.163583461121;ATF5_CREB3:-0.175797330571;GTF2I:-0.176287344936;SPIB:-0.177702349123;SPI1:-0.193896137709;HOXA9_MEIS1:-0.195699423944;NANOG:-0.216600638603;MEF2{A,B,C,D}:-0.243497138895;STAT1,3:-0.24448983731;NFIX:-0.24804334832;ETS1,2:-0.248824113051;ZFP161:-0.259317077017;BREu{core}:-0.265473001059;ELF1,2,4:-0.275128166228;PBX1:-0.275889745818;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.292012080089;ATF4:-0.295378702313;EGR1..3:-0.305595764211;NFE2:-0.346650617692;CREB1:-0.372441585998;GCM1,2:-0.41665092696;AIRE:-0.429788629068;ZNF143:-0.444225839467;TFAP2{A,C}:-0.445621899496;TEAD1:-0.454127821562;TFAP2B:-0.461007943097;SRF:-0.487105904665;PPARG:-0.511031152756;HOX{A5,B5}:-0.535627972579;STAT5{A,B}:-0.551410529508;NFKB1_REL_RELA:-0.570167178892;PDX1:-0.584525377883;TEF:-0.601506211376;HOX{A6,A7,B6,B7}:-0.607808459732;XBP1:-0.611623188124;PAX5:-0.662654725714;GFI1B:-0.664508856861;RUNX1..3:-0.695705687339;XCPE1{core}:-0.696231217482;YY1:-0.725049198202;HMX1:-0.728587030536;SOX17:-0.735099129963;PITX1..3:-0.760098962906;FOXO1,3,4:-0.761273042869;GTF2A1,2:-0.76762075377;GZF1:-0.774212083929;ESR1:-0.822536903031;LEF1_TCF7_TCF7L1,2:-0.862071285821;HMGA1,2:-0.868734074066;NFE2L2:-0.879092585807;NR3C1:-0.882775931017;AHR_ARNT_ARNT2:-0.911128566556;LHX3,4:-0.919193062073;ZBTB6:-0.920521601541;MZF1:-0.924921056152;DMAP1_NCOR{1,2}_SMARC:-0.925081567445;NRF1:-0.929056479209;FOSL2:-0.938382928333;EN1,2:-0.94530991108;SPZ1:-0.973560312493;ZNF238:-0.984239105092;JUN:-0.991170648012;HSF1,2:-1.00246305406;POU2F1..3:-1.02114532339;TP53:-1.02767113638;TFAP4:-1.06981726143;FOS_FOS{B,L1}_JUN{B,D}:-1.0966025243;OCT4_SOX2{dimer}:-1.10476214599;ZIC1..3:-1.10561539541;ZNF148:-1.12917702196;BACH2:-1.17060336076;TFDP1:-1.1802020484;RFX2..5_RFXANK_RFXAP:-1.20172905034;POU1F1:-1.20480554934;ELK1,4_GABP{A,B1}:-1.23440954681;RFX1:-1.23460801546;EBF1:-1.23663866105;ESRRA:-1.24017601252;E2F1..5:-1.25505896692;VSX1,2:-1.26665496626;HES1:-1.2689458053;PRRX1,2:-1.29370110828;TBX4,5:-1.31274214034;HBP1_HMGB_SSRP1_UBTF:-1.3465344684;NKX2-3_NKX2-5:-1.39432678078;NKX3-1:-1.46611967935;MYB:-1.52987969329;NKX6-1,2:-1.57636907708;SOX2:-1.60703098382;CDC5L:-1.63496388586;NANOG{mouse}:-1.65733194671;NKX2-2,8:-1.77467906937;POU3F1..4:-1.79121336108;POU5F1:-2.01019028191;PAX8:-2.20017930743
 
