FF:11771-123I7: Difference between revisions

Revision as of 17:28, 29 June 2012

Name:	salivary acinar cells, donor1
Species:
Library ID:	{{{library_id}}}
Sample type:	{{{sample_category}}}

Additional information

Sample information

strain	NA
tissue	parotid gland
dev stage	NA
sex	female
age	40
cell type	salivary acinar cell
cell line	NA
company	NA
collaboration	Swati Pradhan
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000278 human salivary acinar cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002321 (embryonic cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000150 (glandular epithelial cell)
0000154 (protein secreting cell)
0000255 (eukaryotic cell)
0000622 (acinar cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0002623 (acinar cell of salivary gland)
0000223 (endodermal cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0001044 (saliva-secreting gland)
0002530 (gland)
0000033 (head)
0000926 (mesoderm)
0000479 (tissue)
0001007 (digestive system)
0000077 (mixed endoderm/mesoderm-derived structure)
0000466 (immaterial anatomical entity)
0004121 (ectoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0004119 (endoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000480 (anatomical group)
0000923 (germ layer)
0002050 (embryonic structure)
0004921 (subdivision of digestive tract)
0000161 (orifice)
0005423 (developing anatomical structure)
0001444 (subdivision of head)
0002553 (anatomical cavity)
0000477 (anatomical cluster)
0000481 (multi-tissue structure)
0000467 (anatomical system)
0001062 (anatomical entity)
0005291 (embryonic tissue)
0003102 (surface structure)
0000078 (mixed ectoderm/mesoderm/endoderm-derived structure)
0003293 (gland of oral region)
0003294 (gland of foregut)
0010047 (oral gland)
0002365 (exocrine gland)
0003104 (mesenchyme)
0000464 (anatomical space)
0000925 (endoderm)
0003408 (gland of gut)
0006598 (presumptive structure)
0004185 (endodermal part of digestive tract)
0002532 (epiblast (generic))
0001555 (digestive tract)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000924 (ectoderm)
0000165 (mouth)
0007026 (primitive gut)
0001041 (foregut)
0000166 (oral opening)
0000167 (oral cavity)
0002330 (exocrine system)
0009142 (entire embryonic mesenchyme)
0000930 (stomodeum)
0006601 (presumptive ectoderm)
0006595 (presumptive endoderm)
0006603 (presumptive mesoderm)

