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(Created page with "{{f5samples |id=FF:11873-125C1 |name=CD14+ monocytes - mock treated, donor2 |sample_id=11873 |rna_tube_id= |rna_box=125 |rna_position=C1 |sample_cell_lot= |sample_cell...")
 
 
(29 intermediate revisions by the same user not shown)
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{{f5samples
 
{{f5samples
|id=FF:11873-125C1
+
|DRA_sample_Accession=CAGE@SAMD00005767
|name=CD14+ monocytes - mock treated, donor2
+
|accession_numbers=CAGE;DRX008133;DRR009005;DRZ000430;DRZ001815;DRZ011780;DRZ013165
|sample_id=11873
+
|ancestors_in_anatomy_facet=
|rna_tube_id=
+
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
|rna_box=125
 
|rna_position=C1
 
|sample_cell_lot=
 
|sample_cell_catalog=
 
|sample_company=
 
|rna_lot_number=D4-4
 
|rna_catalog_number=
 
|sample_species=Human (Homo sapiens)
 
|sample_strain=
 
|sample_dev_stage=
 
|sample_tissue=
 
|sample_donor(cell lot)=donor2
 
|sample_sex=male
 
|sample_age=51
 
|sample_ethnicity=
 
|rna_rin=9.10000
 
|rna_od260/230=1.73000
 
|rna_od260/280=2.00000
 
|sample_cell_type=monocyte
 
|sample_cell_line=
 
|sample_collaboration=Christine Wells (University of Queensland)
 
|sample_experimental_condition=
 
|sample_disease=
 
|rna_sample_type=total RNA
 
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
 
|rna_weight_ug=3.03251
 
|rna_concentration=0.67389
 
|sample_note=
 
|profile_hcage=CNhs13484,,,SEQUENCING QUEUE
 
|profile_cagescan=,,,
 
|profile_srnaseq=,,,
 
|profile_rnaseq=,,,
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000037,CL:0000040,CL:0000048,CL:0000049,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000557,CL:0000559,CL:0000566,CL:0000576,CL:0000723,CL:0000738,CL:0000763,CL:0000766,CL:0000837,CL:0000839,CL:0000860,CL:0000988,CL:0001012,CL:0002009,CL:0002031,CL:0002032,CL:0002057,CL:0002087,CL:0002194,CL:0002320,CL:0002371
 
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001062,UBERON:0001434,UBERON:0001474,UBERON:0002050,UBERON:0002193,UBERON:0002204,UBERON:0002371,UBERON:0002384,UBERON:0002390,UBERON:0002405,UBERON:0002532,UBERON:0004120,UBERON:0004765,UBERON:0005423
 
 
|ancestors_in_disease_facet=
 
|ancestors_in_disease_facet=
|sample_description=
+
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000343,FF:0000350,FF:0011101
 
