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{{f5samples
 
{{f5samples
|DRA_sample_Accession=CAGE@DRS008766
+
|DRA_sample_Accession=CAGE@SAMD00005969
|accession_numbers=CAGE;DRX008903;DRR009777;DRZ001202;DRZ002585
+
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005969
 +
|accession_numbers=CAGE;DRX008903;DRR009777;DRZ001202;DRZ002585;DRZ012552;DRZ013935
 +
|accession_numbers_RNASeq=sRNA-Seq;DRX037391;DRR041757;DRZ007366
 
|ancestors_in_anatomy_facet=
 
|ancestors_in_anatomy_facet=
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000764,CL:0000548,CL:0000763,CL:0002371,CL:0002242,CL:0000255,CL:0000765
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000764,CL:0000548,CL:0000763,CL:0002371,CL:0002242,CL:0000255,CL:0000765
Line 9: Line 11:
 
|created_by=
 
|created_by=
 
|creation_date=
 
|creation_date=
|data_phase=1
+
|data_phase=2
|datafreeze_phase=1
+
|datafreeze_phase=2
 
|def=
 
|def=
 +
|donor= biol_rep2
 
|expression_enrichment_score=chr2:28477452..28477483,-!p1@Gfi1b!2.38!294.62!Gfi1b;;chrX:133654667..133654672,-!p1@Esx1!2.18!150.69!Esx1;;chrX:7544943..7545001,-!p1@Gata1!2.15!140.85!Gata1;;chrX:133654344..133654358,-!p2@Esx1!2.03!106.41!Esx1;;chr8:87225670..87225697,+!p2@Lyl1!2.02!290.31!Lyl1;;chr8:87425854..87425891,+!p1@Klf1!1.93!83.65!Klf1;;chr19:5447886..5447905,+!p1@Fosl1!1.87!73.81!Fosl1;;chr6:88148650..88148669,+!p1@Gata2!1.85!553.56!Gata2;;chr15:103082088..103082136,-!p2@Nfe2!1.82!65.81!Nfe2;;chr8:87225702..87225726,+!p3@Lyl1!1.77!115.02!Lyl1;;chr19:5447692..5447711,+!p2@Fosl1!1.74!54.13!Fosl1;;chr15:103085660..103085681,-!p1@Nfe2!1.71!73.81!Nfe2;;chrX:133654245..133654253,-!p3@Esx1!1.64!43.05!Esx1;;chr15:103085690..103085710,-!p3@Nfe2!1.61!43.67!Nfe2;;chr18:35020854..35020869,+!p1@Egr1!1.57!1305.78!Egr1;;chr7:20162663..20162678,+!p1@Zfp296!1.36!28.91!Zfp296;;chr4:134708451..134708469,+!p1@Runx3!1.35!37.52!Runx3;;chr15:103170516..103170531,-!p2@Zfp385a!1.33!47.36!Zfp385a;;chr15:103170533..103170556,-!p1@Zfp385a!1.32!72.58!Zfp385a;;chr11:11584970..11585030,+!p2@Ikzf1!1.26!24.60!Ikzf1;;chr8:124806048..124806094,+!p1@Zfpm1!1.21!135.93!Zfpm1;;chr15:103085802..103085817,-!p4@Nfe2!1.17!17.22!Nfe2;;chr8:124806017..124806040,+!p2@Zfpm1!1.16!147.00!Zfpm1;;chr4:114730254..114730276,+!p2@Tal1!1.16!17.22!Tal1;;chr2:162880387..162880413,+!p1@Mybl2!1.14!79.96!Mybl2;;chr4:135728181..135728203,+!p2@E2f2!1.13!16.61!E2f2;;chr6:88148324..88148328,+!p3@Gata2!1.12!12.30!Gata2;;chr11:101646566..101646603,-!p1@Etv4!1.10!37.52!Etv4;;chr11:102178005..102178022,-!p8@Ubtf!1.07!17.84!Ubtf;;chr4:114732112..114732158,+!p1@Tal1!1.06!23.37!Tal1;;chr4:133801432..133801448,-!p3@Zfp593!1.06!15.99!Zfp593;;chr11:80196900..80196917,+!p3@Zfp207!1.02!31.98!Zfp207;;chr11:102177921..102177960,-!p9@Ubtf!1.01!13.53!Ubtf;;chr6:88143711..88143717,+!p2@Gata2!0.99!14.15!Gata2;;chr18:35020615..35020641,+!p2@Egr1!0.99!10.46!Egr1;;chr15:103085864..103085876,-!p5@Nfe2!0.95!8.00!Nfe2;;chrX:108009761..108009788,+!p1@Pou3f4!0.95!8.00!Pou3f4;;chr19:7342725..7342784,+!p1@Rcor2!0.93!31.98!Rcor2;;chrX:7544928..7544938,-!p2@Gata1!0.92!7.38!Gata1;;chr13:30077847..30077906,-!p1@E2f3!0.91!57.82!E2f3;;chr4:135728581..135728668,+!p1@E2f2!0.90!35.06!E2f2;;chr2:32219200..32219213,+!p5@Ciz1!0.90!9.23!Ciz1;;chr7:17642177..17642223,-!p3@Hif3a!0.89!6.77!Hif3a;;chr7:30094448..30094481,+!p4@Dpf1!0.88!8.00!Dpf1;;chr2:162880327..162880385,+!p2@Mybl2!0.87!45.51!Mybl2;;chr18:74375772..74375799,+!p2@Cxxc1!0.87!19.68!Cxxc1;;chr10:80040030..80040072,-!p1@Klf16!0.84!124.24!Klf16;;chr7:134169762..134169795,-!p3@Maz!0.83!55.36!Maz;;chr11:60036258..60036276,-!p3@Srebf1!0.83!10.46!Srebf1;;chr19:37509324..37509337,+!p1@Hhex!0.82!43.05!Hhex;;chr16:55966407..55966447,+!p6@Rpl24,p6@Zbtb11!0.82!14.15!Zbtb11;;chr4:114730288..114730306,+!p8@Tal1!0.82!5.54!Tal1;;chr6:88143570..88143590,+!p4@Gata2!0.82!5.54!Gata2;;chr15:103085821..103085828,-!p6@Nfe2!0.82!5.54!Nfe2;;chr4:133801453..133801492,-!p1@Zfp593!0.81!48.59!Zfp593;;chr4:133312695..133312709,-!p19@Arid1a!0.81!6.77!Arid1a;;chr11:102177974..102177992,-!p17@Ubtf!0.80!6.77!Ubtf;;chr7:30092993..30093076,+!p1@Dpf1!0.79!9.23!Dpf1;;chr11:101645830..101645881,-!p2@Etv4!0.78!9.84!Etv4;;chr6:145813905..145813932,-!p2@Bhlhe41!0.77!9.84!Bhlhe41;;chr3:32264530..32264544,-!p2@Zmat3!0.77!8.00!Zmat3;;chr12:77278238..77278252,-!p1@Esr2!0.77!4.92!Esr2;;chr16:55966451..55966484,+!p3@Rpl24,p3@Zbtb11!0.76!30.75!Zbtb11;;chr8:72520225..72520248,-!p9@Gatad2a!0.75!13.53!Gatad2a;;chr5:111082367..111082441,-!p1@Noc4l!0.74!116.86!Noc4l;;chr17:27693706..27693724,+!p4@Hmga1,p5@Hmga1-rs1!0.73!11.69!Hmga1;;chr16:4559721..4559747,-!p3@Tfap4!0.73!10.46!Tfap4;;chr11:101646155..101646170,-!p3@Etv4!0.73!5.54!Etv4;;chr11:101646480..101646496,-!p4@Etv4!0.72!5.54!Etv4;;chr7:52962498..52962512,+!p12@Dbp!0.72!4.31!Dbp;;chr17:27693558..27693580,+!p1@Hmga1-rs1,p1@Hmga1!0.71!215.27!Hmga1;;chr2:156666727..156666753,+!p2@Tgif2!0.70!6.15!Tgif2;;chr17:23701084..23701128,-!p1@Zfp213!0.69!20.91!Zfp213;;chr1:74634786..74634804,-!p5@Zfp142!0.69!5.54!Zfp142;;chr8:124806111..124806122,+!p3@Zfpm1!0.69!4.92!Zfpm1;;chr14:47896467..47896523,-!p1@Wdhd1!0.68!52.90!Wdhd1;;chr8:87225329..87225396,+!p1@Lyl1!0.68!15.99!Lyl1;;chr10:41995430..41995458,-!p3@Foxo3!0.68!11.07!Foxo3;;chrX:34443339..34443348,-!p2@Nkrf!0.68!11.07!Nkrf;;chr2:181194069..181194144,-!p1@Zbtb46!0.67!23.99!Zbtb46;;chr7:135020060..135020124,-!p2@Zfp668!0.67!18.45!Zfp668;;chr2:162880418..162880429,+!p4@Mybl2!0.67!4.92!Mybl2;;chr15:103083245..103083260,-!p7@Nfe2!0.67!3.69!Nfe2;;chr15:103170561..103170572,-!p4@Zfp385a!0.66!5.54!Zfp385a;;chr12:85534778..85534812,-!p3@C130039O16Rik!0.65!11.69!C130039O16Rik;;chr16:4559608..4559681,-!p1@Tfap4!0.63!31.98!Tfap4;;chr7:26067619..26067702,+!p2@Cic!0.63!21.53!Cic;;chr4:114729646..114729665,+!p4@Tal1!0.63!4.92!Tal1;;chr8:72520015..72520053,-!p2@Gatad2a!0.62!25.22!Gatad2a;;chr5:140267476..140267493,+!p1@Mafk!0.62!20.91!Mafk;;chr6:145814003..145814056,-!p1@Bhlhe41!0.62!10.46!Bhlhe41;;chr11:1158567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1,+!p3@Tfdp1!0.01!1.23!Tfdp1;;chrX:7339915..7339935,+!p4@Tfe3!0.01!1.23!Tfe3;;chr9:122775126..122775133,-!p3@Zfp445!0.01!0.62!Zfp445;;chr15:25914138..25914146,+!p4@Zfp622!0.01!0.62!Zfp622;;chr15:100382267..100382287,-!p3@Tfcp2!0.01!0.62!Tfcp2;;chr5:31262699..31262712,-!p2@Preb!0.01!0.62!Preb;;chr5:9161608..9161619,-!p3@Dmtf1!0.01!0.62!Dmtf1;;chr5:138188113..138188145,+!p9@Tsc22d4!0.01!0.62!Tsc22d4;;chr11:106993203..106993214,-!p5@Bptf!0.01!0.62!Bptf;;chr2:153067138..153067147,-!p3@Plagl2!0.01!0.62!Plagl2;;chr15:61817095..61817111,+!p1@Myc!0.00!53.51!Myc;;chr5:142877438..142877486,+!p1@Foxk1!0.00!32.60!Foxk1;;chr4:133309876..133309934,-!p1@Arid1a!0.00!24.60!Arid1a;;chr6:140571997..140572136,+!p1@Aebp2!0.00!20.30!Aebp2;;chr15:38230448..38230470,-!p1@Klf10!0.00!18.45!Klf10;;chr7:24866907..24866967,+!p1@LOC676710,p1@Zfp180!0.00!11.07!Zfp180;;chr6:47870583..47870635,+!p1@Zfp212!0.00!10.46!Zfp212;;chr2:37298616..37298698,-!p1@Zbtb26,p2@Zbtb6!0.00!7.38!Zbtb26;;chr1:74634538..74634615,-!p1@Zfp142!0.00!6.77!Zfp142;;chr8:72662999..72663031,-!p1@LOC100048268,p1@Rfxank!0.00!6.77!Rfxank;;chr7:71083428..71083518,-!p3@Klf13!0.00!6.15!Klf13;;chr10:82226649..82226694,-!p2@Nfyb!0.00!4.92!Nfyb;;chr14:65977324..65977372,+!p2@Zfp395!0.00!4.31!Zfp395;;chr19:46379199..46379301,+!p1@Nfkb2!0.00!4.31!Nfkb2;;chr8:72663098..72663160,-!p2@LOC100048268,p2@Rfxank!0.00!3.69!Rfxank;;chr9:20385740..20385777,+!p2@Zfp846!0.00!2.46!Zfp846;;chr4:128483680..128483715,-!p3@Zfp362!0.00!2.46!Zfp362;;chr9:63869850..63869873,-!p2@Smad6!0.00!1.85!Smad6;;chr13:30076280..30076334,-!p3@E2f3!0.00!1.85!E2f3;;chr2:38781916..38781974,-!p1@Nr6a1!0.00!1.85!Nr6a1;;chr5:110539087..110539133,+!p1@Zfp605!0.00!1.85!Zfp605;;chr5:147760331..147760336,+!p5@Gtf3a!0.00!0.62!Gtf3a;;chr9:106356265..106356276,+!p4@Pcbp4!0.00!0.62!Pcbp4;;chr10:5958477..5958503,+!p4@Zbtb2!0.00!0.62!Zbtb2;;chr11:121380640..121380655,-!p1@Zfp750!0.00!0.62!Zfp750;;chr10:82226709..82226720,-!p6@Nfyb!0.00!0.62!Nfyb;;chr5:104183237..104183248,+!p7@Aff1!0.00!0.62!Aff1;;chr2:127347067..127347093,-!p1@Kcnip3!0.00!0.62!Kcnip3;;chr2:127347094..127347111,-!p2@Kcnip3!0.00!0.62!Kcnip3;;chr17:69733108..69733129,+!p3@Zfp161!0.00!0.62!Zfp161;;chr13:67500674..67500700,-!p2@Zfp429!0.00!0.62!Zfp429;;chr13:72766234..72766243,+!p3@Irx2!0.00!0.00!Irx2;;chr13:73397921..73397935,+!p3@Irx4!0.00!0.00!Irx4;;chr14:18814020..18814023,+!p3@Thrb!0.00!0.00!Thrb;;chr14:18493470..18493477,+!p4@Thrb!0.00!0.00!Thrb;;chr14:17408052..17408073,-!p5@Rarb!0.00!0.00!Rarb;;chr14:17408022..17408043,-!p6@Rarb!0.00!0.00!Rarb;;chr14:17407857..17407875,-!p4@Rarb!0.00!0.00!Rarb;;chr14:17407671..17407684,-!p7@Rarb!0.00!0.00!Rarb;;chr14:13178608..13178630,-!p5@Fezf2!0.00!0.00!Fezf2;;chr14:13178361..13178386,-!p2@Fezf2!0.00!0.00!Fezf2;;chr13:73397958..73397994,+!p1@Irx4!0.00!0.00!Irx4;;chr13:73398004..73398017,+!p2@Irx4!0.00!0.00!Irx4;;chr14:13178323..13178347,-!p3@Fezf2!0.00!0.00!Fezf2;;chr14:13178294..13178303,-!p7@Fezf2!0.00!0.00!Fezf2;;chr14:32979005..32979017,+!p7@Gm6768,p7@Ncoa4!0.00!0.00!Ncoa4;;chr14:18814147..18814153,+!p5@Thrb!0.00!0.00!Thrb;;chr13:53568081..53568094,-!p3@Msx2!0.00!0.00!Msx2;;chr13:53568169..53568179,-!p4@Msx2!0.00!0.00!Msx2;;chr13:53568191..53568219,-!p2@Msx2!0.00!0.00!Msx2;;chr14:32978944..32978953,+!p8@Gm6768,p8@Ncoa4!0.00!0.00!Ncoa4;;chr14:27813891..27813902,+!p3@Hesx1!0.00!0.00!Hesx1;;chr13:55932624..55932641,-!p2@Pitx1!0.00!0.00!Pitx1;;chr14:27813852..27813865,+!p1@Hesx1!0.00!0.00!Hesx1;;chr13:55932739..55932756,-!p5@Pitx1!0.00!0.00!Pitx1;;chr13:55937432..55937460,-!p4@Pitx1!0.00!0.00!Pitx1;;chr14:27813679..27813693,+!p2@Hesx1!0.00!0.00!Hesx1;;chr13:55937467..55937516,-!p3@Pitx1!0.00!0.00!Pitx1;;chr14:18814381..18814390,+!p7@Thrb!0.00!0.00!Thrb;;chr13:56353536..56353542,-!p1@Neurog1!0.00!0.00!Neurog1;;chr13:56804798..56804806,+!p7@Smad5!0.00!0.00!Smad5;;chr13:64251414..64251425,-!p13@Zfp367!0.00!0.00!Zfp367;;chr14:18814327..18814334,+!p10@Thrb!0.00!0.00!Thrb;;chr13:78164139..78164148,+!p2@Pou5f2!0.00!0.00!Pou5f2;;chr13:78164153..78164174,+!p1@Pou5f2!0.00!0.00!Pou5f2;;chr13:83643302..83643309,+!p12@Mef2c!0.00!0.00!Mef2c;;chr13:83663500..83663519,+!p8@Mef2c!0.00!0.00!Mef2c;;chr14:122874406..122874413,+!p6@Zic2!0.00!0.00!Zic2;;chr13:83712735..83712761,+!p9@Mef2c!0.00!0.00!Mef2c;;chr14:122874356..122874371,+!p4@Zic2!0.00!0.00!Zic2;;chr14:122864676..122864708,-!p1@Zic5!0.00!0.00!Zic5;;chr13:93346120..93346155,-!p1@Spz1!0.00!0.00!Spz1;;
 