|top_motifs=HNF4A_NR2F1,2:6.97579996858;HNF1A:6.82376001728;FOXA2:5.49424867026;RXR{A,B,G}_{NR1H2,PPAR}dimers:4.39418454623;BPTF:4.15886774687;STAT2,4,6:3.67804846462;FOX{F1,F2,J1}:3.55406534062;NR6A1:3.39281166518;AR:3.23430741007;NKX2-1,4:2.44697285399;CUX2:2.44386516351;FOXD3:2.30453697011;ADNP_IRX_SIX_ZHX:1.98305545074;EVI1:1.97136628576;POU6F1:1.88723689829;MTF1:1.70827961942;NFIL3:1.47057043203;FOX{D1,D2}:1.41974767218;EP300:1.38817008063;DBP:1.36916018282;TFCP2:1.21545333472;TBP:1.1161665906;TAL1_TCF{3,4,12}:1.09183227619;ARID5B:1.06579400271;ALX4:1.06523397877;HOX{A4,D4}:1.06310937857;GATA6:1.05577278346;IKZF2:1.00250794344;PAX4:0.966898606384;MYOD1:0.929764798057;RBPJ:0.918790495765;FOXM1:0.899213263232;NFE2L1:0.889655465178;CEBPA,B_DDIT3:0.87900046393;ATF6:0.852386941342;FOXP1:0.813152487445;GATA4:0.787608147303;FOXQ1:0.783236480786;ALX1:0.777531534011;SP1:0.760517013627;FOXL1:0.752218935292;MYBL2:0.716424975927;FOX{I1,J2}:0.710683328314;CDX1,2,4:0.688464716333;TOPORS:0.683667289182;HLF:0.639996453694;TLX2:0.626087272055;SMAD1..7,9:0.603266500643;IRF7:0.578822407507;TLX1..3_NFIC{dimer}:0.57077832355;MAZ:0.564612615453;MYFfamily:0.552836577314;NR1H4:0.538035262291;MED-1{core}:0.516435684033;MTE{core}:0.510408299717;FOXP3:0.497811463883;PAX1,9:0.47219124161;MAFB:0.442000988998;bHLH_family:0.421681278613;GLI1..3:0.416849415308;NKX3-2:0.408961966612;RORA:0.393059563548;SNAI1..3:0.388225141686;RREB1:0.387053661846;PAX6:0.369357812785;CRX:0.35207297685;RXRA_VDR{dimer}:0.331774541845;HIC1:0.32186072947;SREBF1,2:0.313247300732;ZNF423:0.30219893652;ONECUT1,2:0.294930145845;RXR{A,B,G}:0.247786664546;ZEB1:0.237167463992;HAND1,2:0.185662895329;PAX2:0.180900925268;ZBTB16:0.137420292929;LMO2:0.135804533859;REST:0.111279730398;TGIF1:0.0959135163532;T:0.095375936759;IKZF1:0.0656952883419;IRF1,2:0.0568787022525;HIF1A:0.0262737766994;NFATC1..3:0.0170904845808;PRDM1:0.00682592853106;NHLH1,2:-0.00975376506091;FOXN1:-0.0111466759145;GFI1:-0.0182030297952;SOX5:-0.0240517350798;UFEwm:-0.0535497996482;NFY{A,B,C}:-0.0818739571494;PATZ1:-0.091780873665;SOX{8,9,10}:-0.106828540918;KLF4:-0.116204509956;NR5A1,2:-0.120871982245;PAX3,7:-0.125371541037;ZNF384:-0.129835118972;ATF2:-0.163583461121;ATF5_CREB3:-0.175797330571;GTF2I:-0.176287344936;SPIB:-0.177702349123;SPI1:-0.193896137709;HOXA9_MEIS1:-0.195699423944;NANOG:-0.216600638603;MEF2{A,B,C,D}:-0.243497138895;STAT1,3:-0.24448983731;NFIX:-0.24804334832;ETS1,2:-0.248824113051;ZFP161:-0.259317077017;BREu{core}:-0.265473001059;ELF1,2,4:-0.275128166228;PBX1:-0.275889745818;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.292012080089;ATF4:-0.295378702313;EGR1..3:-0.305595764211;NFE2:-0.346650617692;CREB1:-0.372441585998;GCM1,2:-0.41665092696;AIRE:-0.429788629068;ZNF143:-0.444225839467;TFAP2{A,C}:-0.445621899496;TEAD1:-0.454127821562;TFAP2B:-0.461007943097;SRF:-0.487105904665;PPARG:-0.511031152756;HOX{A5,B5}:-0.535627972579;STAT5{A,B}:-0.551410529508;NFKB1_REL_RELA:-0.570167178892;PDX1:-0.584525377883;TEF:-0.601506211376;HOX{A6,A7,B6,B7}:-0.607808459732;XBP1:-0.611623188124;PAX5:-0.662654725714;GFI1B:-0.664508856861;RUNX1..3:-0.695705687339;XCPE1{core}:-0.696231217482;YY1:-0.725049198202;HMX1:-0.728587030536;SOX17:-0.735099129963;PITX1..3:-0.760098962906;FOXO1,3,4:-0.761273042869;GTF2A1,2:-0.76762075377;GZF1:-0.774212083929;ESR1:-0.822536903031;LEF1_TCF7_TCF7L1,2:-0.862071285821;HMGA1,2:-0.868734074066;NFE2L2:-0.879092585807;NR3C1:-0.882775931017;AHR_ARNT_ARNT2:-0.911128566556;LHX3,4:-0.919193062073;ZBTB6:-0.920521601541;MZF1:-0.924921056152;DMAP1_NCOR{1,2}_SMARC:-0.925081567445;NRF1:-0.929056479209;FOSL2:-0.938382928333;EN1,2:-0.94530991108;SPZ1:-0.973560312493;ZNF238:-0.984239105092;JUN:-0.991170648012;HSF1,2:-1.00246305406;POU2F1..3:-1.02114532339;TP53:-1.02767113638;TFAP4:-1.06981726143;FOS_FOS{B,L1}_JUN{B,D}:-1.0966025243;OCT4_SOX2{dimer}:-1.10476214599;ZIC1..3:-1.10561539541;ZNF148:-1.12917702196;BACH2:-1.17060336076;TFDP1:-1.1802020484;RFX2..5_RFXANK_RFXAP:-1.20172905034;POU1F1:-1.20480554934;ELK1,4_GABP{A,B1}:-1.23440954681;RFX1:-1.23460801546;EBF1:-1.23663866105;ESRRA:-1.24017601252;E2F1..5:-1.25505896692;VSX1,2:-1.26665496626;HES1:-1.2689458053;PRRX1,2:-1.29370110828;TBX4,5:-1.31274214034;HBP1_HMGB_SSRP1_UBTF:-1.3465344684;NKX2-3_NKX2-5:-1.39432678078;NKX3-1:-1.46611967935;MYB:-1.52987969329;NKX6-1,2:-1.57636907708;SOX2:-1.60703098382;CDC5L:-1.63496388586;NANOG{mouse}:-1.65733194671;NKX2-2,8:-1.77467906937;POU3F1..4:-1.79121336108;POU5F1:-2.01019028191;PAX8:-2.20017930743
 +
|xref=
 