FF: FANTOM5
NA

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 6: / Line 6: @@
 |created_by=
 |creation_date=
+|datafreeze_phase=1
 |def=
 |expression_enrichment_score=chr6:1312325..1312340,+!p1@FOXQ1!1.90!126.40!FOXQ1;;chr5:134369879..134369898,-!p2@PITX1!1.73!52.22!PITX1;;chr6:10415276..10415341,-!p2@TFAP2A!1.70!59.26!TFAP2A;;chr5:134369905..134369972,-!p1@PITX1!1.67!68.38!PITX1;;chr3:189507432..189507459,+!p1@TP63!1.65!43.72!TP63;;chr1:209979467..209979494,-!p1@IRF6!1.61!44.55!IRF6;;chr12:54785054..54785072,-!p4@ZNF385A!1.59!43.10!ZNF385A;;chr13:73633131..73633149,+!p1@KLF5!1.58!374.44!KLF5;;chr5:2751762..2751784,-!p1@IRX2!1.58!37.09!IRX2;;chr12:54785074..54785122,-!p2@ZNF385A!1.56!53.46!ZNF385A;;chr11:34642612..34642646,+!p1@EHF!1.55!34.61!EHF;;chr6:10412600..10412637,-!p1@TFAP2A!1.53!54.50!TFAP2A;;chr15:83953397..83953425,-!p1@BNC1!1.51!35.64!BNC1;;chr6:10415484..10415508,-!p3@TFAP2A!1.41!24.45!TFAP2A;;chr11:113930425..113930471,+!p1@ZBTB16!1.39!33.36!ZBTB16;;chr2:122042770..122042785,-!p1@TFCP2L1!1.34!20.93!TFCP2L1;;chr19:46801639..46801699,+!p1@HIF3A!1.34!20.72!HIF3A;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.30!18.86!ZBED1;;chr5:2751785..2751808,-!p2@IRX2!1.28!18.03!IRX2;;chr4:57547454..57547469,-!p1@HOPX!1.28!18.03!HOPX;;chr14:37131058..37131139,+!p1@PAX9!1.27!17.61!PAX9;;chr16:86600426..86600441,+!p1@FOXC2!1.21!37.51!FOXC2;;chr5:3595977..3595999,+!p1@IRX1!1.20!14.92!IRX1;;chr5:3595934..3595957,+!p2@IRX1!1.20!14.71!IRX1;;chr12:66218598..66218645,+!p2@HMGA2!1.18!64.44!HMGA2;;chr14:61116183..61116208,-!p1@SIX1!1.18!53.05!SIX1;;chr11:34645791..34645836,+!p3@EHF!1.16!13.47!EHF;;chr12:66218255..66218304,+!p3@HMGA2!1.13!33.78!HMGA2;;chr2:45236540..45236577,-!p1@SIX2!1.13!12.64!SIX2;;chr8:128748308..128748324,+!p2@MYC!1.12!335.07!MYC;;chr16:54320101..54320125,-!p4@IRX3!1.11!16.99!IRX3;;chr3:111314186..111314204,-!p1@ZBED2!1.09!11.19!ZBED2;;chr1:6479968..6479986,-!p1@HES2!1.09!11.19!HES2;;chr17:7492684..7492778,-!p2@SOX15!1.03!20.93!SOX15;;chr19:45908292..45908374,-!p1@PPP1R13L!1.02!84.54!PPP1R13L;;chr6:10412576..10412599,-!p5@TFAP2A!1.01!9.32!TFAP2A;;chr11:129245526..129245553,+!p1@BARX2!1.01!9.12!BARX2;;chr1:24645832..24645853,+!p1@GRHL3!1.01!9.12!GRHL3;;chr20:51588873..51588953,+!p1@TSHZ2!1.00!12.02!TSHZ2;;chr2:19558373..19558392,-!p1@OSR1!0.99!24.45!OSR1;;chr13:73636252..73636307,+!p2@KLF5!0.98!10.15!KLF5;;chr21:47063625..47063658,+!p1@PCBP3!0.94!35.02!PCBP3;;chr12:53625966..53626012,-!p2@RARG!0.94!20.93!RARG;;chr3:189507460..189507471,+!p3@TP63!0.94!7.67!TP63;;chr1:158979792..158979814,+!p2@IFI16!0.93!74.39!IFI16;;chr2:178128149..178128198,-!p2@NFE2L2!0.92!40.41!NFE2L2;;chr1:158979872..158979898,+!p3@IFI16!0.92!23.21!IFI16;;chr11:113930401..113930422,+!p3@ZBTB16!0.92!7.25!ZBTB16;;chr19:33793430..33793447,-!p1@CEBPA!0.91!31.08!CEBPA;;chr2:46524897..46524911,+!p2@EPAS1!0.91!20.72!EPAS1;;chr12:66218836..66218888,+!p1@HMGA2!0.90!68.38!HMGA2;;chr20:6748325..6748352,+!p1@BMP2!0.90!10.15!BMP2;;chr19:46800289..