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1,+!p3@Tfdp1!0.01!1.23!Tfdp1;;chrX:7339915..7339935,+!p4@Tfe3!0.01!1.23!Tfe3;;chr9:122775126..122775133,-!p3@Zfp445!0.01!0.62!Zfp445;;chr15:25914138..25914146,+!p4@Zfp622!0.01!0.62!Zfp622;;chr15:100382267..100382287,-!p3@Tfcp2!0.01!0.62!Tfcp2;;chr5:31262699..31262712,-!p2@Preb!0.01!0.62!Preb;;chr5:9161608..9161619,-!p3@Dmtf1!0.01!0.62!Dmtf1;;chr5:138188113..138188145,+!p9@Tsc22d4!0.01!0.62!Tsc22d4;;chr11:106993203..106993214,-!p5@Bptf!0.01!0.62!Bptf;;chr2:153067138..153067147,-!p3@Plagl2!0.01!0.62!Plagl2;;chr15:61817095..61817111,+!p1@Myc!0.00!53.51!Myc;;chr5:142877438..142877486,+!p1@Foxk1!0.00!32.60!Foxk1;;chr4:133309876..133309934,-!p1@Arid1a!0.00!24.60!Arid1a;;chr6:140571997..140572136,+!p1@Aebp2!0.00!20.30!Aebp2;;chr15:38230448..38230470,-!p1@Klf10!0.00!18.45!Klf10;;chr7:24866907..24866967,+!p1@LOC676710,p1@Zfp180!0.00!11.07!Zfp180;;chr6:47870583..47870635,+!p1@Zfp212!0.00!10.46!Zfp212;;chr2:37298616..37298698,-!p1@Zbtb26,p2@Zbtb6!0.00!7.38!Zbtb26;;chr1:74634538..74634615,-!p1@Zfp142!0.00!6.77!Zfp142;;chr8:72662999..72663031,-!p1@LOC100048268,p1@Rfxank!0.00!6.77!Rfxank;;chr7:71083428..71083518,-!p3@Klf13!0.00!6.15!Klf13;;chr10:82226649..82226694,-!p2@Nfyb!0.00!4.92!Nfyb;;chr14:65977324..65977372,+!p2@Zfp395!0.00!4.31!Zfp395;;chr19:46379199..46379301,+!p1@Nfkb2!0.00!4.31!Nfkb2;;chr8:72663098..72663160,-!p2@LOC100048268,p2@Rfxank!0.00!3.69!Rfxank;;chr9:20385740..20385777,+!p2@Zfp846!0.00!2.46!Zfp846;;chr4:128483680..128483715,-!p3@Zfp362!0.00!2.46!Zfp362;;chr9:63869850..63869873,-!p2@Smad6!0.00!1.85!Smad6;;chr13:30076280..30076334,-!p3@E2f3!0.00!1.85!E2f3;;chr2:38781916..38781974,-!p1@Nr6a1!0.00!1.85!Nr6a1;;chr5:110539087..110539133,+!p1@Zfp605!0.00!1.85!Zfp605;;chr5:147760331..147760336,+!p5@Gtf3a!0.00!0.62!Gtf3a;;chr9:106356265..106356276,+!p4@Pcbp4!0.00!0.62!Pcbp4;;chr10:5958477..5958503,+!p4@Zbtb2!0.00!0.62!Zbtb2;;chr11:121380640..121380655,-!p1@Zfp750!0.00!0.62!Zfp750;;chr10:82226709..82226720,-!p6@Nfyb!0.00!0.62!Nfyb;;chr5:104183237..104183248,+!p7@Aff1!0.00!0.62!Aff1;;chr2:127347067..127347093,-!p1@Kcnip3!0.00!0.62!Kcnip3;;chr2:127347094..127347111,-!p2@Kcnip3!0.00!0.62!Kcnip3;;chr17:69733108..69733129,+!p3@Zfp161!0.00!0.62!Zfp161;