+
|comment=
 +
|created_by=
 +
|creation_date=
 +
|data_phase=2
 +
|datafreeze_phase=2
 +
|def=
 +
|expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.72!528.27!SPI1;;chr2:68592406..68592424,+!p1@PLEK!2.62!419.82!PLEK;;chr12:54778471..54778528,-!p1@ZNF385A!2.55!356.34!ZNF385A;;chr21:34442439..34442455,+!p1@OLIG1!2.39!245.24!OLIG1;;chr7:115670804..115670825,-!p1@TFEC!2.30!196.50!TFEC;;chr16:85932760..85932775,+!p1@IRF8!2.20!156.06!IRF8;;chr11:47399947..47399961,-!p3@SPI1!2.06!112.61!SPI1;;chr1:25256756..25256774,-!p1@RUNX3!2.01!186.29!RUNX3;;chr11:47400062..47400077,-!p2@SPI1!1.98!94.09!SPI1;;chr11:47399996..47400014,-!p4@SPI1!1.87!72.93!SPI1;;chr19:50432132..50432217,+!p2@ATF5!1.80!73.31!ATF5;;chr11:47400032..47400043,-!p5@SPI1!1.79!60.08!SPI1;;chr20:39317868..39317884,-!p1@MAFB!1.78!661.28!MAFB;;chr6:106534192..106534224,+!p1@PRDM1!1.76!154.17!PRDM1;;chr19:33793430..33793447,-!p1@CEBPA!1.72!208.97!CEBPA;;chr12:54778351..54778378,-!p6@ZNF385A!1.72!51.77!ZNF385A;;chr21:34398234..34398250,+!p1@OLIG2!1.71!50.26!OLIG2;;chr2:145277640..145277771,-!p1@ZEB2!1.63!532.81!ZEB2;;chr7:128577972..128578047,+!p1@IRF5!1.61!61.22!IRF5;;chr21:34442540..34442560,+!p2@OLIG1!1.61!40.05!OLIG1;;chr6:106534230..106534254,+!p2@PRDM1!1.54!82.38!PRDM1;;chr10:31288398..31288455,-!p2@ZNF438!1.54!39.30!ZNF438;;chr21:30671690..30671762,+!p2@BACH1!1.53!108.45!BACH1;;chr21:36260295..36260310,-!p3@RUNX1!1.51!49.50!RUNX1;;chr7:50344289..50344323,+!p1@IKZF1!1.49!30.23!IKZF1;;chr11:47400045..47400060,-!p6@SPI1!1.49!29.85!SPI1;;chr2:70142232..70142251,+!p1@MXD1!1.48!157.95!MXD1;;chr1:25256439..25256476,-!p3@RUNX3!1.48!29.47!RUNX3;;chr10:31288370..31288393,-!p3@ZNF438!1.48!29.10!ZNF438;;chr10:64576105..64576133,-!p1@EGR2!1.45!55.17!EGR2;;chr10:51572408..51572454,+!p3@NCOA4!1.43!144.73!NCOA4;;chr6:144385698..144385742,-!p2@PLAGL1!1.42!30.23!PLAGL1;;chr19:13213662..13213686,-!p1@LYL1!1.41!36.28!LYL1;;chr20:48599506..48599526,+!p1@SNAI1!1.35!134.52!SNAI1;;chr6:15246200..15246214,+!p2@JARID2!1.35!57.82!JARID2;;chr19:45251395..45251432,+!p8@BCL3!1.35!21.16!BCL3;;chr13:41593425..41593480,-!p1@ELF1!1.34!128.10!ELF1;;chr3:12329397..12329433,+!p2@PPARG!1.34!46.86!PPARG;;chr12:48298765..48298783,-!p2@VDR!1.34!42.70!VDR;;chrX:129244454..129244488,-!p1@ELF4!1.33!143.21!ELF4;;chr2:145275162..145275202,-!p2@ZEB2!1.33!116.76!ZEB2;;chr16:31885093..31885165,+!p1@ZNF267!1.30!281.14!ZNF267;;chr12:96588279..96588299,+!p4@ELK3!1.29!85.02!ELK3;;chr19:19496539..19496576,+!p8@GATAD2A!1.29!32.50!GATAD2A;;chr11:47399920..47399931,-!p7@SPI1!1.29!18.52!SPI1;;chr21:30671235..30671253,+!p1@BACH1!1.28!225.21!BACH1;;chr10:35484053..35484076,+!p1@CREM!1.28!44.21!CREM;;chr12:96588219..96588263,+!p2@ELK3!1.26!120.54!ELK3;;chr2:238600933..238600985,+!p3@LRRFIP1!1.26!91.82!LRRFIP1;;chr12:48298785..48298828,-!p1@VDR!1.26!88.80!VDR;;chrX:129244430..129244442,-!p5@ELF4!1.26!17.38!ELF4;;chr6:391743..391759,+!p1@IRF4!1.25!16.63!IRF4;;chr10:51572339..51572376,+!p4@NCOA4!1.24!36.65!NCOA4;;chr6:44233252..44233296,-!p1@NFKBIE!1.23!154.93!NFKBIE;;chr19:45971246..45971265,+!p1@FOSB!1.22!287.19!FOSB;;chr2:145277882..145277967,-!p3@ZEB2!1.20!25.70!ZEB2;;chr17:38497662..38497713,+!p4@RARA!1.20!17.38!RARA;;chr20:48807351..48807384,+!p1@CEBPB!1.19!1466.54!CEBPB;;chr5:88178983..88179012,-!p1@MEF2C!1.19!110.72!MEF2C;;chr18:3449720..3449749,+!p2@TGIF1!1.19!30.61!TGIF1;;chr2:68592394..68592405,+!p2@PLEK!1.19!14.36!PLEK;;chr4:106068026..106068084,+!p1@TET2!1.18!125.08!TET2;;chr12:96588368..96588394,+!p3@ELK3!1.18!38.17!ELK3;;chr2:238600998..238601013,+!p5@LRRFIP1!1.16!13.60!LRRFIP1;;chr21:30672433..30672464,+!p6@BACH1!1.16!13.60!BACH1;;chr12:11802753..11802834,+!p2@ETV6!1.15!63.48!ETV6;;chr21:36421535..36421610,-!p2@RUNX1!1.15!47.23!RUNX1;;chr9:117150254..117150271,-!p1@AKNA!1.15!35.90!AKNA;;chr12:72056749..72056767,+!p6@THAP2!1.15!14.74!THAP2;;chr7:149470641..149470694,-!p1@ZNF467!1.14!57.44!ZNF467;;chr18:3449618..3449634,+!p13@TGIF1!1.14!15.87!TGIF1;;chr14:35872453..35872485,-!p2@NFKBIA!1.13!30.99!NFKBIA;;chr2:70314240..70314256,+!p4@PCBP1!1.10!24.18!PCBP1;;chr12:54694758..54694805,-!p1@NFE2!1.10!13.98!NFE2;;chr1:25291620..25291635,-!p4@RUNX3!1.10!11.71!RUNX3;;chr1:156470515..156470542,-!p2@MEF2D!1.08!58.19!MEF2D;;chr9:88969287..88969297,-!p3@ZCCHC6!1.08!14.74!ZCCHC6;;chr7:17338266..17338282,+!p1@AHR!1.07!117.14!AHR;;chr2:185463247..185463263,+!p1@ZNF804A!1.07!19.27!ZNF804A;;chr12:54785074..54785122,-!p2@ZNF385A!1.07!16.63!ZNF385A;;chr9:129567282..129567353,+!p1@ZBTB43!1.06!139.06!ZBTB43;;chr2:97202480..97202499,+!p1@ARID5A!1.06!106.94!ARID5A;;chr12:124873852..124873881,-!p3@NCOR2!1.06!64.24!NCOR2;;chr19:45250948..45250998,+!p3@BCL3!1.06!26.83!BCL3;;chr6:106535598..106535637,+!p7@PRDM1!1.06!10.58!PRDM1;;chr19:13213954..13214021,-!p4@LYL1!1.06!10.58!LYL1;;chr9:88969303..88969335,-!p1@ZCCHC6!1.05!95.98!ZCCHC6;;chr19:19496624..19496660,+!p3@GATAD2A!1.05!47.61!GATAD2A;;chr7:50343634..50343717,+!p2@IKZF1!1.05!10.20!IKZF1;;chr13:41593392..41593403,-!p7@ELF1!1.05!10.20!ELF1;;chr2:28618532..28618610,+!p4@FOSL2!1.04!17.38!FOSL2;;chr1:212782094..212782109,+!p1@ATF3!1.03!269.43!ATF3;;chr3:170075436..170075520,+!p1@SKIL!1.03!213.88!SKIL;;chr4:103422499..103422632,+!p1@NFKB1!1.03!204.05!NFKB1;;chr2:61108695..61108753,+!p1@REL!1.03!68.40!REL;;chr19:42636586..42636607,-!p1@POU2F2!1.03!27.58!POU2F2;;chr15:90544532..90544563,+!p1@ZNF710!1.03!19.65!ZNF710;;chr10:64018918..64018936,+!p2@ZNF365!1.03!9.82!ZNF365;;chrX:153305787..153305807,-!p3@MECP2!1.02!9.45!MECP2;;chr1:157108130..157108173,-!p1@ETV3!1.01!68.40!ETV3;;chr9:102584159..102584174,+!p2@NR4A3!1.00!16.63!NR4A3;;chr18:3449586..3449617,+!p8@TGIF1!1.00!14.74!TGIF1;;chr18:3449695..3449712,+!p9@TGIF1!1.00!13.98!TGIF1;;chr7:137620684..137620711,-!p4@CREB3L2!1.00!9.07!CREB3L2;;chr2:145277589..145277612,-!p12@ZEB2!0.99!8.69!ZEB2;;chr6:15246261..15246312,+!p1@JARID2!0.98!211.99!JARID2;;chr2:231280954..231280965,+!p2@SP100!0.98!15.87!SP100;;chr1:156470494..156470505,-!p3@MEF2D!0.98!12.47!MEF2D;;chr12:72056773..72056796,+!p3@THAP2!0.98!11.34!THAP2;;chr17:38474489..38474548,+!p1@RARA!0.97!270.94!RARA;;chr11:615942..615957,-!p1@IRF7!0.97!81.24!IRF7;;chr10:94449703..94449718,+!p1@HHEX!0.97!32.88!HHEX;;chr19:45252008..45252024,+!p2@BCL3!0.97!28.34!BCL3;;chr19:36391434..36391450,-!p1@NFKBID!0.97!16.63!NFKBID;;chr10:135044190..135044229,+!p3@UTF1!0.97!8.31!UTF1;;chr8:116681123..116681143,-!p4@TRPS1!0.96!15.87!TRPS1;;chr8:71316428..71316459,-!p2@NCOA2!0.96!13.98!NCOA2;;chr7:17338324..17338341,+!p3@AHR!0.95!27.21!AHR;;chr14:64971014..64971044,+!p4@ZBTB1!0.95!13.23!ZBTB1;;chr5:88179195..88179224,-!p3@MEF2C!0.95!12.85!MEF2C;;chr21:36260343..36260402,-!p6@RUNX1!0.95!12.85!RUNX1;;chr4:185395633..185395651,-!p2@IRF2!0.94!12.47!IRF2;;chr19:50432104..50432126,+!p6@ATF5!0.93!7.56!ATF5;;chr8:53373491..53373506,-!p4@ST18!0.93!7.56!ST18;;chr2:28615716..28615733,+!p1@FOSL2!0.92!364.65!FOSL2;;chr17:40440481..40440550,+!p1@STAT5A!0.92!54.41!STAT5A;;chr14:35873947..35873965,-!p1@NFKBIA!0.91!476.88!NFKBIA;;chr10:104155480..104155534,+!p2@NFKB2!0.90!47.61!NFKB2;;chr12:54785054..54785072,-!p4@ZNF385A!0.90!7.94!ZNF385A;;chr7:150974206..150974255,-!p1@SMARCD3!0.89!43.83!SMARCD3;;chr1:158979872..158979898,+!p3@IFI16!0.89!21.54!IFI16;;chr2:74730430..74730451,-!p1@LBX2!0.89!11.34!LBX2;;chr3:12330560..12330579,+!p1@PPARG!0.89!7.94!PPARG;;chr16:88752861..88752884,-!p2@SNAI3!0.89!6.80!SNAI3;;chr1:25291648..25291665,-!p7@RUNX3!0.89!6.80!RUNX3;;chr7:115670792..115670797,-!p2@TFEC!0.89!6.80!TFEC;;chr21:36260980..36261011,-!p1@RUNX1!0.88!201.41!RUNX1;;chr1:158979792..158979814,+!p2@IFI16!0.88!66.88!IFI16;;chr10:104154246..104154347,+!p3@NFKB2!0.88!42.70!NFKB2;;chr18:3449527..3449582,+!p6@TGIF1!0.88!12.85!TGIF1;;chr13:41635029..41635044,-!p4@ELF1!0.87!13.98!ELF1;;chr20:48807456..48807475,+!p3@CEBPB!0.87!12.85!CEBPB;;chr5:142782823..142782854,-!p3@NR3C1!0.87!9.45!NR3C1;;chr6:15246741..15246765,+!p9@JARID2!0.87!6.42!JARID2;;chr2:231090433..231090469,+!p1@SP140!0.87!6.42!SP140;;chrX:106960285..106960299,-!p1@TSC22D3!0.86!176.85!TSC22D3;;chr15:31619013..31619095,+!p1@KLF13!0.86!153.80!KLF13;;chr9:110252035..110252057,-!p1@KLF4!0.85!104.67!KLF4;;chrX:106960180..106960197,-!p2@TSC22D3!0.85!24.56!TSC22D3;;chr21:36259445..36259519,-!p4@RUNX1!0.85!17.76!RUNX1;;chr16:3313791..3313834,+!p2@ZNF263!0.85!13.98!ZNF263;;chr14:75988771..75988826,+!p1@BATF!0.85!8.31!BATF;;chr15:90544182..90544195,+!p7@ZNF710!0.85!6.05!ZNF710;;chr5:71803177..71803255,-!p1@ZNF366!0.85!6.05!ZNF366;;chr7:28725740..28725778,+!p1@CREB5!0.84!55.93!CREB5;;chr7:99156434..99156510,+!p2@ZNF655!0.84!38.17!ZNF655;;chr1:158979851..158979865,+!p5@IFI16!0.84!13.60!IFI16;;chr18:3448455..3448480,+!p5@TGIF1!0.84!11.34!TGIF1;;chr6:20403916..20403965,+!p3@E2F3!0.83!27.58!E2F3;;chr2:208394817..208394834,+!p3@CREB1!0.83!24.94!CREB1;;chr14:35872962..35873025,-!p3@NFKBIA!0.83!15.49!NFKBIA;;chr17:79881332..79881348,-!p3@MAFG!0.83!8.69!MAFG;;chr12:72056800..72056834,+!p1@THAP2!0.83!7.94!THAP2;;chr19:13213704..13213726,-!p3@LYL1!0.82!7.56!LYL1;;chr6:34204973..34204990,+!p4@HMGA1!0.81!79.35!HMGA1;;chr10:3827371..3827386,-!p2@KLF6!0.81!49.50!KLF6;;chr19:4067039..4067064,-!p3@ZBTB7A!0.81!17.00!ZBTB7A;;chr19:19496577..19496619,+!p5@GATAD2A!0.80!19.27!GATAD2A;;chr14:103059006..103059017,+!p2@RCOR1!0.80!8.69!RCOR1;;chr20:48807648..48807671,+!p9@CEBPB!0.80!7.94!CEBPB;;chr9:110250697..110250738,-!p2@KLF4!0.80!6.42!KLF4;;chr7:137620650..137620677,-!p3@CREB3L2!0.80!5.29!CREB3L2;;chr1:25291475..25291511,-!p2@RUNX3!0.80!5.29!RUNX3;;chr3:12329464..12329472,+!p6@PPARG!0.80!5.29!PPARG;;chr6:7107939..7107993,+!p1@RREB1!0.79!65.75!RREB1;;chr9:88969339..88969422,-!p2@ZCCHC6!0.79!43.83!ZCCHC6;;chr7:17338239..17338262,+!p2@AHR!0.79!41.57!AHR;;chr19:6110474..6110551,-!p1@RFX2!0.79!34.01!RFX2;;chr14:74226747..74226779,-!p3@C14orf43!0.79!30.99!C14orf43;;chr17:38498594..38498661,+!p2@RARA!0.79!18.52!RARA;;chr14:65569101..65569119,-!p3@MAX!0.79!17.76!MAX;;chr16:88752889..88752921,-!p1@SNAI3!0.79!6.05!SNAI3;;chr8:116681194..116681214,-!p1@TRPS1!0.78!51.77!TRPS1;;chr3:39195037..39195069,-!p2@CSRNP1!0.78!33.63!CSRNP1;;chr9:117160738..117160782,-!p2@AKNA!0.78!22.29!AKNA;;chr9:1372179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 +
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
 +
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 
|fonse_cell_line=
 
|fonse_cell_line=
 
|fonse_cell_line_closure=
 
|fonse_cell_line_closure=
Line 67: Line 41:
 