46800327,+!p2@HIF3A!0.89!6.84!HIF3A;;chr10:8096772..8096787,+!p2@GATA3!0.88!7.87!GATA3;;chr11:34663913..34663945,+!p6@EHF!0.88!6.63!EHF;;chr5:3595961..3595975,+!p3@IRX1!0.88!6.63!IRX1;;chr9:14314566..14314618,-!p1@NFIB!0.86!79.78!NFIB;;chr1:61548225..61548299,+!p1@NFIA!0.85!83.92!NFIA;;chr14:21566731..21566836,-!p1@ZNF219!0.85!69.42!ZNF219;;chr1:209979411..209979433,-!p2@IRF6!0.85!6.01!IRF6;;chr8:49833948..49833973,-!p2@SNAI2!0.83!39.58!SNAI2;;chr2:60780753..60780800,-!p1@BCL11A!0.83!30.05!BCL11A;;chr21:40177845..40177863,+!p1@ETS2!0.82!359.73!ETS2;;chr7:42276787..42276815,-!p1@GLI3!0.82!15.75!GLI3;;chr2:214015111..214015179,-!p1@IKZF2!0.82!10.36!IKZF2;;chr17:7493405..7493419,-!p1@SOX15!0.82!5.59!SOX15;;chr13:41240717..41240735,-!p2@FOXO1!0.81!39.79!FOXO1;;chr2:66662281..66662308,+!p1@MEIS1!0.81!20.31!MEIS1;;chr2:66662249..66662267,+!p2@MEIS1!0.80!21.76!MEIS1;;chr20:55204351..55204377,+!p1@TFAP2C!0.80!6.84!TFAP2C;;chr1:24646263..24646277,+!p4@GRHL3!0.79!5.18!GRHL3;;chr16:86600870..86600921,+!p2@FOXC2!0.78!4.97!FOXC2;;chr16:54320646..54320672,-!p2@IRX3!0.77!7.87!IRX3;;chr12:66218573..66218596,+!p7@HMGA2!0.77!7.67!HMGA2;;chr16:54320617..54320643,-!p3@IRX3!0.77!6.42!IRX3;;chr11:113930291..113930339,+!p2@ZBTB16!0.76!8.08!ZBTB16;;chr4:57522166..57522260,-!p2@HOPX!0.76!5.59!HOPX;;chr13:41240737..41240787,-!p1@FOXO1!0.75!60.92!FOXO1;;chr8:48650715..48650735,-!p1@CEBPD!0.74!645.06!CEBPD;;chr2:43453734..43453751,-!p1@ZFP36L2!0.74!533.58!ZFP36L2;;chr8:49833978..49833996,-!p1@SNAI2!0.74!102.78!SNAI2;;chr3:126076242..126076257,-!p1@KLF15!0.74!5.80!KLF15;;chr14:61116168..61116180,-!p2@SIX1!0.74!5.18!SIX1;;chr15:83953373..83953386,-!p2@BNC1!0.74!4.56!BNC1;;chrX:106960285..106960299,-!p1@TSC22D3!0.73!133.03!TSC22D3;;chr9:77112225..77112238,+!p2@RORB!0.73!4.35!RORB;;chr8:10588010..10588030,-!p1@SOX7!0.73!4.35!SOX7;;chr11:129245736..129245758,+!p2@BARX2!0.73!4.35!BARX2;;chr3:193853927..193853944,+!p1@HES1!0.72!157.48!HES1;;chr8:128750654..128750793,+!p3@MYC!0.72!18.86!MYC;;chr18:77155922..77155939,+!p1@NFATC1!0.72!12.64!NFATC1;;chr17:53342311..53342400,+!p1@HLF!0.72!4.97!HLF;;chr2:60780607..60780624,-!p2@BCL11A!0.71!13.88!BCL11A;;chr9:2158443..2158481,+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r19:19976714..19976729,+!p3@ZNF253!0.20!1.86!ZNF253;;chr11:65686802..65686818,+!p6@DRAP1!0.20!1.66!DRAP1;;chr12:3068501..3068515,+!p4@TEAD4!0.20!1.66!TEAD4;;chr1:158969752..158969780,+!p6@IFI16!0.20!1.66!IFI16;;chr19:56152471..56152482,+!p6@ZNF580!0.20!1.45!ZNF580;;chr1:43148244..43148275,+!p5@YBX1!0.20!1.45!YBX1;;chr12:50479101..50479108,+!p3@SMARCD1!0.20!1.45!SMARCD1;;chr7:27788205..27788255,+!p2@TAX1BP1!0.20!1.45!TAX1BP1;;chr12:19592847..19592882,+!p8@AEBP2!0.20!1.24!AEBP2;;chr12:49445907..49445923,-!p2@MLL2!0.20!1.24!MLL2;;chr18:51690935..51690957,-!p8@MBD2!0.20!1.24!MBD2;;chr18:74207186..74207204,-!p3@ZNF516!0.20!1.24!ZNF516;;chr3:42947600..42947680,+!p1@ZNF662!0.20!1.24!ZNF662;;chr4:103422076..103422117,+!p5@NFKB1!0.20!1.24!NFKB1;;chr3:37