;chr13:67500674..67500700,-!p2@Zfp429!0.00!0.62!Zfp429;;chr13:72766234..72766243,+!p3@Irx2!0.00!0.00!Irx2;;chr13:73397921..73397935,+!p3@Irx4!0.00!0.00!Irx4;;chr14:18814020..18814023,+!p3@Thrb!0.00!0.00!Thrb;;chr14:18493470..18493477,+!p4@Thrb!0.00!0.00!Thrb;;chr14:17408052..17408073,-!p5@Rarb!0.00!0.00!Rarb;;chr14:17408022..17408043,-!p6@Rarb!0.00!0.00!Rarb;;chr14:17407857..17407875,-!p4@Rarb!0.00!0.00!Rarb;;chr14:17407671..17407684,-!p7@Rarb!0.00!0.00!Rarb;;chr14:13178608..13178630,-!p5@Fezf2!0.00!0.00!Fezf2;;chr14:13178361..13178386,-!p2@Fezf2!0.00!0.00!Fezf2;;chr13:73397958..73397994,+!p1@Irx4!0.00!0.00!Irx4;;chr13:73398004..73398017,+!p2@Irx4!0.00!0.00!Irx4;;chr14:13178323..13178347,-!p3@Fezf2!0.00!0.00!Fezf2;;chr14:13178294..13178303,-!p7@Fezf2!0.00!0.00!Fezf2;;chr14:32979005..32979017,+!p7@Gm6768,p7@Ncoa4!0.00!0.00!Ncoa4;;chr14:18814147..18814153,+!p5@Thrb!0.00!0.00!Thrb;;chr13:53568081..53568094,-!p3@Msx2!0.00!0.00!Msx2;;chr13:53568169..53568179,-!p4@Msx2!0.00!0.00!Msx2;;chr13:53568191..53568219,-!p2@Msx2!0.00!0.00!Msx2;;chr14:32978944..32978953,+!p8@Gm6768,p8@Ncoa4!0.00!0.00!Ncoa4;;chr14:27813891..27813902,+!p3@Hesx1!0.00!0.00!Hesx1;;chr13:55932624..55932641,-!p2@Pitx1!0.00!0.00!Pitx1;;chr14:27813852..27813865,+!p1@Hesx1!0.00!0.00!Hesx1;;chr13:55932739..55932756,-!p5@Pitx1!0.00!0.00!Pitx1;;chr13:55937432..55937460,-!p4@Pitx1!0.00!0.00!Pitx1;;chr14:27813679..27813693,+!p2@Hesx1!0.00!0.00!Hesx1;;chr13:55937467..55937516,-!p3@Pitx1!0.00!0.00!Pitx1;;chr14:18814381..18814390,+!p7@Thrb!0.00!0.00!Thrb;;chr13:56353536..56353542,-!p1@Neurog1!0.00!0.00!Neurog1;;chr13:56804798..56804806,+!p7@Smad5!0.00!0.00!Smad5;;chr13:64251414..64251425,-!p13@Zfp367!0.00!0.00!Zfp367;;chr14:18814327..18814334,+!p10@Thrb!0.00!0.00!Thrb;;chr13:78164139..78164148,+!p2@Pou5f2!0.00!0.00!Pou5f2;;chr13:78164153..78164174,+!p1@Pou5f2!0.00!0.00!Pou5f2;;chr13:83643302..83643309,+!p12@Mef2c!0.00!0.00!Mef2c;;chr13:83663500..83663519,+!p8@Mef2c!0.00!0.00!Mef2c;;chr14:122874406..122874413,+!p6@Zic2!0.00!0.00!Zic2;;chr13:83712735..83712761,+!p9@Mef2c!0.00!0.00!Mef2c;;chr14:122874356..122874371,+!p4@Zic2!0.00!0.00!Zic2;;chr14:122864676..122864708,-!p1@Zic5!0.00!0.00!Zic5;;chr13:93346120..93346155,-!p1@Spz1!0.00!0.00!Spz1;;
 