}}
 
}}

Latest revision as of 06:56, 17 October 2017

Name:Hepatocyte, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12626
Sample type:primary cells
Genomic View: UCSC
MicroRNAs:Including candidate novel miRNAs(CAGE samplessRNA samples)
Excluding candidate novel miRNAs(CAGE samplessRNA samples)
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueliver
dev stageNA
sexNA
ageNA
cell typehepatocyte
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberRNA1057
catalog numberSC5205
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

Accession numbers
MethodSample accession id
CAGE  SAMD00004984
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12626 CAGE DRX008309 DRR009181
Accession ID Hg19

Library idBAMCTSS
CNhs12626 DRZ000606 DRZ001991
Accession ID Hg38

Library idBAMCTSS
CNhs12626 DRZ011956 DRZ013341
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004984
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10066.ATGTCA sRNA-Seq DRX037268 DRR041634
Accession ID Hg19

Library idBAMCTSS
SRhi10066.ATGTCA DRZ007276


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.758
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma--0.372
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0.758
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.206
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.202
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0922
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.69
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.202
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.26
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0.711
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.28
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.202
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.202
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus--0.599
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.191
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.363
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth--0.0663
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0287
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small--0.519
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.875
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.597
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.202
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas1.019
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.175
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs12626

Jaspar motif P-value
MA0002.2 0.42
MA0003.1 0.0224
MA0004.1 0.797
MA0006.1 0.248
MA0007.1 0.00597
MA0009.1 0.413
MA0014.1 0.626
MA0017.1 3.0979e-25
MA0018.2 0.0177
MA0019.1 0.792
MA0024.1 0.0168
MA0025.1 0.741
MA0027.1 0.776
MA0028.1 0.00341
MA0029.1 0.756
MA0030.1 0.0161
MA0031.1 0.0607
MA0035.2 0.014
MA0038.1 0.497
MA0039.2 0.482
MA0040.1 0.62
MA0041.1 0.894
MA0042.1 0.751
MA0043.1 0.355
MA0046.1 1.327e-69
MA0047.2 4.63124e-5
MA0048.1 0.619
MA0050.1 0.859
MA0051.1 0.955
MA0052.1 0.858
MA0055.1 0.642
MA0057.1 0.196
MA0058.1 0.759
MA0059.1 0.46
MA0060.1 0.0262
MA0061.1 0.0116
MA0062.2 1.62359e-6
MA0065.2 8.17741e-13
MA0066.1 0.568
MA0067.1 0.0191
MA0068.1 0.0567
MA0069.1 0.207
