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FF:11855-125A1

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Name:Mouse CD8+ T Cells, donor1
Species:Mouse (Mus musculus)
Library ID:{{{library_id}}}
Sample type:{{{sample_category}}}
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuespleen
dev stageNA
sexNA
ageNA
cell typet cell, CD8+
cell lineNA
companyNA
collaborationKawamoto (RCAI)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
Download raw sequence, BAM & CTSS
Mm9
BAMCTSS
[{{{mm9bam}}} download][{{{mm9ctss}}} donwload]
Mm10
BAMCTSS
[{{{mm10bam}}} download][{{{mm10ctss}}} donwload]


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

CNhs13511

MCL coexpression id Coexpression dpi cluster scores median value
0 0
1 0
10 0
100 0
1000 --0.0355
1001 --0.0299
1002 --0.116
1003 --0.156
1004 0
1005 0
1006 --0.163
1007 --0.036
1008 0
1009 --0.19
101 0.238
1010 0
1011 0.126
1012 0.126
1013 --0.0562
1014 --0.0874
1015 --0.0796
1016 --0.594
1017 0
1018 0
1019 0
102 0.64
1020 0
1021 0.021
1022 --0.275
1023 0.126
1024 --0.14
1025 --0.0611
1026 0
1027 --0.048
1028 0
1029 --0.051
103 --0.0887
1030 0
1031 -1.034
1032 --0.655
1033 0.459
1034 0
1035 0
1036 0.424
1037 0
1038 --0.172
1039 --0.309
104 0
1040 --0.216
1041 0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data
no result for this sample


TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs13511

Jaspar motif P-value
MA0002.2 4.08878e-5
MA0003.1 0.245
MA0004.1 0.0544
MA0006.1 0.483
MA0007.1 0.379
MA0009.1 0.722
MA0014.1 0.504
MA0017.1 0.619
MA0018.2 1.35058e-6
MA0019.1 0.774
MA0024.1 0.951
MA0025.1 0.217
MA0027.1 0.973
MA0028.1 3.39625e-5
MA0029.1 0.206
MA0030.1 0.0744
MA0031.1 0.00127
MA0035.2 0.829
MA0038.1 0.00198
MA0039.2 0.131
MA0040.1 0.269
MA0041.1 0.0977
MA0042.1 0.383
MA0043.1 0.0237
MA0046.1 2.42124e-11
MA0047.2 0.115
MA0048.1 0.418
MA0050.1 3.15153e-9
MA0051.1 3.54723e-6
MA0052.1 0.00527
MA0055.1 0.294
MA0057.1 0.945
MA0058.1 0.0287
MA0059.1 0.0215
MA0060.1 0.00925
MA0061.1 2.66576e-6
MA0062.2 3.29484e-19
MA0065.2 0.708
MA0066.1 0.15
MA0067.1 0.0114
MA0068.1 0.196
MA0069.1 0.884
MA0070.1 0.706
MA0071.1 0.972
MA0072.1 0.0614
MA0073.1 0.956
MA0074.1 0.579
MA0076.1 2.24672e-6
MA0077.1 0.122
MA0078.1 0.82
MA0079.2 0.0503
MA0080.2 5.55285e-14
MA0081.1 0.00336
MA0083.1 0.121
MA0084.1 0.962
MA0087.1 0.878
MA0088.1 0.609
MA0090.1 0.0221
MA0091.1 0.869
MA0092.1 0.762
MA0093.1 0.0628
MA0099.2 0.938
MA0100.1 0.124
MA0101.1 1.3603e-6
MA0102.2 0.799
MA0103.1 0.179
MA0104.2 0.0483
MA0105.1 3.23462e-6
MA0106.1 0.528
MA0107.1 8.26197e-7
MA0108.2 0.00275
MA0111.1 0.433
MA0112.2 0.385
MA0113.1 0.399
MA0114.1 0.0497
MA0115.1 0.312
MA0116.1 0.114
MA0117.1 0.107
MA0119.1 0.187
MA0122.1 0.416
MA0124.1 0.495
MA0125.1 0.131
MA0131.1 0.389
MA0135.1 0.827
MA0136.1 1.07412e-26
MA0137.2 0.0159
MA0138.2 7.32612e-4
MA0139.1 0.882
MA0140.1 0.857
MA0141.1 0.535
MA0142.1 0.0875
MA0143.1 0.429
MA0144.1 0.119
MA0145.1 0.0981
MA0146.1 0.557
MA0147.1 0.0199
MA0148.1 0.167
MA0149.1 0.127
MA0150.1 0.595
MA0152.1 0.542
MA0153.1 4.10783e-6
MA0154.1 0.608
MA0155.1 0.372
MA0156.1 1.56024e-28
MA0157.1 0.00148
MA0159.1 0.36
MA0160.1 0.996
MA0162.1 0.73
MA0163.1 0.0107
MA0164.1 0.346
MA0258.1 0.0955
MA0259.1 0.188