|ffid_belonging_in_development=CL:0000049,CL:0000134
 
|ffid_belonging_in_development=CL:0000049,CL:0000134
Line 45: Line 48:
 
|is_obsolete=
 
|is_obsolete=
 
|library_id=CNhs12668
 
|library_id=CNhs12668
|library_id_phase_based=1:CNhs12668
+
|library_id_phase_based=2:CNhs12668
|name=J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2
+
|microRNAs=
 +
|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;13129
 +
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/mouse#srna;sample;SRhi10062.CGATGT.13129
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;13129
 +
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/mouse#srna;sample;SRhi10062.CGATGT.13129
 +
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.timecourse.hCAGE/J2E%2520erythroblastic%2520leukemia%2520response%2520to%2520erythropoietin%252c%252000hr00min%252c%2520biol_rep2.CNhs12668.13129-140G6.mm10.nobarcode.bam
 +
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.timecourse.hCAGE/J2E%2520erythroblastic%2520leukemia%2520response%2520to%2520erythropoietin%252c%252000hr00min%252c%2520biol_rep2.CNhs12668.13129-140G6.mm10.nobarcode.ctss.bed.gz
 +
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.timecourse.hCAGE/J2E%2520erythroblastic%2520leukemia%2520response%2520to%2520erythropoietin%252c%252000hr00min%252c%2520biol_rep2.CNhs12668.13129-140G6.mm9.nobarcode.bam
 +
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.timecourse.hCAGE/J2E%2520erythroblastic%2520leukemia%2520response%2520to%2520erythropoietin%252c%252000hr00min%252c%2520biol_rep2.CNhs12668.13129-140G6.mm9.ctss.bed.gz
 +
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.timecourse.hCAGE/J2E%2520erythroblastic%2520leukemia%2520response%2520to%2520erythropoietin%252c%252000hr00min%252c%2520biol_rep2.CNhs12668.13129-140G6.mm9.nobarcode.rdna.fa.gz
 +
|name=J2E erythroblastic leukemia response to erythropoietin
 
|namespace=FANTOM5
 
|namespace=FANTOM5
 
|part_of=
 
|part_of=
 
|profile_cagescan=,,,
 
|profile_cagescan=,,,
 
|profile_hcage=CNhs12668,LSID953,release011,COMPLETED
 
|profile_hcage=CNhs12668,LSID953,release011,COMPLETED
|profile_rnaseq=,,,
+
|profile_rnaseq=
 
|profile_srnaseq=,,,
 
|profile_srnaseq=,,,
 
|repeat_enrich_byfamily=-0.11779559634038,0,0,0,0,0,-0.853129147291671,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,-0.191893350882575,0,0,0,0,0,0,0,0,0,0,0,0,0.83127052260206,-0.350232843783153,0,0.671208837245349,0,0,-0.0659153433706589,-0.105227751225387,-0.180800839500318,-0.0199225264639189,-0.984211366477826,-0.269868638010351,1.05903684857947,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,0,0,-0.130696565450787,0,0,-0.0742309351586685,-0.243225778194271,-0.310650657339386,-0.158091042771083,-0.0365927089968535,0,-0.0780086007519514,-0.194740515512231,-0.0224105764210457,0,0,-0.174847961794519,-0.222781109139009,0.897378268660033,-0.0788315948399074,0,0,0,0,0,0,0.42075060611118,0.772489622410725,0.645895286000094,0,0,0,0.674474643887282,0
 