|fonse_treatment=FF:0000343,FF:0011101,FF:11873-125C1
 
|fonse_treatment=FF:0000343,FF:0011101,FF:11873-125C1
 
|fonse_treatment_closure=FF:0000343,FF:0011101,FF:11873-125C1
 
|fonse_treatment_closure=FF:0000343,FF:0011101,FF:11873-125C1
 +
|has_quality=
 +
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor2.CNhs13484.11873-125C1.hg19.nobarcode.bam
 +
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor2.CNhs13484.11873-125C1.hg19.ctss.bed.gz
 +
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor2.CNhs13484.11873-125C1.hg19.nobarcode.rdna.fa.gz
 +
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor2.CNhs13484.11873-125C1.hg38.nobarcode.bam
 +
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor2.CNhs13484.11873-125C1.hg38.nobarcode.ctss.bed.gz
 +
|id=FF:11873-125C1
 +
|is_a=EFO:0002091;;FF:0011101
 +
|is_obsolete=
 +
|library_id=CNhs13484
 +
|library_id_phase_based=2:CNhs13484
 +
|microRNAs=
 +
|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11873
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11873
 +
|name=CD14+ monocytes - mock treated, donor2
 +
|namespace=
 +
|part_of=
 +
|profile_cagescan=,,,
 +
|profile_hcage=CNhs13484,LSID1025,release012,COMPLETED
 +
|profile_rnaseq=
 +
|profile_srnaseq=,,,
 +
|refex=http://refex.dbcls.jp/genelist.php?lang
 +
|repeat_enrich_byfamily=0,0,0.30227542378099,0,0,0.139210117864267,0,0.0841451138549895,0.244463143941376,0.327188715368467,0.378664592459364,0,0.139210117864267,0,0,0,0,0,0,0,0,0.460804619998697,0,0,-0.0141128924841607,0,0,0,0,0,-0.0979578962680575,0,0,0.579409834278277,0,0,0,0,0,0,0,0.139210117864267,0,0,0,0,0.0459369139368083,0.139210117864267,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.139210117864267,0,-0.0543956416944428,0.139210117864267,-0.0969923612426051,0,0,0.04186649065117,0,0.191836630902821,0,0,0,0,0.244463143941376,0,0,0,0.139210117864267,0,0,0.399933835234624,0,0,0,0.0412265818466518,0.0696050589321335,0,0,0.0732787646154511,0,0,-0.469838569959861,0.0696050589321335,0,0,0.0807632910524417,-0.141592343763735,0,0,0.515701546529575,0,0.0411747666265605,0.183292734908616,0,0,0,0,0,0.164559333830539,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.061281174599638,-0.0613827280997528,0,0,0.0756131786089532,0,0,0
 +
|repeat_enrich_byname=0,0,0,0.244463143941376,0.0411747666265605,0,0,0,0.139210117864267,0.139210117864267,0.139210117864267,0,0,0,0,0,-0.107968757421298,0,0.0400969005135353,0.370667976742072,0,0,-0.227312169292259,0,0.139210117864267,0,0,0.139210117864267,0,0.139210117864267,0.139210117864267,0,-0.128119866952565,0.139210117864267,-0.0504125515893149,0,0,0,0,0,0.607262114719443,0.139210117864267,-0.00969872731897085,-0.0683442610773682,0,0,0,0,-0.270240669334324,0,0.0183306340705263,-0.0827201683234173,-0.221611588102807,-0.497036978374682,0.083497621083085,0,0,0,-0.459676036093492,-0.015391595664402,0,0,0.159076754719201,0.395186563675918,0,0,-0.391044581551635,0,0.525067019837792,-0.0238689746548435,0,0,0,0,0,0,0,0.139210117864267,0,0,0,0,0,0.0121115921106968,0.0729452385556552,0.139210117864267,0,0,0,-0.429555977378273,0,0,0.768094064722117,-0.348641937922154,0,0.240262784669511,0,0.826974842560849,0.0247628944837694,0.287374649641685,0.368093799642013,-0.147401849371139,-0.189981719549847,0.0939593146213043,-0.469838569959861,-0.272089509848468,-0.0180740654620479,-0.0147407669846611,-0.0302447930437535,0.434595439392232,-0.464898392842755,0,0,-0.0775089264793031,-0.304339167238732,0,0.0449202048441757,-0.350904596612507,0.0296245101994781,-0.331329852148738,0.364843237290362,-0.481623158375097,0.0066757289995556,-0.0395325284566706,-0.318226335032328,-0.015120573162964,-0.351967265971566,0,0.643539871419022,0.0939813414420616,0.110952200825306,0.0127567114655456,1.00936768337115,-0.0428704595696984,0.386654127491264,0.0708658567868987,0,-0.0423660572964085,-0.200006933368877,0,0,-0.0170640179292608,0,0,0,0,0,-0.734228426165494,-0.139558307795542,0.227949058443152,0,0.0157360911780334,0,0.00498934342840407,0,-0.0721818003071476,0.0984532464839814,0.0310445152997854,-0.153423686731969,0,-0.264780643071708,-0.235857248949416,0.0811450355922021,-0.422394805391737,0.0807632910524417,0.753462141246708,-0.0648407803313041,-0.00852357234834455,-0.0171769916992481,-0.275752932992257,-0.0881268324752877,0,-0.204229581864431,0.917575285989846,0.0509668385341655,-0.418970570399033,0,-0.0746614595998887,0,0.276268813669092,0,-0.167599706609731,0.021279461468911,0.240025794073262,0.370339998428297,0,-0.60012653415068,-0.788130937773974,0,0,0.0142042176729584,0,-0.150367083334639,-0.697695966512583,0.290591913533713,-0.138989456679195,0,-0.790080158389657,0,0,-0.276877949958438,0.00898710617698686,0,0.188479112179589,0.189465904359472,0.138863239205704,0.213147594226144,0,0,-0.645700337992725,0,0,-0.60592806381803,-0.0636048451378017,-0.619783323958633,0.351224506075225,0,0.121779500545093,0,0,-0.177527765965176,0,-0.00244594961886402,0,0.329118667661078,-0.0853219627682848,0,0,0.257091559632772,0,0,0,0.0802536068789108,0,0,0,0,0,0.188256056969193,-0.354833330216448,0.244463143941376,0.1009362878296,0,0,0,0,0,0.200769919077378,0,0,-1.59233083881968,-0.143749100680162,-0.12301741567642,0,0,0,0,-0.215723402553475,0.0412265818466518,0,0.00734741136663522,0,0,0,0,0.0530691280750556,0,0.139210117864267,0,0.139210117864267,0.081479660810603,0.333783221573011,0.139210117864267,0,0,0.366585469817231,0.244463143941376,0,0,0,0.393464793690004,0,0.0160536982786167,0.371057144342106,0,0.511564591839805,-0.0815818795468414,0,0.105984832990422,0.00664884605570437,-1.1704102227842,0,0,0.0677715358711902,0,0,0.0683431545667412,0.0299339719572695,0,0,0,0,0.164559333830539,0,0.0569335575986225,0.892192975194883,-0.214314512399756,0,0,0,0,0,1.60120382887204,0,0,0.139210117864267,0,0,0.254015199762345,-0.0922240566585104,0,0,0,0,0,0,0,0.245465953470543,-0.124367207665467,0,0,0,0,0,0,0,0,-0.071492104428618,0,0,0,0,0,-0.0969923612426051,0,0,0,0.604550847561981,0.512866040977352,0,0,0.327188715368467,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0158910318288192,0.330476326354429,0,0.139210117864267,0,0,0,0.244463143941376,0,-0.0303701542647149,0,0.244463143941376,0,0,1.92832144811202,0,0,0,0.0344137330751105,0,0.0841451138549895,0.139210117864267,0,0,0,0,0.139210117864267,0,0,0,0,0,0,0,0,0.164559333830539,0,0,0,0,0,0,-0.655863813051005,0,0,0,0,0,-0.232628352633041,0,0,0,0,0,0.122231571970688,0.0908911479421605,0,0,0,0,0,0,0.0696050589321335,0,0.0696050589321335,0.244463143941376,0,0,0.199966917617312,0,0,0,0,0,0,0,0,0,0.030486366122281,0.139210117864267,0.0696050589321335,0.00823713144721865,0,0,0,0,0,0,0,-0.0979578962680575,0,0,0.49109922045154,0,0,0,0,0,0,-0.0575745306573609,-0.213615340891014,-0.127786722100869,0,0,0,-0.054385572482455,0.139210117864267,0,-0.0820564584332857,0.139210117864267,-0.0667773874189013,0,0,0.399933835234624,0,0,0,0,0,0,0,0,0.0696050589321335,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244463143941376,0,0,0,0,-0.0141128924841607,0,0,0,0,0,0,0.0696050589321335,0,0,0,0,0.252785233669367,0.0696050589321335,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122231571970688,0,0.164559333830539,0,0,0,0.329118667661078,0.246845243195659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.319915366965986,0,0,0,0.348626983285107,0,0,0,0,0,0,0.139210117864267,0,0,0,0,0,0,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 +
|rna_box=125
 +
|rna_catalog_number=
 +
|rna_concentration=0.67389
 +
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
 +
|rna_lot_number=D4-4
 +
|rna_od260/230=1.73
 +
|rna_od260/280=2
 +
|rna_position=C1
 +
|rna_rin=9.1
 +
|rna_sample_type=total RNA
 +
|rna_tube_id=125C1
 +
|rna_weight_ug=3.032505
 +
|sample_age=51
 +
|sample_category=primary cells
 +
|sample_cell_catalog=
 +
|sample_cell_line=
 +
|sample_cell_lot=
 +
|sample_cell_type=monocyte
 +
|sample_collaboration=Christine Wells (University of Queensland)
 +
|sample_company=
 +
|sample_description=
 +
|sample_dev_stage=
 +
|sample_disease=
 +
|sample_donor(cell lot)=donor2
 +
|sample_ethnicity=
 +
|sample_experimental_condition=
 +
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.9826971375396e-250!GO:0005737;cytoplasm;3.97983679094491e-133!GO:0043227;membrane-bound organelle;2.3604842450808e-130!GO:0043231;intracellular membrane-bound organelle;5.90134248855424e-130!GO:0043226;organelle;1.10945698705546e-122!GO:0043229;intracellular organelle;8.85991556479576e-122!GO:0044444;cytoplasmic part;2.0866113378919e-87!GO:0044422;organelle part;3.18911640465869e-75!GO:0044446;intracellular organelle part;1.37800283988729e-73!GO:0044237;cellular metabolic process;7.25616778354739e-72!GO:0044238;primary metabolic process;1.75789888742342e-70!GO:0043170;macromolecule metabolic process;3.00740221659246e-70!GO:0005515;protein binding;2.29014344815133e-69!GO:0032991;macromolecular complex;2.15382743139155e-62!GO:0003723;RNA binding;2.8943717137997e-58!GO:0030529;ribonucleoprotein complex;1.07932680929835e-55!GO:0005634;nucleus;4.61813614898499e-55!GO:0044428;nuclear part;4.01254216932754e-51!GO:0019538;protein metabolic process;4.93994247511225e-49!GO:0044267;cellular protein metabolic process;7.93025519567913e-46!GO:0044260;cellular macromolecule metabolic process;1.61386309914715e-45!GO:0033036;macromolecule localization;3.59705077701982e-44!GO:0006412;translation;1.19786436161322e-43!GO:0015031;protein transport;5.64466110836187e-43!GO:0045184;establishment of protein localization;1.17068603752142e-42!GO:0043233;organelle lumen;1.10374285536859e-41!GO:0031974;membrane-enclosed lumen;1.10374285536859e-41!GO:0008104;protein localization;8.52001506588414e-41!GO:0043283;biopolymer metabolic process;2.75296768915075e-39!GO:0010467;gene expression;6.63958696440339e-39!GO:0005829;cytosol;2.12858571406099e-35!GO:0006396;RNA processing;1.46914459714135e-34!GO:0031090;organelle membrane;1.98680241975148e-34!GO:0016071;mRNA metabolic process;2.01124977406862e-33!GO:0009059;macromolecule biosynthetic process;4.25712579629212e-33!GO:0031981;nuclear lumen;1.72673898447202e-32!GO:0043234;protein complex;1.02480319074743e-30!GO:0044249;cellular biosynthetic process;1.9667590456749e-30!GO:0008380;RNA splicing;6.86256988028172e-30!GO:0005840;ribosome;6.86256988028172e-30!GO:0009058;biosynthetic process;8.03652901379773e-30!GO:0046907;intracellular transport;2.0993843575697e-29!GO:0006886;intracellular protein transport;3.19982657245285e-29!GO:0005739;mitochondrion;5.03380434739954e-29!GO:0016043;cellular component organization and biogenesis;5.81822700701939e-29!