MA0070.1 0.446
MA0071.1 0.265
MA0072.1 0.139
MA0073.1 0.895
MA0074.1 0.402
MA0076.1 1.72196e-4
MA0077.1 0.418
MA0078.1 0.775
MA0079.2 0.943
MA0080.2 3.25646e-5
MA0081.1 0.0277
MA0083.1 0.149
MA0084.1 0.903
MA0087.1 0.342
MA0088.1 0.362
MA0090.1 0.876
MA0091.1 0.911
MA0092.1 0.525
MA0093.1 0.776
MA0099.2 5.93952e-18
MA0100.1 0.154
MA0101.1 6.46738e-4
MA0102.2 0.286
MA0103.1 0.0599
MA0104.2 0.573
MA0105.1 0.0597
MA0106.1 0.71
MA0107.1 5.05165e-4
MA0108.2 0.0657
MA0111.1 0.867
MA0112.2 4.22876e-5
MA0113.1 0.0588
MA0114.1 1.22125e-28
MA0115.1 4.20168e-8
MA0116.1 0.00543
MA0117.1 0.457
MA0119.1 0.0514
MA0122.1 0.861
MA0124.1 0.98
MA0125.1 0.397
MA0131.1 0.334
MA0135.1 0.846
MA0136.1 1.15362e-4
MA0137.2 0.00135
MA0138.2 0.0654
MA0139.1 0.809
MA0140.1 0.564
MA0141.1 2.24522e-4
MA0142.1 0.199
MA0143.1 0.311
MA0144.1 0.00273
MA0145.1 0.362
MA0146.1 0.424
MA0147.1 0.798
MA0148.1 0.00266
MA0149.1 0.801
MA0150.1 0.0874
MA0152.1 6.06755e-4
MA0153.1 1.30752e-36
MA0154.1 0.287
MA0155.1 0.204
MA0156.1 5.53798e-4
MA0157.1 0.379
MA0159.1 1.91505e-4
MA0160.1 0.0147
MA0162.1 0.919
MA0163.1 0.311
MA0164.1 0.472
MA0258.1 0.00162
MA0259.1 0.323



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs12626

Novel motif P-value
1 0.171
10 0.82
100 0.246
101 0.905
102 0.0634
103 0.319
104 0.505
105 0.43
106 0.00392
107 0.00587
108 0.251
109 0.902
11 0.403
110 0.577
111 0.307
112 0.0129
113 2.31647e-4
114 0.15
115 0.854
116 0.35
117 0.275
118 0.314
119 0.0079
12 0.57
120 0.688
121 0.903
122 0.221
123 0.796
124 0.0803
125 0.118
126 0.553
127 0.0896
128 0.16
129 0.727
13 0.0898
130 0.0127
131 0.981
132 0.0556
133 0.319
134 0.775
135 0.525
136 0.0894
137 0.299
138 0.29
139 0.962
14 0.631
140 0.537
141 0.136
142 0.273
143 0.00249
144 0.445
145 0.265
146 0.47
147 0.948
148 0.175
149 0.146
15 1
150 0.891
151 0.451
152 0.949
153 0.816
154 0.406
155 0.0485
156 0.708
157 0.469
158 0.311
159 0.0708
16 0.603
160 0.503
161 0.973
162 0.589
163 0.598
164 0.378
165 0.00189
166 0.283
167 0.492
168 0.63
169 0.001
17 0.447
18 0.639
19 0.00157
2 0.185
20 0.98
21 0.12
22 0.0783
23 0.0518
24 0.76
25 0.802
26 0.251
27 0.514
28 0.946
29 0.94
3 0.528
30 0.646
31 0.22
32 0.406
33 0.995
34 0.254
35 0.299
36 0.391
37 0.982
38 0.227
39 0.238
4 0.156
40 0.258
41 0.0829
42 0.977
43 0.253
44 0.00459
45 0.332
46 0.254
47 0.818
48 0.488
49 0.151
5 0.285
50 0.399
51 0.937
52 0.0419
53 0.846
54 0.509
55 0.829
56 0.891
57 0.968
58 0.253
59 0.215
6 0.619
60 0.0222
61 0.662
62 0.211
63 0.15
64 0.659
65 0.0753
66 0.0539
67 0.0742
68 0.936
69 0.99
7 0.101
70 0.98
71 0.265
72 0.662
73 0.962
74 0.888
75 0.565
76 0.329
77 0.0271
78 0.175
79 0.829
8 0.137
80 0.984
81 0.721
82 0.307
83 0.972
84 0.45
85 0.00756
86 0.763
87 0.0394
88 0.318
89 0.278
9 0.842
90 0.511
91 0.175
92 0.344
93 0.586
94 0.194
95 0.14
96 0.0451
97 0.92
98 0.957
99 0.0694



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs12626


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000181 (metabolising cell)
0000417 (endopolyploid cell)
0000668 (parenchymal cell)
0000412 (polyploid cell)
0000255 (eukaryotic cell)
0000182 (hepatocyte)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000078 (human hepatocyte sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)