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FF:1263-45I1

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Name:adrenal gland, embryo E17
Species:Mouse (Mus musculus)
Library ID:CNhs11043
Sample type:developmental
Genomic View: UCSC
MicroRNAs:Including candidate novel miRNAs(CAGE samples)
Excluding candidate novel miRNAs(CAGE samples)
CAGEd-oPOSSUM:link
Additional information
Sample information
strainC57BL/6J
tissueadrenal gland
dev stage17 days embryo
sexmixture
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

Accession numbers
MethodSample accession id
CAGE  SAMD00004758
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11043 CAGE DRX008930 DRR009804
Accession ID Mm9

Library idBAMCTSS
CNhs11043 DRZ001229 DRZ002612
Accession ID Mm10

Library idBAMCTSS
CNhs11043 DRZ012579 DRZ013962
Download raw sequence, BAM & CTSS
Mm9
FastaBAMCTSS
downloaddownloaddonwload
Mm10
BAMCTSS
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Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

CNhs11043

MCL coexpression id Coexpression dpi cluster scores median value
0 0
1 0
10 0
100 0
1000 0.0901
1001 0
1002 0.261
1003 --0.0704
1004 0
1005 --0.0221
1006 0.0465
1007 --0.0952
1008 0
1009 0.107
101 --0.0277
1010 0
1011 --0.0694
1012 0
1013 --0.00155
1014 0.239
1015 0.0435
1016 0.0833
1017 0
1018 0
1019 0
102 0
1020 0
1021 0
1022 0.0123
1023 0
1024 0.0259
1025 0.0676
1026 0
1027 --0.0174
1028 0
1029 --0.0181
103 0.284
1030 0
1031 0.218
1032 --0.0526
1033 0.0901
1034 0.00392
1035 0
1036 0.0455
1037 0
1038 --0.0699
1039 0.127
104 0
1040 --0.0215
1041 0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11043

Jaspar motif P-value
MA0002.2 0.461
MA0003.1 0.176
MA0004.1 0.00297
MA0006.1 0.317
MA0007.1 0.854
MA0009.1 0.0202
MA0014.1 0.598
MA0017.1 0.906
MA0018.2 0.332
MA0019.1 0.679
MA0024.1 0.0949
MA0025.1 0.797
MA0027.1 0.0261
MA0028.1 0.151
MA0029.1 1.40336e-4
MA0030.1 0.936
MA0031.1 0.815
MA0035.2 0.0202
MA0038.1 0.316
MA0039.2 0.203
MA0040.1 0.103
MA0041.1 0.184
MA0042.1 0.357
MA0043.1 0.15
MA0046.1 0.00274
MA0047.2 0.53
MA0048.1 0.0378
MA0050.1 0.00137
MA0051.1 1.13337e-5
MA0052.1 0.523
MA0055.1 0.348
MA0057.1 1
MA0058.1 0.121
MA0059.1 0.368
MA0060.1 0.284
MA0061.1 0.876
MA0062.2 0.0032
MA0065.2 0.0394
MA0066.1 0.968
MA0067.1 0.185
MA0068.1 0.238
MA0069.1 0.0817
MA0070.1 0.00166
MA0071.1 0.0575
MA0072.1 0.107
MA0073.1 0.767
MA0074.1 0.894
MA0076.1 0.138
MA0077.1 0.537
MA0078.1 0.933
MA0079.2 0.396
MA0080.2 2.09595e-5
MA0081.1 0.182
MA0083.1 0.0348
MA0084.1 0.0474
MA0087.1 0.0175
MA0088.1 0.397
MA0090.1 0.449
MA0091.1 0.22
MA0092.1 0.84
MA0093.1 0.0382
MA0099.2 0.067
MA0100.1 0.0467
MA0101.1 0.144
MA0102.2 0.163
MA0103.1 2.55865e-7
MA0104.2 0.157
MA0105.1 0.407
MA0106.1 0.926
MA0107.1 0.029
MA0108.2 0.00484
MA0111.1 0.733
MA0112.2 0.0428
MA0113.1 0.963
MA0114.1 0.165
MA0115.1 0.717
MA0116.1 0.202
MA0117.1 0.721
MA0119.1 0.00809
MA0122.1 0.512
MA0124.1 0.906
MA0125.1 0.154
MA0131.1 0.32
MA0135.1 0.596
MA0136.1 4.33673e-5
MA0137.2 0.29
MA0138.2 0.221
MA0139.1 0.681
MA0140.1 2.29917e-5
MA0141.1 1.97647e-4
MA0142.1 0.37
MA0143.1 0.1
MA0144.1 0.565
MA0145.1 0.214
MA0146.1 0.508
MA0147.1 0.149
MA0148.1 0.854
MA0149.1 0.575
MA0150.1 0.0839
MA0152.1 0.928
MA0153.1 0.0737
MA0154.1 0.0342
MA0155.1 0.319
MA0156.1 2.82498e-4
MA0157.1 0.328
MA0159.1 0.908
MA0160.1 0.0722
MA0162.1 0.296
MA0163.1 0.0332
MA0164.1 0.551
MA0258.1 0.263
MA0259.1 0.132