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs13511

Novel motif P-value
1 0.465
10 0.0326
100 0.498
101 0.969
102 0.431
103 0.552
104 0.932
105 0.696
106 0.715
107 0.323
108 0.852
109 0.506
11 0.47
110 0.138
111 0.205
112 0.113
113 0.34
114 0.382
115 0.826
116 0.637
117 2.10715e-4
118 0.0875
119 0.568
12 0.361
120 0.137
121 0.313
122 0.956
123 0.558
124 0.757
125 0.568
126 0.464
127 0.87
128 0.42
129 0.377
13 0.106
130 0.867
131 0.357
132 0.997
133 0.673
134 0.853
135 0.817
136 0.473
137 0.25
138 0.385
139 0.437
14 0.512
140 0.309
141 0.23
142 0.246
143 5.31175e-4
144 0.429
145 0.137
146 0.918
147 0.572
148 0.243
149 0.26
15 0.113
150 0.55
151 0.353
152 0.375
153 0.353
154 0.182
155 0.1
156 0.187
157 0.621
158 0.00902
159 0.732
160 0.401
161 0.105
162 0.186
163 0.549
164 0.0336
165 0.928
166 0.358
167 0.089
168 0.548
169 0.887
17 0.895
18 0.29
19 0.131
2 0.0258
20 0.0136
21 0.0509
22 0.722
23 0.792
24 0.413
25 0.168
26 0.292
27 0.74
28 0.258
29 0.0349
3 0.477
30 0.104
31 0.643
32 0.11
33 0.112
34 0.38
35 0.0317
36 0.068
37 0.189
38 0.7
39 0.463
4 0.772
40 0.413
41 0.203
42 0.293
43 0.644
44 0.37
45 0.3
46 0.56
47 0.819
48 0.487
49 0.211
5 0.158
50 0.448
51 0.75
52 0.172
53 0.679
54 0.623
55 0.923
56 0.936
57 0.807
58 0.301
59 0.558
6 0.793
60 0.885
61 0.149
62 0.0875
63 0.942
64 0.864
65 0.58
66 0.314
67 0.851
68 0.537
69 0.97
7 0.493
70 0.0275
71 0.11
72 0.736
73 0.252
74 0.807
75 0.00989
76 0.0207
77 0.0475
78 0.0337
79 0.829
8 0.548
80 0.191
81 0.905
82 0.224
83 0.15
84 0.944
85 0.864
86 0.118
87 0.808
88 0.386
89 0.74
9 0.939
90 0.0443
91 0.81
92 0.506
93 0.0418
94 0.491
95 0.279
96 0.34
97 0.488
98 0.523
99 0.0243



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs13511


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000034 (stem cell)
0002032 (hematopoietic oligopotent progenitor cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002420 (immature T cell)
0002419 (mature T cell)
0000790 (immature alpha-beta T cell)
0000838 (lymphoid lineage restricted progenitor cell)
0002031 (hematopoietic lineage restricted progenitor cell)
0000827 (pro-T cell)
0000037 (hematopoietic stem cell)
0000566 (angioblastic mesenchymal cell)
0000625 (CD8-positive, alpha-beta T cell)
0000837 (hematopoietic multipotent progenitor cell)
0000051 (common lymphoid progenitor)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
NA

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

NA