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.09315048912641e-28!GO:0006397;mRNA processing;1.19842225802631e-28!GO:0006915;apoptosis;4.59337818596193e-28!GO:0012501;programmed cell death;4.70347277685798e-28!GO:0003735;structural constituent of ribosome;4.45494897923232e-27!GO:0008219;cell death;1.07147814646169e-26!GO:0016265;death;1.07147814646169e-26!GO:0031967;organelle envelope;2.55055227932487e-25!GO:0031975;envelope;3.62911969741195e-25!GO:0033279;ribosomal subunit;4.2322357179073e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.75986370325496e-24!GO:0051649;establishment of cellular localization;8.72264478188243e-23!GO:0005654;nucleoplasm;1.70861001619611e-22!GO:0065003;macromolecular complex assembly;2.88443146294723e-22!GO:0051641;cellular localization;3.88429815287431e-22!GO:0044445;cytosolic part;1.11303558248963e-21!GO:0005681;spliceosome;2.90888076203599e-21!GO:0008134;transcription factor binding;7.01477681064739e-21!GO:0044429;mitochondrial part;1.22099510395857e-20!GO:0000166;nucleotide binding;2.17318613984415e-20!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.83445781984877e-20!GO:0044451;nucleoplasm part;5.04232648795731e-19!GO:0022607;cellular component assembly;1.75648004694431e-18!GO:0016192;vesicle-mediated transport;2.76991849051291e-18!GO:0042981;regulation of apoptosis;3.04431985569255e-18!GO:0043067;regulation of programmed cell death;5.89143664712245e-18!GO:0003676;nucleic acid binding;7.20081210671732e-18!GO:0048770;pigment granule;9.99860179596562e-18!GO:0042470;melanosome;9.99860179596562e-18!GO:0016070;RNA metabolic process;1.18624298081601e-17!GO:0006119;oxidative phosphorylation;2.7159795782147e-17!GO:0044265;cellular macromolecule catabolic process;5.07085334610892e-17!GO:0043412;biopolymer modification;1.05786677475505e-16!GO:0022618;protein-RNA complex assembly;1.24625251373473e-16!GO:0007243;protein kinase cascade;2.02864445918274e-16!GO:0006512;ubiquitin cycle;3.03499026558309e-16!GO:0005740;mitochondrial envelope;7.41726897836066e-16!GO:0006464;protein modification process;2.04330361407923e-15!GO:0031966;mitochondrial membrane;2.69590447868303e-15!GO:0005773;vacuole;5.140441001523e-15!GO:0043285;biopolymer catabolic process;6.57526605962607e-15!GO:0019866;organelle inner membrane;7.84774103336126e-15!GO:0006996;organelle organization and biogenesis;8.30535186935679e-15!GO:0016604;nuclear body;1.08227239064517e-14!GO:0043687;post-translational protein modification;1.71116153333875e-14!GO:0032553;ribonucleotide binding;2.15817481292504e-14!GO:0032555;purine ribonucleotide binding;2.15817481292504e-14!GO:0048523;negative regulation of cellular process;2.23079485738213e-14!GO:0050794;regulation of cellular process;2.82979559341106e-14!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.35901806362272e-14!GO:0019941;modification-dependent protein catabolic process;4.45083580066502e-14!GO:0043632;modification-dependent macromolecule catabolic process;4.45083580066502e-14!GO:0006511;ubiquitin-dependent protein catabolic process;4.65087275280978e-14!GO:0006605;protein targeting;4.72510757191845e-14!GO:0016874;ligase activity;5.06622956956637e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;5.40336449418249e-14!GO:0044257;cellular protein catabolic process;5.43175865297551e-14!GO:0009057;macromolecule catabolic process;6.25020158079434e-14!GO:0017076;purine nucleotide binding;9.4165058122855e-14!GO:0017111;nucleoside-triphosphatase activity;1.20707558132336e-13!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.38571570551736e-13!GO:0000323;lytic vacuole;1.4474689260341e-13!GO:0005764;lysosome;1.4474689260341e-13!GO:0016462;pyrophosphatase activity;1.44964037386201e-13!GO:0016817;hydrolase activity, acting on acid anhydrides;1.71631127735111e-13!GO:0015934;large ribosomal subunit;2.023850834088e-13!GO:0007242;intracellular signaling cascade;2.50561085103093e-13!GO:0003712;transcription cofactor activity;2.50700105616042e-13!GO:0008135;translation factor activity, nucleic acid binding;2.61555227476568e-13!GO:0005768;endosome;3.15960972162084e-13!GO:0006913;nucleocytoplasmic transport;4.09765159722241e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.52975491576507e-13!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.83206017465494e-13!GO:0051169;nuclear transport;8.05331723303499e-13!GO:0016607;nuclear speck;9.18465047636398e-13!GO:0005794;Golgi apparatus;1.03383551023748e-12!GO:0012505;endomembrane system;1.2774362317451e-12!GO:0048519;negative regulation of biological process;1.43248733899921e-12!GO:0044248;cellular catabolic process;1.53100407050981e-12!GO:0015935;small ribosomal subunit;1.58851492265645e-12!GO:0006457;protein folding;2.28507397639536e-12!GO:0005743;mitochondrial inner membrane;2.47000062633898e-12!GO:0000502;proteasome complex (sensu Eukaryota);3.64357549645982e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.25626935323865e-12!GO:0003743;translation initiation factor activity;4.51538695754868e-12!GO:0051246;regulation of protein metabolic process;4.72867241689872e-12!GO:0043069;negative regulation of programmed cell death;4.86261589742012e-12!GO:0043066;negative regulation of apoptosis;6.03374913369835e-12!GO:0030163;protein catabolic process;7.81587412324089e-12!GO:0006259;DNA metabolic process;7.99700805997505e-12!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.07883370829478e-11!GO:0044455;mitochondrial membrane part;1.11774349770739e-11!GO:0006413;translational initiation;1.52917048886734e-11!GO:0006793;phosphorus metabolic process;1.52917048886734e-11!GO:0006796;phosphate metabolic process;1.52917048886734e-11!GO:0065009;regulation of a molecular function;1.67007481287707e-11!GO:0006366;transcription from RNA polymerase II promoter;1.81643622602714e-11!GO:0050789;regulation of biological process;3.86215748926496e-11!GO:0051186;cofactor metabolic process;5.37927194793863e-11!GO:0006446;regulation of translational initiation;5.9378093096402e-11!GO:0005524;ATP binding;8.23411636883683e-11!GO:0032559;adenyl ribonucleotide binding;1.60967883278345e-10!GO:0005730;nucleolus;2.94131134178522e-10!GO:0016310;phosphorylation;3.26895357000759e-10!GO:0051082;unfolded protein binding;5.04791819950045e-10!GO:0006916;anti-apoptosis;7.34405423489549e-10!GO:0030554;adenyl nucleotide binding;7.59657799135805e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;9.50682517112993e-10!GO:0000375;RNA splicing, via transesterification reactions;9.50682517112993e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.50682517112993e-10!GO:0005635;nuclear envelope;1.0684898369909e-09!GO:0006732;coenzyme metabolic process;1.13866799156528e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.13866799156528e-09!GO:0031324;negative regulation of cellular metabolic process;1.15745700354493e-09!GO:0005746;mitochondrial respiratory chain;1.22392490572648e-09!GO:0065007;biological regulation;1.57465203435677e-09!GO:0048193;Golgi vesicle transport;1.81014864599412e-09!GO:0019829;cation-transporting ATPase activity;2.55786935767062e-09!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.91888406397112e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.22806405572947e-09!GO:0006950;response to stress;4.24310824784961e-09!GO:0005770;late endosome;4.27984476127727e-09!GO:0015986;ATP synthesis coupled proton transport;6.29298813584366e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.29298813584366e-09!GO:0008639;small protein conjugating enzyme activity;6.92164786035056e-09!GO:0043228;non-membrane-bound organelle;7.08999694740177e-09!GO:0043232;intracellular non-membrane-bound organelle;7.08999694740177e-09!GO:0050136;NADH dehydrogenase (quinone) activity;7.08999694740177e-09!GO:0003954;NADH dehydrogenase activity;7.08999694740177e-09!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.08999694740177e-09!GO:0016564;transcription repressor activity;7.13258619288403e-09!GO:0002376;immune system process;7.73646224006628e-09!GO:0005783;endoplasmic reticulum;8.5400573674922e-09!GO:0006417;regulation of translation;1.03776848005366e-08!GO:0019222;regulation of metabolic process;1.19264904853746e-08!GO:0016787;hydrolase activity;1.27519548489427e-08!GO:0031965;nuclear membrane;1.31357878040981e-08!GO:0019787;small conjugating protein ligase activity;1.45951732685366e-08!GO:0004842;ubiquitin-protein ligase activity;1.50997492958791e-08!GO:0008047;enzyme activator activity;1.51155580847073e-08!GO:0017038;protein import;1.58359958029904e-08!GO:0048522;positive regulation of cellular process;2.04019939951098e-08!GO:0009967;positive regulation of signal transduction;2.3445419974271e-08!GO:0044440;endosomal part;2.93210884829035e-08!GO:0010008;endosome membrane;2.93210884829035e-08!GO:0003713;transcription coactivator activity;3.03153529391217e-08!GO:0009152;purine ribonucleotide biosynthetic process;3.06732315822244e-08!GO:0009150;purine ribonucleotide metabolic process;3.22032322475675e-08!GO:0016481;negative regulation of transcription;3.45677489669338e-08!GO:0008565;protein transporter activity;3.58578770047174e-08!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.71225190100222e-08!GO:0006163;purine nucleotide metabolic process;3.75000078176496e-08!GO:0006164;purine nucleotide biosynthetic process;3.94380531983544e-08!GO:0015078;hydrogen ion transmembrane transporter activity;4.21401155670936e-08!GO:0050790;regulation of catalytic activity;4.22562944110016e-08!GO:0009892;negative regulation of metabolic process;4.25712012874137e-08!GO:0009056;catabolic process;6.44192811759204e-08!GO:0006754;ATP biosynthetic process;6.44192811759204e-08!GO:0006753;nucleoside phosphate metabolic process;6.44192811759204e-08!GO:0042775;organelle ATP synthesis coupled electron transport;6.48150293717482e-08!GO:0042773;ATP synthesis coupled electron transport;6.48150293717482e-08!GO:0005774;vacuolar membrane;6.5115023016019e-08!GO:0048518;positive regulation of biological process;6.57799872664063e-08!GO:0009259;ribonucleotide metabolic process;7.22296263332919e-08!GO:0051170;nuclear import;7.2630707762132e-08!GO:0044453;nuclear membrane part;8.11256363964635e-08!GO:0016469;proton-transporting two-sector ATPase complex;8.42659456079044e-08!GO:0042623;ATPase activity, coupled;9.37067730670323e-08!GO:0016887;ATPase activity;1.19192407197732e-07!GO:0030964;NADH dehydrogenase complex (quinone);1.27814398688203e-07!GO:0045271;respiratory chain complex I;1.27814398688203e-07!GO:0005747;mitochondrial respiratory chain complex I;1.27814398688203e-07!GO:0009260;ribonucleotide biosynthetic process;1.4265412410439e-07!GO:0019899;enzyme binding;1.42876044952775e-07!GO:0006606;protein import into nucleus;1.46062619295708e-07!GO:0016881;acid-amino acid ligase activity;1.60003264108966e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.71672790841491e-07!GO:0043065;positive regulation of apoptosis;1.78002949994633e-07!GO:0031326;regulation of cellular biosynthetic process;2.010597245323e-07!GO:0051188;cofactor biosynthetic process;2.15284834172497e-07!