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FF:11856-125A2

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Name:Mouse CD19+ B Cells, donor1
Species:Mouse (Mus musculus)
Library ID:{{{library_id}}}
Sample type:{{{sample_category}}}
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainC57BL_6
tissuespleen
dev stageNA
sexNA
ageNA
cell typeb cell, CD19+
cell lineNA
companyNA
collaborationKawamoto (RCAI)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
Download raw sequence, BAM & CTSS
Mm9
BAMCTSS
[{{{mm9bam}}} download][{{{mm9ctss}}} donwload]
Mm10
BAMCTSS
[{{{mm10bam}}} download][{{{mm10ctss}}} donwload]





Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

CNhs13531

MCL coexpression id Coexpression dpi cluster scores median value
0 0
1 0
10 0
100 0
1000 --0.0355
1001 --0.0749
1002 --0.116
1003 --0.175
1004 0
1005 0.0674
1006 --0.272
1007 0.0648
1008 0
1009 --0.19
101 0.205
1010 0
1011 0.0626
1012 0
1013 --0.129
1014 --0.0874
1015 --0.119
1016 --0.594
1017 0
1018 0
1019 0
102 0.337
1020 0
1021 0.177
1022 --0.208
1023 0.177
1024 --0.14
1025 --0.0611
1026 0
1027 --0.048
1028 0
1029 --0.0935
103 --0.0887
1030 0.566
1031 --0.911
1032 --0.728
1033 0.236
1034 0
1035 0
1036 0.366
1037 0
1038 --0.265
1039 --0.0984
104 0
1040 --0.216
1041 0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data
no result for this sample


TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs13531

Jaspar motif P-value
MA0002.2 0.00118
MA0003.1 0.157
MA0004.1 0.0329
MA0006.1 0.705
MA0007.1 0.816
MA0009.1 0.592
MA0014.1 0.741
MA0017.1 0.986
MA0018.2 1.80196e-7
MA0019.1 0.173
MA0024.1 0.566
MA0025.1 0.845
MA0027.1 0.728
MA0028.1 3.42404e-6
MA0029.1 0.132
MA0030.1 0.675
MA0031.1 0.351
MA0035.2 0.552
MA0038.1 0.0618
MA0039.2 0.734
MA0040.1 0.529
MA0041.1 0.0847
MA0042.1 0.505
MA0043.1 0.0187
MA0046.1 1.83514e-12
MA0047.2 0.979
MA0048.1 0.377
MA0050.1 1.80868e-14
MA0051.1 9.7858e-8
MA0052.1 0.574
MA0055.1 0.201
MA0057.1 0.868
MA0058.1 0.00467
MA0059.1 0.00826
MA0060.1 0.108
MA0061.1 2.79301e-8
MA0062.2 1.92873e-17
MA0065.2 0.573
MA0066.1 0.128
MA0067.1 0.00277
MA0068.1 0.0114
MA0069.1 0.636
MA0070.1 0.482
MA0071.1 0.413
MA0072.1 0.192
MA0073.1 0.616
MA0074.1 0.7
MA0076.1 6.67479e-7
MA0077.1 0.339
MA0078.1 0.674
MA0079.2 0.0906
MA0080.2 1.40898e-12
MA0081.1 3.21903e-4
MA0083.1 0.0503
MA0084.1 0.939
MA0087.1 0.857
MA0088.1 0.999
MA0090.1 0.00759
MA0091.1 0.537
MA0092.1 0.567
MA0093.1 0.0256
MA0099.2 0.707
MA0100.1 0.193
MA0101.1 9.86383e-10
MA0102.2 0.834
MA0103.1 0.203
MA0104.2 0.0461
MA0105.1 3.85152e-8
MA0106.1 0.906
MA0107.1 1.34653e-9
MA0108.2 7.60855e-4
MA0111.1 0.755
MA0112.2 0.226
MA0113.1 0.441
MA0114.1 0.173
MA0115.1 0.51
MA0116.1 0.0185
MA0117.1 0.102
MA0119.1 0.171
MA0122.1 0.913
MA0124.1 0.816
MA0125.1 0.0357
MA0131.1 0.239
MA0135.1 0.72
MA0136.1 3.19318e-22
MA0137.2 0.474
MA0138.2 0.0203
MA0139.1 0.853
MA0140.1 0.803
MA0141.1 0.847
MA0142.1 2.82262e-4
MA0143.1 0.136
MA0144.1 0.818
MA0145.1 0.19
MA0146.1 0.318
MA0147.1 0.0372
MA0148.1 0.928
MA0149.1 0.115
MA0150.1 0.408
MA0152.1 0.908
MA0153.1 9.51782e-9
MA0154.1 0.0258
MA0155.1 0.466
MA0156.1 1.64819e-21
MA0157.1 0.153
MA0159.1 0.0388
MA0160.1 0.808
MA0162.1 0.976
MA0163.1 0.00336
MA0164.1 0.472
MA0258.1 0.144
MA0259.1 0.28