216069..37216075,-!p4@LRRFIP2!0.20!1.04!LRRFIP2;;chr11:6947720..6947812,+!p1@ZNF215!0.20!1.04!ZNF215;;chr6:21594391..21594431,+!p9@SOX4!0.20!1.04!SOX4;;chr9:128510454..128510469,+!p3@PBX3!0.20!1.04!PBX3;;chr19:58666502..58666519,-!p4@ZNF329!0.20!0.83!ZNF329;;chr7:106826626..106826630,+!p3@HBP1!0.20!0.83!HBP1;;chr9:110250697..110250738,-!p2@KLF4!0.20!0.83!KLF4;;chr16:89940012..89940059,+!p1@TCF25!0.19!121.84!TCF25;;chr7:102985160..102985273,-!p1@DNAJC2!0.19!34.40!DNAJC2;;chr1:59165724..59165751,-!p1@MYSM1!0.19!31.70!MYSM1;;chr19:53606636..53606692,-!p1@ZNF160!0.19!24.87!ZNF160;;chr6:28109608..28109693,+!p1@ZNF192!0.19!23.00!ZNF192;;chr11:130184753..130184824,-!p1@ZBTB44!0.19!18.44!ZBTB44;;chr6:126112074..126112144,+!p1@NCOA7!0.19!18.24!NCOA7;;chr4:95128999..95129056,+!p2@SMARCAD1!0.19!14.09!SMARCAD1;;chr16:68573182..68573228,+!p1@ZFP90!0.19!12.85!ZFP90;;chr19:53141584..53141625,-!p2@ZNF83!0.19!10.36!ZNF83;;chr20:3388238..3388323,-!p1@C20orf194!0.19!9.32!C20orf194;;chr17:17740330..17740349,-!p3@SREBF1!0.19!8.70!SREBF1;;chr19:44952635..44952668,-!p1@ZNF229!0.19!6.22!ZNF229;;chr19:44488330..44488379,+!p1@ZNF155!0.19!6.01!ZNF155;;chr19:21512144..21512191,-!p2@ZNF708!0.19!5.80!ZNF708;;chr16:29816957..29817031,+!p7@MAZ!0.19!5.59!MAZ;;chr3:37217736..37217753,-!p2@LRRFIP2!0.19!5.18!LRRFIP2;;chrX:129402768..129402796,-!p2@ZNF280C!0.19!3.52!ZNF280C;;chr5:178487354..178487408,+!p1@ZNF354C!0.19!3.32!ZNF354C;;chr19:44860820..44860843,-!p1@ZFP112,p1@ZNF285!0.19!3.11!ZFP112;;chr1:211432823..211432851,+!p3@RCOR3!0.19!2.69!RCOR3;;chr6:144289132..144289134,-!p3@PLAGL1!0.19!2.49!PLAGL1;;chr6:151712732..151712763,-!p3@ZBTB2!0.19!2.07!ZBTB2;;chr9:128509635..128509658,+!p2@PBX3!0.19!1.86!PBX3;;chr7:64254771..64254782,+!p3@ZNF138!0.19!1.66!ZNF138;;chr21:34144157..34144175,-!p3@GCFC1!0.19!1.45!GCFC1;;chr19:57078386..57078407,+!p3@ZNF470!0.19!1.04!ZNF470;;chr20:33413523..33413534,-!p3@NCOA6!0.19!1.04!NCOA6;;chr3:71632811..71632825,-!p19@FOXP1!0.19!1.04!FOXP1;;chr15:56535922..56535936,-!p5@RFX7!0.19!1.04!RFX7;;chr16:4365715..4365746,+!p@chr16:4365715..4365746,+!0.19!1.04!GLIS2;;chr6:21597283..21597312,+!p7@SOX4!0.19!1.04!SOX4;;chr8:116681022..116681042,-!p10@TRPS1!0.19!1.04!TRPS1;;chr9:110251836..110251887,-!p4@KLF4!0.19!1.04!KLF4;;chrX:129402754..129402766,-!p3@ZNF280C!0.19!1.04!ZNF280C;;chr9:2017159..2017186,+!p12@SMARCA2!0.19!1.04!SMARCA2;;chr2:178129518..178129533,-!p10@NFE2L2!0.19!0.83!NFE2L2;;chr8:28243785..28243799,-!p6@ZNF395!0.19!0.83!ZNF395;;chr18:53255839..53255854,-!p13@TCF4!0.19!0.83!TCF4;;chr10:60145155..60145206,+!p1@TFAM!0.18!58.85!TFAM;;chr11:12695944..12695989,+!p1@TEAD1!0.18!48.07!TEAD1;;chr14:75894714..75894733,+!p1@JDP2!0.18!38.75!JDP2;;chr3:101395963..101395993,-!p1@ZBTB11!0.18!20.31!ZBTB11;;

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FF:11771-123I7: Difference between revisions

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Revision as of 17:28, 29 June 2012

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0