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.45513240679303e-07!GO:0043068;positive regulation of programmed cell death;2.49176831622062e-07!GO:0009889;regulation of biosynthetic process;2.54479101907783e-07!GO:0006461;protein complex assembly;2.8672186327373e-07!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.8672186327373e-07!GO:0044437;vacuolar part;3.19275028451771e-07!GO:0007049;cell cycle;3.19275028451771e-07!GO:0007264;small GTPase mediated signal transduction;3.34772624182238e-07!GO:0046034;ATP metabolic process;3.43271231769928e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.88703232781174e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.88703232781174e-07!GO:0016568;chromatin modification;3.88703232781174e-07!GO:0050657;nucleic acid transport;4.02061397453652e-07!GO:0051236;establishment of RNA localization;4.02061397453652e-07!GO:0050658;RNA transport;4.02061397453652e-07!GO:0009108;coenzyme biosynthetic process;4.31807454350829e-07!GO:0005765;lysosomal membrane;4.67214832161759e-07!GO:0006403;RNA localization;5.05555489658258e-07!GO:0009142;nucleoside triphosphate biosynthetic process;5.05555489658258e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.05555489658258e-07!GO:0005793;ER-Golgi intermediate compartment;5.76898066731687e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;5.80027004530361e-07!GO:0016563;transcription activator activity;6.1938460385541e-07!GO:0044432;endoplasmic reticulum part;6.29117298957141e-07!GO:0051726;regulation of cell cycle;6.74843373528946e-07!GO:0000074;regulation of progression through cell cycle;9.26185804775224e-07!GO:0009615;response to virus;9.39974242693631e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.66813024614258e-07!GO:0009144;purine nucleoside triphosphate metabolic process;9.66813024614258e-07!GO:0031980;mitochondrial lumen;9.88923079682624e-07!GO:0005759;mitochondrial matrix;9.88923079682624e-07!GO:0009055;electron carrier activity;1.08347239604586e-06!GO:0031982;vesicle;1.09237639301778e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.18724565952211e-06!GO:0009966;regulation of signal transduction;1.23359069586427e-06!GO:0031323;regulation of cellular metabolic process;1.2883719739347e-06!GO:0032446;protein modification by small protein conjugation;1.48652834538804e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.5675988465612e-06!GO:0006323;DNA packaging;1.7582646517814e-06!GO:0006752;group transfer coenzyme metabolic process;1.87455508234155e-06!GO:0006955;immune response;1.87455508234155e-06!GO:0048468;cell development;1.87657245171925e-06!GO:0045786;negative regulation of progression through cell cycle;1.94198636418373e-06!GO:0016044;membrane organization and biogenesis;2.17754001539543e-06!GO:0006917;induction of apoptosis;2.31666076893789e-06!GO:0005643;nuclear pore;2.54759998069879e-06!GO:0009141;nucleoside triphosphate metabolic process;2.75097226810636e-06!GO:0003924;GTPase activity;2.76271227016603e-06!GO:0005525;GTP binding;2.8845277134739e-06!GO:0016567;protein ubiquitination;2.90628226816103e-06!GO:0003714;transcription corepressor activity;3.01921927351439e-06!GO:0005096;GTPase activator activity;3.34877165431017e-06!GO:0012502;induction of programmed cell death;3.63528765723086e-06!GO:0006974;response to DNA damage stimulus;3.81403119582092e-06!GO:0006888;ER to Golgi vesicle-mediated transport;4.94023994799948e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;5.62065603644727e-06!GO:0030695;GTPase regulator activity;5.62499129547923e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;5.73780522376874e-06!GO:0051028;mRNA transport;6.23429108096134e-06!GO:0031252;leading edge;6.51867006735126e-06!GO:0004386;helicase activity;6.51867006735126e-06!GO:0008026;ATP-dependent helicase activity;7.03520569228588e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.03532144647719e-06!GO:0031410;cytoplasmic vesicle;8.56146217519788e-06!GO:0048475;coated membrane;8.80957623600502e-06!GO:0030117;membrane coat;8.80957623600502e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;8.92634375366575e-06!GO:0016197;endosome transport;8.94031149546438e-06!GO:0005839;proteasome core complex (sensu Eukaryota);9.11545553344087e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;9.32571088639603e-06!GO:0005769;early endosome;1.1104036880509e-05!GO:0043566;structure-specific DNA binding;1.17607279369034e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.25892084647594e-05!GO:0005789;endoplasmic reticulum membrane;1.45374164030551e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.46474945629101e-05!GO:0015399;primary active transmembrane transporter activity;1.46474945629101e-05!GO:0031988;membrane-bound vesicle;1.71902626345635e-05!GO:0046930;pore complex;1.99134402915156e-05!GO:0010468;regulation of gene expression;2.06964259522254e-05!GO:0009607;response to biotic stimulus;2.15010079660146e-05!GO:0031902;late endosome membrane;2.35801962525774e-05!GO:0042254;ribosome biogenesis and assembly;2.56791734387252e-05!GO:0003724;RNA helicase activity;2.57797544131621e-05!GO:0030120;vesicle coat;3.08483939540237e-05!GO:0030662;coated vesicle membrane;3.08483939540237e-05!GO:0045892;negative regulation of transcription, DNA-dependent;3.29862625127551e-05!GO:0006401;RNA catabolic process;3.81513282707236e-05!GO:0045259;proton-transporting ATP synthase complex;4.23001444742243e-05!GO:0032561;guanyl ribonucleotide binding;4.30961619819066e-05!GO:0019001;guanyl nucleotide binding;4.30961619819066e-05!GO:0051276;chromosome organization and biogenesis;4.55794434865393e-05!GO:0004298;threonine endopeptidase activity;4.67739522116801e-05!GO:0065002;intracellular protein transport across a membrane;4.93466952294342e-05!GO:0051427;hormone receptor binding;4.9790337559315e-05!GO:0051168;nuclear export;5.58980387445273e-05!GO:0006897;endocytosis;6.46389478322994e-05!GO:0010324;membrane invagination;6.46389478322994e-05!GO:0016023;cytoplasmic membrane-bound vesicle;6.4789826992367e-05!GO:0006613;cotranslational protein targeting to membrane;6.526193114013e-05!GO:0006281;DNA repair;6.8018052289241e-05!GO:0004674;protein serine/threonine kinase activity;7.09025902554204e-05!GO:0030532;small nuclear ribonucleoprotein complex;7.37675945123201e-05!GO:0003697;single-stranded DNA binding;7.57466565875852e-05!GO:0005083;small GTPase regulator activity;8.66901764798657e-05!GO:0035257;nuclear hormone receptor binding;8.66901764798657e-05!GO:0051336;regulation of hydrolase activity;8.66901764798657e-05!GO:0000245;spliceosome assembly;9.08167554384837e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000113790999968585!GO:0007265;Ras protein signal transduction;0.000113790999968585!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000141866732833795!GO:0009060;aerobic respiration;0.000142292769395797!GO:0008632;apoptotic program;0.000156512874148753!GO:0006399;tRNA metabolic process;0.000160042363258522!GO:0046822;regulation of nucleocytoplasmic transport;0.000160465411908296!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000160465411908296!GO:0004812;aminoacyl-tRNA ligase activity;0.000160465411908296!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000160465411908296!GO:0043492;ATPase activity, coupled to movement of substances;0.000165517409059331!GO:0030036;actin cytoskeleton organization and biogenesis;0.000168664464636341!GO:0005057;receptor signaling protein activity;0.000170340331289736!GO:0005761;mitochondrial ribosome;0.000182233239997834!GO:0000313;organellar ribosome;0.000182233239997834!GO:0022402;cell cycle process;0.000187859719399146!GO:0044431;Golgi apparatus part;0.000191775823975509!GO:0006818;hydrogen transport;0.000193361313507186!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000194683595841182!GO:0006350;transcription;0.000199535719818395!GO:0001816;cytokine production;0.000216923681344107!GO:0005885;Arp2/3 protein complex;0.000224599959975592!GO:0006402;mRNA catabolic process;0.000232148227026498!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000232529496506044!GO:0016740;transferase activity;0.00023897971551385!GO:0005798;Golgi-associated vesicle;0.000252757466938554!GO:0000151;ubiquitin ligase complex;0.000254069549167223!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000263387809445431!GO:0043038;amino acid activation;0.00026799597445753!GO:0006418;tRNA aminoacylation for protein translation;0.00026799597445753!GO:0043039;tRNA aminoacylation;0.00026799597445753!GO:0032940;secretion by cell;0.000274175517023541!GO:0022890;inorganic cation transmembrane transporter activity;0.000300682385434949!GO:0008186;RNA-dependent ATPase activity;0.000319313328499422!GO:0015992;proton transport;0.000338487460664467!GO:0007040;lysosome organization and biogenesis;0.000349124083028057!GO:0009893;positive regulation of metabolic process;0.000353240284951506!GO:0001726;ruffle;0.000356599417669608!GO:0046519;sphingoid metabolic process;0.000362871590667885!GO:0045333;cellular respiration;0.000364309045333581!GO:0003729;mRNA binding;0.000433951511648576!GO:0051789;response to protein stimulus;0.000458531368212375!GO:0006986;response to unfolded protein;0.000458531368212375!GO:0009719;response to endogenous stimulus;0.000463035165835536!GO:0007034;vacuolar transport;0.00051274150860836!GO:0005667;transcription factor complex;0.000517227178624753!GO:0051223;regulation of protein transport;0.000526591619674849!GO:0002757;immune response-activating signal transduction;0.000536793682055958!GO:0006672;ceramide metabolic process;0.000613866007858158!GO:0007050;cell cycle arrest;0.000623907040529479!GO:0006612;protein targeting to membrane;0.000683260754664554!GO:0008234;cysteine-type peptidase activity;0.000709381418327998!GO:0007033;vacuole organization and biogenesis;0.000730850326495235!GO:0009117;nucleotide metabolic process;0.000794797584718174!GO:0051338;regulation of transferase activity;0.000826798744403002!