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11043

Novel motif P-value
1 0.136
10 0.688
100 0.882
101 0.884
102 0.914
103 0.855
104 0.918
105 0.665
106 0.565
107 0.361
108 0.176
109 0.245
11 0.313
110 0.0748
111 0.0923
112 0.713
113 0.801
114 0.236
115 0.493
116 0.523
117 0.285
118 0.849
119 0.535
12 0.351
120 0.143
121 0.908
122 0.413
123 0.202
124 0.31
125 0.00928
126 0.136
127 0.947
128 0.109
129 0.727
13 0.409
130 0.999
131 0.357
132 0.754
133 0.298
134 0.266
135 0.231
136 0.171
137 0.653
138 0.112
139 0.9
14 0.728
140 0.664
141 0.916
142 0.38
143 0.551
144 0.305
145 0.791
146 0.159
147 0.87
148 0.406
149 0.108
15 0.359
150 0.379
151 0.923
152 0.185
153 0.663
154 0.126
155 0.616
156 9.22466e-6
157 0.0903
158 0.0528
159 0.0151
160 0.201
161 0.844
162 0.785
163 0.46
164 0.555
165 0.344
166 0.148
167 0.0902
168 0.526
169 0.0729
17 0.483
18 0.289
19 0.0197
2 0.134
20 0.157
21 0.818
22 0.0598
23 0.783
24 0.753
25 0.374
26 0.98
27 0.587
28 0.246
29 0.728
3 0.602
30 0.372
31 0.904
32 0.73
33 0.711
34 0.287
35 0.0806
36 0.723
37 0.437
38 0.9
39 0.706
4 0.951
40 0.274
41 0.00636
42 0.925
43 0.315
44 0.895
45 0.893
46 0.669
47 0.469
48 0.489
49 0.67
5 0.662
50 0.145
51 0.773
52 0.731
53 0.0651
54 0.752
55 0.0403
56 0.751
57 0.872
58 0.516
59 0.0602
6 0.914
60 0.225
61 0.398
62 0.701
63 0.495
64 0.338
65 0.992
66 0.745
67 0.853
68 0.428
69 0.0793
7 0.443
70 0.057
71 0.872
72 0.989
73 0.34
74 0.323
75 0.442
76 0.343
77 0.0518
78 0.173
79 0.924
8 0.545
80 0.326
81 0.96
82 0.203
83 0.123
84 0.431
85 0.683
86 0.707
87 0.201
88 0.496
89 0.311
9 0.926
90 0.743
91 0.339
92 0.421
93 0.328
94 0.766
95 0.244
96 0.581
97 0.683
98 0.708
99 0.168



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs11043


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002369 (adrenal gland)
0002100 (trunk)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0005172 (abdomen element)
0002530 (gland)
0006858 (adrenal/interrenal gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000300 (mouse embryonic day 17 sample)
0011520 (adrenal gland - embryo E17 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)