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs13531

Novel motif P-value
1 0.392
10 0.0387
100 0.607
101 0.625
102 0.554
103 0.278
104 0.77
105 0.565
106 0.563
107 0.103
108 0.595
109 0.351
11 0.437
110 0.176
111 0.18
112 0.0732
113 0.782
114 0.431
115 0.354
116 0.374
117 2.30193e-4
118 0.1
119 0.472
12 0.48
120 0.292
121 0.417
122 0.945
123 0.199
124 0.623
125 0.149
126 0.267
127 0.7
128 0.365
129 0.304
13 0.0448
130 0.986
131 0.274
132 0.454
133 0.802
134 0.779
135 0.524
136 0.858
137 0.0368
138 0.757
139 0.359
14 0.755
140 0.865
141 0.283
142 0.394
143 0.0371
144 0.476
145 0.259
146 0.727
147 0.823
148 0.106
149 0.364
15 0.184
150 0.455
151 0.32
152 0.506
153 0.287
154 0.22
155 0.301
156 0.678
157 0.705
158 0.0137
159 0.818
160 0.503
161 0.153
162 0.0718
163 0.083
164 0.12
165 0.34
166 0.56
167 0.0886
168 0.739
169 0.382
17 0.716
18 0.28
19 0.67
2 0.0307
20 0.00531
21 0.351
22 0.965
23 0.622
24 0.67
25 0.284
26 0.08
27 0.474
28 0.211
29 0.0431
3 0.184
30 0.126
31 0.541
32 0.351
33 0.105
34 0.403
35 0.159
36 0.0583
37 0.0698
38 0.776
39 0.383
4 0.984
40 0.187
41 0.175
42 0.311
43 0.35
44 0.304
45 0.386
46 0.469
47 0.76
48 0.418
49 0.169
5 0.249
50 0.582
51 0.778
52 0.27
53 0.387
54 0.626
55 0.738
56 0.908
57 0.81
58 0.193
59 0.681
6 0.633
60 0.818
61 0.107
62 0.0812
63 0.906
64 0.983
65 0.771
66 0.59
67 0.822
68 0.0155
69 0.646
7 0.422
70 0.0283
71 0.0606
72 0.354
73 0.087
74 0.747
75 0.00384
76 0.00325
77 0.078
78 0.0706
79 0.515
8 0.426
80 0.0766
81 0.761
82 0.43
83 0.0771
84 0.711
85 0.901
86 0.147
87 0.519
88 0.493
89 0.617
9 0.992
90 0.0142
91 0.958
92 0.358
93 0.0622
94 0.301
95 0.142
96 0.322
97 0.732
98 0.494
99 0.0539



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs13531


FANTOM5 (FF) ontology


Direct parent terms

is_a relathionship
{{{is_a}}}

part_of relathionship
{{{part_of}}}

has_quality relathionship
{{{has_quality}}}

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000034 (stem cell)
0000037 (hematopoietic stem cell)
0000048 (multi fate stem cell)
0000051 (common lymphoid progenitor)
0000134 (mesenchymal cell)
0000219 (motile cell)
0000236 (B cell)
0000255 (eukaryotic cell)
0000542 (lymphocyte)
0000548 (animal cell)
0000566 (angioblastic mesenchymal cell)
0000723 (somatic stem cell)
0000738 (leukocyte)
0000826 (pro-B cell)
0000837 (hematopoietic multipotent progenitor cell)
0000838 (lymphoid lineage restricted progenitor cell)
0000945 (lymphocyte of B lineage)
0000988 (hematopoietic cell)
0002031 (hematopoietic lineage restricted progenitor cell)
0002032 (hematopoietic oligopotent progenitor cell)
0002087 (nongranular leukocyte)
0002320 (connective tissue cell)
0002371 (somatic cell)

UBERON: Anatomy
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000479 (tissue)
0001062 (anatomical entity)
0002384 (connective tissue)

FF: FANTOM5
NA

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

NA