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000840444101978035!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.000862418010068141!GO:0043623;cellular protein complex assembly;0.000869753855849135!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000887155489959616!GO:0004004;ATP-dependent RNA helicase activity;0.000941893002977698!GO:0007005;mitochondrion organization and biogenesis;0.000948750722082595!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000978547494880418!GO:0002764;immune response-regulating signal transduction;0.00099796298650592!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00102267418597244!GO:0008654;phospholipid biosynthetic process;0.00107662458051579!GO:0005637;nuclear inner membrane;0.00109915984416214!GO:0033157;regulation of intracellular protein transport;0.00115740443439678!GO:0042306;regulation of protein import into nucleus;0.00115740443439678!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00119503179973263!GO:0005099;Ras GTPase activator activity;0.00119678781097321!GO:0046983;protein dimerization activity;0.00123678940420096!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00125651265303362!GO:0007041;lysosomal transport;0.00132513568854044!GO:0030149;sphingolipid catabolic process;0.00143200709117029!GO:0043087;regulation of GTPase activity;0.00148790629330303!GO:0030029;actin filament-based process;0.00153886022826895!GO:0044262;cellular carbohydrate metabolic process;0.00160051879998404!GO:0016072;rRNA metabolic process;0.00173657442045938!GO:0033116;ER-Golgi intermediate compartment membrane;0.00174013024606475!GO:0043085;positive regulation of catalytic activity;0.00175039695593993!GO:0043549;regulation of kinase activity;0.00187433129474317!GO:0043021;ribonucleoprotein binding;0.00207216452331811!GO:0016779;nucleotidyltransferase activity;0.00207216452331811!GO:0016301;kinase activity;0.00207216452331811!GO:0016363;nuclear matrix;0.00221620007413779!GO:0031901;early endosome membrane;0.00225540734609367!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00234008650788257!GO:0051090;regulation of transcription factor activity;0.00235090676126641!GO:0065004;protein-DNA complex assembly;0.00244384755360664!GO:0006919;caspase activation;0.0025027040206432!GO:0006364;rRNA processing;0.00250523563329105!GO:0031072;heat shock protein binding;0.00251965834216952!GO:0045454;cell redox homeostasis;0.00253565912103113!GO:0002429;immune response-activating cell surface receptor signaling pathway;0.00254000334647064!GO:0045941;positive regulation of transcription;0.00254743316875378!GO:0030099;myeloid cell differentiation;0.00260818543150855!GO:0002274;myeloid leukocyte activation;0.00276356786184329!GO:0016251;general RNA polymerase II transcription factor activity;0.00290458373579345!GO:0045859;regulation of protein kinase activity;0.00291222280711078!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00293035803103004!GO:0018193;peptidyl-amino acid modification;0.00299862583805254!GO:0048487;beta-tubulin binding;0.0030015006290686!GO:0060090;molecular adaptor activity;0.00308108635658824!GO:0019904;protein domain specific binding;0.00316825202373656!GO:0042990;regulation of transcription factor import into nucleus;0.00324202783676717!GO:0042991;transcription factor import into nucleus;0.00324202783676717!GO:0031325;positive regulation of cellular metabolic process;0.00338252380376563!GO:0005741;mitochondrial outer membrane;0.00355486906575188!GO:0043281;regulation of caspase activity;0.00362598888736846!GO:0006333;chromatin assembly or disassembly;0.00375347418138948!GO:0051187;cofactor catabolic process;0.00390690119761486!GO:0019221;cytokine and chemokine mediated signaling pathway;0.00391835667696962!GO:0003690;double-stranded DNA binding;0.00403128344304628!GO:0045893;positive regulation of transcription, DNA-dependent;0.00404141090509677!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00420203901543849!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00420203901543849!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00420203901543849!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.00422283380092907!GO:0006099;tricarboxylic acid cycle;0.00422283380092907!GO:0046356;acetyl-CoA catabolic process;0.00422283380092907!GO:0002768;immune response-regulating cell surface receptor signaling pathway;0.00436834581320217!GO:0005813;centrosome;0.0045329470019631!GO:0006643;membrane lipid metabolic process;0.00457697084266813!GO:0022415;viral reproductive process;0.00461408943195439!GO:0045045;secretory pathway;0.00489250370671304!GO:0045321;leukocyte activation;0.00493749180755649!GO:0004197;cysteine-type endopeptidase activity;0.00493749180755649!GO:0043280;positive regulation of caspase activity;0.00495103889005917!GO:0000139;Golgi membrane;0.0050227850669923!GO:0006607;NLS-bearing substrate import into nucleus;0.00554397016737436!GO:0030097;hemopoiesis;0.00584220679589133!GO:0045449;regulation of transcription;0.00584220679589133!GO:0048471;perinuclear region of cytoplasm;0.00586807730373626!GO:0000287;magnesium ion binding;0.00591455797819747!GO:0006352;transcription initiation;0.00593213993961135!GO:0003702;RNA polymerase II transcription factor activity;0.00601948631525751!GO:0006891;intra-Golgi vesicle-mediated transport;0.00613633725377557!GO:0051252;regulation of RNA metabolic process;0.00615023895455919!GO:0046966;thyroid hormone receptor binding;0.00621385422859775!GO:0001817;regulation of cytokine production;0.00623665864992998!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00639644950464153!GO:0019377;glycolipid catabolic process;0.0066631171538301!GO:0042802;identical protein binding;0.0068741162517754!GO:0009165;nucleotide biosynthetic process;0.00706191370932159!GO:0006468;protein amino acid phosphorylation;0.00741873765275701!GO:0006351;transcription, DNA-dependent;0.00750341586385664!GO:0006084;acetyl-CoA metabolic process;0.00765291140867319!GO:0030041;actin filament polymerization;0.00824202913920468!GO:0032774;RNA biosynthetic process;0.00843322264173481!GO:0030867;rough endoplasmic reticulum membrane;0.00843708692423402!GO:0019867;outer membrane;0.00871736665173626!GO:0030134;ER to Golgi transport vesicle;0.00871736665173626!GO:0008270;zinc ion binding;0.00873310442785392!GO:0050851;antigen receptor-mediated signaling pathway;0.00876690036076648!GO:0031625;ubiquitin protein ligase binding;0.00876690036076648!GO:0048500;signal recognition particle;0.00893875433154316!GO:0004185;serine carboxypeptidase activity;0.00902584026475473!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00910612456725506!GO:0046479;glycosphingolipid catabolic process;0.00994920547533167!GO:0017166;vinculin binding;0.00994920547533167!GO:0000785;chromatin;0.0100293688590121!GO:0031968;organelle outer membrane;0.0102340489607142!GO:0006414;translational elongation;0.0106361720985907!GO:0005484;SNAP receptor activity;0.011269085643566!GO:0032386;regulation of intracellular transport;0.0117254808154343!GO:0051707;response to other organism;0.0117623260017492!GO:0030127;COPII vesicle coat;0.0117623260017492!GO:0012507;ER to Golgi transport vesicle membrane;0.0117623260017492!GO:0006954;inflammatory response;0.0119641962814142!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0121759973824468!GO:0032318;regulation of Ras GTPase activity;0.012207500511839!GO:0009109;coenzyme catabolic process;0.0123455503719838!GO:0006458;'de novo' protein folding;0.0124594669939576!GO:0051084;'de novo' posttranslational protein folding;0.0124594669939576!GO:0006091;generation of precursor metabolites and energy;0.0124594669939576!GO:0016791;phosphoric monoester hydrolase activity;0.0129148310805677!GO:0005048;signal sequence binding;0.0133772782404654!GO:0019318;hexose metabolic process;0.0137560582312597!GO:0045637;regulation of myeloid cell differentiation;0.0138800672349164!GO:0043488;regulation of mRNA stability;0.0139963148842586!GO:0043487;regulation of RNA stability;0.0139963148842586!GO:0003725;double-stranded RNA binding;0.0143698685710437!GO:0030521;androgen receptor signaling pathway;0.0144303515049018!GO:0006611;protein export from nucleus;0.0147644064955652!GO:0030118;clathrin coat;0.0148323751113233!GO:0030503;regulation of cell redox homeostasis;0.0149087280846999!GO:0030658;transport vesicle membrane;0.0149087280846999!GO:0042613;MHC class II protein complex;0.015111648683646!GO:0006405;RNA export from nucleus;0.015111648683646!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0154657860236884!GO:0045047;protein targeting to ER;0.0154657860236884!GO:0046914;transition metal ion binding;0.0156083583492742!GO:0030176;integral to endoplasmic reticulum membrane;0.0157141241949111!GO:0005815;microtubule organizing center;0.0158023153020516!GO:0030663;COPI coated vesicle membrane;0.0162951176499619!GO:0030126;COPI vesicle coat;0.0162951176499619!GO:0005694;chromosome;0.016296401558099!GO:0002444;myeloid leukocyte mediated immunity;0.0163910811589754!GO:0007259;JAK-STAT cascade;0.0164461671828048!GO:0008139;nuclear localization sequence binding;0.0165602877399039!GO:0030518;steroid hormone receptor signaling pathway;0.0166356469454729!GO:0043300;regulation of leukocyte degranulation;0.0168575564846159!GO:0004177;aminopeptidase activity;0.0171118279578607!GO:0050811;GABA receptor binding;0.0171118279578607!GO:0043621;protein self-association;0.0171118279578607!GO:0033367;protein localization in mast cell secretory granule;0.0171118279578607!GO:0033365;protein localization in organelle;0.0171118279578607!GO:0033371;T cell secretory granule organization and biogenesis;0.0171118279578607!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.0171118279578607!GO:0033375;protease localization in T cell secretory granule;0.0171118279578607!GO:0042629;mast cell granule;0.0171118279578607!GO:0033377;maintenance of protein localization in T cell secretory granule;0.0171118279578607!GO:0033364;mast cell secretory granule organization and biogenesis;0.0171118279578607!GO:0033380;granzyme B localization in T cell secretory granule;0.0171118279578607!GO:0033379;maintenance of protease localization in T cell secretory granule;0.0171118279578607!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.0171118279578607!GO:0033368;protease localization in mast cell secretory granule;0.0171118279578607!GO:0033366;protein localization in secretory granule;0.0171118279578607!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.0171118279578607!GO:0033374;protein localization in T cell secretory granule;0.0171118279578607!GO:0006665;sphingolipid metabolic process;0.017196858026847!GO:0043433;negative regulation of transcription factor activity;0.0173646883390052!GO:0045576;mast cell activation;0.0176689376223673!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0181945411477949!GO:0008286;insulin receptor signaling pathway;0.0183401136897776!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0183440093141796!GO:0030027;lamellipodium;0.0185782811150446!GO:0005070;SH3/SH2 adaptor activity;0.0186039522700046!GO:0015631;tubulin binding;0.0187484906100264!GO:0051092;activation of NF-kappaB transcription factor;0.0189960828110494!GO:0001819;positive regulation of cytokine production;0.019259773751807!GO:0005996;monosaccharide metabolic process;0.019259773751807!GO:0000209;protein polyubiquitination;0.0197768514773043!GO:0051098;regulation of binding;0.0202951249575306!GO:0045920;negative regulation of exocytosis;0.0206447474941043!GO:0043301;negative regulation of leukocyte degranulation;0.0206447474941043!GO:0043305;negative regulation of mast cell degranulation;0.0206447474941043!GO:0008624;induction of apoptosis by extracellular signals;0.0209491803905549!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0209779559875758!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0209779559875758!GO:0004722;protein serine/threonine phosphatase activity;0.0210071316782567!GO:0019882;antigen processing and presentation;0.0210602299886187!GO:0000118;histone deacetylase complex;0.0210650362658742!GO:0030218;erythrocyte differentiation;0.021321955771488!GO:0043299;leukocyte degranulation;0.021321955771488!GO:0046467;membrane lipid biosynthetic process;0.0214488661041385!GO:0051345;positive regulation of hydrolase activity;0.0215679155218568!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0216480858894788!GO:0030137;COPI-coated vesicle;0.0217061849179275!GO:0019843;rRNA binding;0.0223919451045967!GO:0051049;regulation of transport;0.0224961529009924!GO:0051101;regulation of DNA binding;0.0226259113069827!GO:0002822;regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains.;0.0229103775787232!GO:0002819;regulation of adaptive immune response;0.0229103775787232!GO:0043022;ribosome binding;0.0229278980337552!GO:0032763;regulation of mast cell cytokine production;0.023416262739534!GO:0032762;mast cell cytokine production;0.023416262739534!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0236060120155915!GO:0000339;RNA cap binding;0.0243335630390024!GO:0008312;7S RNA binding;0.0243335630390024!GO:0035035;histone acetyltransferase binding;0.0243497854567516!GO:0006689;ganglioside catabolic process;0.0252160635388218!GO:0006516;glycoprotein catabolic process;0.0255156569373895!GO:0003711;transcription elongation regulator activity;0.02563456002045!GO:0030100;regulation of endocytosis;0.0260949564437151!GO:0030119;AP-type membrane coat adaptor complex;0.0265932834409565!GO:0030133;transport vesicle;0.0269976228575371!GO:0006749;glutathione metabolic process;0.0269976228575371!GO:0015923;mannosidase activity;0.0277612768750195!GO:0000049;tRNA binding;0.0290907627338296!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0292616402453839!GO:0015036;disulfide oxidoreductase activity;0.029545263585039!GO:0008017;microtubule binding;0.029630639167618!GO:0006914;autophagy;0.0298259711561009!GO:0008656;caspase activator activity;0.0302073832875693!GO:0030660;Golgi-associated vesicle membrane;0.0304149925352825!GO:0004563;beta-N-acetylhexosaminidase activity;0.0304563403316843!GO:0030258;lipid modification;0.0306193555023404!GO:0042110;T cell activation;0.0315036384135302!GO:0035258;steroid hormone receptor binding;0.0318029436892442!GO:0051056;regulation of small GTPase mediated signal transduction;0.0318029436892442!GO:0005905;coated pit;0.0319054989057788!GO:0002520;immune system development;0.0322597873109566!GO:0005791;rough endoplasmic reticulum;0.0322597873109566!GO:0008383;manganese superoxide dismutase activity;0.0336106559812553!GO:0001315;age-dependent response to reactive oxygen species;0.0336106559812553!GO:0051235;maintenance of localization;0.0337694638496362!GO:0001775;cell activation;0.0344247044252759!GO:0046466;membrane lipid catabolic process;0.0344563038697179!GO:0046578;regulation of Ras protein signal transduction;0.0346908278052467!GO:0048534;hemopoietic or lymphoid organ development;0.0347439641417866!GO:0002252;immune effector process;0.0347439641417866!GO:0002224;toll-like receptor signaling pathway;0.0347439641417866!GO:0002221;pattern recognition receptor signaling pathway;0.0347439641417866!GO:0003746;translation elongation factor activity;0.0351588053327651!GO:0051085;chaperone cofactor-dependent protein folding;0.0351588053327651!GO:0033033;negative regulation of myeloid cell apoptosis;0.0351588053327651!GO:0001803;regulation of type III hypersensitivity;0.0351588053327651!GO:0032733;positive regulation of interleukin-10 production;0.0351588053327651!GO:0033025;regulation of mast cell apoptosis;0.0351588053327651!GO:0001805;positive regulation of type III hypersensitivity;0.0351588053327651!GO:0033023;mast cell homeostasis;0.0351588053327651!GO:0002431;Fc receptor mediated stimulatory signaling pathway;0.0351588053327651!GO:0033032;regulation of myeloid cell apoptosis;0.0351588053327651!GO:0001802;type III hypersensitivity;0.0351588053327651!GO:0033028;myeloid cell apoptosis;0.0351588053327651!GO:0042590;antigen processing and presentation of exogenous peptide antigen via MHC class I;0.0351588053327651!GO:0033026;negative regulation of mast cell apoptosis;0.0351588053327651!GO:0033024;mast cell apoptosis;0.0351588053327651!GO:0006354;RNA elongation;0.0351588053327651!GO:0051091;positive regulation of transcription factor activity;0.0359015402169156!GO:0016311;dephosphorylation;0.0370046252969612!GO:0002467;germinal center formation;0.0370046252969612!GO:0046649;lymphocyte activation;0.0384313872354607!GO:0050900;leukocyte migration;0.0389719300807573!GO:0030131;clathrin adaptor complex;0.0389975633767259!GO:0006650;glycerophospholipid metabolic process;0.0396902902329292!GO:0004860;protein kinase inhibitor activity;0.0401934613796557!GO:0006376;mRNA splice site selection;0.0406899163855653!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0406899163855653!GO:0032760;positive regulation of tumor necrosis factor production;0.0412020977902705!GO:0002237;response to molecule of bacterial origin;0.0416693270220075!GO:0006260;DNA replication;0.0420315908638387!GO:0045113;regulation of integrin biosynthetic process;0.0422386787810411!GO:0045112;integrin biosynthetic process;0.0422386787810411!GO:0005684;U2-dependent spliceosome;0.0426471394343977!GO:0000165;MAPKKK cascade;0.0429673245078156!GO:0006355;regulation of transcription, DNA-dependent;0.0430675120719207!GO:0030984;kininogen binding;0.0431639069829115!GO:0004213;cathepsin B activity;0.0431639069829115!GO:0008637;apoptotic mitochondrial changes;0.0439413297174859!GO:0006465;signal peptide processing;0.0440249284356756!GO:0019752;carboxylic acid metabolic process;0.0444728497242382!GO:0030833;regulation of actin filament polymerization;0.0447807157494333!GO:0000082;G1/S transition of mitotic cell cycle;0.0449911589100473!GO:0043304;regulation of mast cell degranulation;0.0450356950267439!GO:0008538;proteasome activator activity;0.0451605556888388!GO:0032640;tumor necrosis factor production;0.0462038462880113!GO:0031647;regulation of protein stability;0.0462779168331177!GO:0051247;positive regulation of protein metabolic process;0.0463280297240217!GO:0043506;regulation of JNK activity;0.0463280297240217!GO:0002824;positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.046402598726012!GO:0002821;positive regulation of adaptive immune response;0.046402598726012!GO:0030384;phosphoinositide metabolic process;0.0466248013366342!GO:0016505;apoptotic protease activator activity;0.0470660475447765!GO:0040029;regulation of gene expression, epigenetic;0.0471555781337901!GO:0042348;NF-kappaB import into nucleus;0.0475108123246875!GO:0042345;regulation of NF-kappaB import into nucleus;0.0475108123246875!GO:0019883;antigen processing and presentation of endogenous antigen;0.0478644429032236!GO:0008154;actin polymerization and/or depolymerization;0.0478644429032236!GO:0008629;induction of apoptosis by intracellular signals;0.0479878544915624!GO:0042611;MHC protein complex;0.0480884148039826!GO:0005100;Rho GTPase activator activity;0.0481557746681121!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0486212195314661!GO:0045603;positive regulation of endothelial cell differentiation;0.0486212195314661!GO:0003727;single-stranded RNA binding;0.0486212195314661!GO:0051050;positive regulation of transport;0.0489494232947927!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0489831438574844!GO:0033673;negative regulation of kinase activity;0.0490289247576672!GO:0006469;negative regulation of protein kinase activity;0.0490289247576672!GO:0005975;carbohydrate metabolic process;0.0493106625110782!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0493106625110782!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0493106625110782!GO:0005788;endoplasmic reticulum lumen;0.0497676222471224
 +
|sample_id=11873
 +
|sample_note=
 +
|sample_sex=male
 +
|sample_species=Human (Homo sapiens)
 +
|sample_strain=
 +
|sample_tissue=
 +
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Latest revision as of 12:23, 10 August 2017

Name:CD14+ monocytes - mock treated, donor2
Species:Human (Homo sapiens)
Library ID:CNhs13484
Sample type:primary cells
Genomic View: UCSC
MicroRNAs:Including candidate novel miRNAs(CAGE samples)
Excluding candidate novel miRNAs(CAGE samples)
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexmale
age51
cell typemonocyte
cell lineNA
companyNA
collaborationChristine Wells (University of Queensland)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberD4-4
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

Accession numbers
MethodSample accession id
CAGE  SAMD00005767
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13484 CAGE DRX008133 DRR009005
Accession ID Hg19

Library idBAMCTSS
CNhs13484 DRZ000430 DRZ001815
Accession ID Hg38

Library idBAMCTSS
CNhs13484 DRZ011780 DRZ013165
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0.139
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis--0.119
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.329
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma--0.49
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.119
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.139
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.743
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.139
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.139
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0.139
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.383
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.36
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle--0.0307
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.824
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.139
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0.139
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.128
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.139
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.00134
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0.244
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus--0.766
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0.244
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.894
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.585
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.329
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.824
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.291
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.457
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.4
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0.329
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.173
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small--0.709
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.461
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340.139
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.892
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.244
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.583
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.069
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0.139
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.4
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0.881
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.244
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.139
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0.244
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs13484

Jaspar motif P-value
MA0002.2 1.13982e-6
MA0003.1 0.297
MA0004.1 0.382
MA0006.1 0.799
MA0007.1 0.804
MA0009.1 0.254
MA0014.1 0.955
MA0017.1 0.0104
MA0018.2 0.439
MA0019.1 0.638
MA0024.1 8.41664e-4
MA0025.1 0.0304
MA0027.1 0.784
MA0028.1 0.164
MA0029.1 0.425
MA0030.1 0.563
MA0031.1 0.957
MA0035.2 0.537
MA0038.1 0.0195
MA0039.2 0.693
MA0040.1 0.338
MA0041.1 0.561
MA0042.1 0.822
MA0043.1 0.0189
MA0046.1 0.147
MA0047.2 0.45
MA0048.1 0.844
MA0050.1 3.35974e-4
MA0051.1 0.138
MA0052.1 0.911
MA0055.1 0.297
MA0057.1 0.727
MA0058.1 0.162
MA0059.1 0.489
MA0060.1 1.05446e-11
MA0061.1 0.00221
MA0062.2 0.315
MA0065.2 0.0194
MA0066.1 0.0802
MA0067.1 7.81356e-4
MA0068.1 0.194
MA0069.1 0.722
MA0070.1 0.05
MA0071.1 0.202
MA0072.1 0.738
MA0073.1 0.3
MA0074.1 0.212
MA0076.1 0.156
MA0077.1 0.183
MA0078.1 0.548
MA0079.2 0.789
MA0080.2 1.21096e-16
MA0081.1 3.78659e-4
MA0083.1 0.723
MA0084.1 0.779
MA0087.1 0.928
MA0088.1 0.496
MA0090.1 0.12
MA0091.1 0.372
MA0092.1 0.224
MA0093.1 0.378
MA0099.2 3.01452e-33
MA0100.1 0.671
MA0101.1 0.0505
MA0102.2 5.46054e-5
MA0103.1 0.714
MA0104.2 0.951
MA0105.1 5.03304e-6
MA0106.1 0.735
MA0107.1 0.0193
MA0108.2 0.0018
MA0111.1 0.308
MA0112.2 5.43569e-5
MA0113.1 0.991
MA0114.1 0.18
MA0115.1 0.616
MA0116.1 2.34896e-4
MA0117.1 0.319
MA0119.1 0.422
MA0122.1 0.629
MA0124.1 0.359
MA0125.1 0.392
MA0131.1 0.371
MA0135.1 0.292
MA0136.1 9.20282e-16
MA0137.2 0.772
MA0138.2 0.77
MA0139.1 0.78
MA0140.1 0.497
MA0141.1 0.0644
MA0142.1 0.57
MA0143.1 0.49
MA0144.1 0.238
MA0145.1 0.164
MA0146.1 0.0568
MA0147.1 0.984
MA0148.1 0.978
MA0149.1 0.196
MA0150.1 7.75027e-13
MA0152.1 0.279
MA0153.1 0.00583
MA0154.1 0.00205
MA0155.1 0.737
MA0156.1 1.77919e-8
MA0157.1 0.548
MA0159.1 0.0113
MA0160.1 0.0237
MA0162.1 0.966
MA0163.1 3.97054e-6
MA0164.1 0.747
MA0258.1 0.00248
MA0259.1 0.466



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs13484

Novel motif P-value
1 0.123
10 0.0241
100 0.604
101 0.611
102 0.338
103 0.244
104 0.727
105 0.335
106 6.73142e-4
107 0.14
108 0.999
109 0.22
11 0.2
110 0.295
111 0.0536
112 0.192
113 0.604
114 0.0161
115 0.236
116 0.792
117 0.0659
118 0.189
119 0.191
12 0.378
120 0.921
121 0.519
122 0.51
123 0.0585
124 0.816
125 0.83
126 0.253
127 0.252
128 0.0206
129 0.412
13 0.271
130 0.133
131 0.376
132 0.0748
133 0.94
134 0.56
135 0.219
136 0.819
137 0.00391
138 0.174
139 0.037
14 0.387
140 0.119
141 0.441
142 0.964
143 0.027
144 0.834
145 0.545
146 0.62
147 0.26
148 0.0155
149 0.598
15 0.157
150 0.51
151 0.281
152 0.0821
153 0.363
154 0.383
155 0.27
156 0.88
157 0.48
158 0.0815
159 0.739
16 0.326
160 0.473
161 0.596
162 0.364
163 0.605
164 0.175
165 0.141
166 0.504
167 0.308
168 0.466
169 0.00913
17 0.16
18 0.173
19 0.257
2 0.823
20 0.447
21 0.208
22 0.155
23 0.0568
24 0.243
25 0.334
26 0.045
27 0.618
28 0.416
29 0.386
3 0.0713
30 0.701
31 0.674
32 0.831
33 0.625
34 0.309
35 0.201
36 0.256
37 0.0675
38 0.299
39 0.728
4 0.723
40 0.306
41 0.0134
42 0.37
43 0.0509
44 0.694
45 0.61
46 0.124
47 0.584
48 0.484
49 0.116
5 0.207
50 0.976
51 0.317
52 0.259
53 0.244
54 0.274
55 0.202
56 0.631
57 0.769
58 0.0781
59 0.0892
6 0.587
60 0.0385
61 0.423
62 0.0268
63 0.465
64 0.421
65 0.199
66 0.345
67 0.426
68 0.773
69 0.638
7 0.252
70 0.0162
71 0.0355
72 0.246
73 0.0894
74 0.0425
75 0.0802
76 0.285
77 0.371
78 0.0865
79 0.0912
8 0.361
80 0.237
81 0.399
82 0.0839
83 0.145
84 0.663
85 0.00833
86 0.0356
87 0.365
88 0.409
89 0.31
9 0.332
90 0.0722
91 0.349
92 0.144
93 0.143
94 0.033
95 0.405
96 0.543
97 0.999
98 0.142
99 0.159



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs13484


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000343 (control treatment sample)
0000350 (experimentally modified sample)
0011101 (human CD14-positive monocytes - mock treated sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)