|repeat_enrich_byfamily=-0.11779559634038,0,0,0,0,0,-0.853129147291671,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,-0.191893350882575,0,0,0,0,0,0,0,0,0,0,0,0,0.83127052260206,-0.350232843783153,0,0.671208837245349,0,0,-0.0659153433706589,-0.105227751225387,-0.180800839500318,-0.0199225264639189,-0.984211366477826,-0.269868638010351,1.05903684857947,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,0,0,-0.130696565450787,0,0,-0.0742309351586685,-0.243225778194271,-0.310650657339386,-0.158091042771083,-0.0365927089968535,0,-0.0780086007519514,-0.194740515512231,-0.0224105764210457,0,0,-0.174847961794519,-0.222781109139009,0.897378268660033,-0.0788315948399074,0,0,0,0,0,0,0.42075060611118,0.772489622410725,0.645895286000094,0,0,0,0.674474643887282,0
 
|rna_box=140
 
|rna_box=140
 
|rna_catalog_number=
 
|rna_catalog_number=
|rna_concentration=2.40
+
|rna_concentration=2.4
 
|rna_extraction_protocol=Repurified by minelute
 
|rna_extraction_protocol=Repurified by minelute
 
|rna_lot_number=
 
|rna_lot_number=
Line 66: Line 80:
 
|rna_tube_id=140G6
 
|rna_tube_id=140G6
 
|rna_weight_ug=23.98
 
|rna_weight_ug=23.98
 +
|rnaseq_library_id=SRhi10062.CGATGT
 
|sample_age=
 
|sample_age=
 
|sample_category=time courses
 
|sample_category=time courses
Line 86: Line 101:
 
|sample_strain=
 
|sample_strain=
 
|sample_tissue=blood
 
|sample_tissue=blood
|timecourse=Erythropoiesis_J2E
+
|time= 00hr00min
 +
|timecourse=J2E_erythrocytic_differentiation_(EPO)
 
|top_motifs=HES1:2.8971653538;bHLH_family:2.87529013893;ELK1,4_GABP{A,B1}:2.41458747975;STAT5{A,B}:1.98421733256;POU2F1..3:1.7514138729;YY1:1.72087112653;NFE2:1.67610376323;ZNF143:1.58308874944;PAX8:1.54355933307;GATA6:1.52878360404;E2F1..5:1.50529389141;NFY{A,B,C}:1.40647504782;MYB:1.20665326801;STAT1,3:1.16680436408;HOXA9_MEIS1:1.14512665383;NFE2L1:1.11524584417;HIF1A:0.976151680859;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.968589048511;PPARG:0.952157967871;PAX2:0.949771699411;PAX1,9:0.92001992489;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.891899566571;ATF4:0.845418552873;BACH2:0.738694840323;NR5A1,2:0.671736610063;NRF1:0.616821052087;AIRE:0.598209094862;NR1H4:0.588396813012;AHR_ARNT_ARNT2:0.498470328071;AR:0.472291493474;PBX1:0.434427261807;SOX{8,9,10}:0.419632541953;NFE2L2:0.368469136101;CEBPA,B_DDIT3:0.362329312266;ATF5_CREB3:0.308249722256;PITX1..3:0.285261598355;ZIC1..3:0.281796295124;NANOG:0.278758173326;SOX17:0.275912678167;TP53:0.254525009805;POU6F1:0.21772070849;HLF:0.209386512714;ARID5B:0.166893265991;ELF1,2,4:0.162322222375;FOXL1:0.133693322117;NR6A1:0.105817188035;ALX4:0.0998176579402;ESRRA:0.0571045751077;POU3F1..4:0.0401970080065;OCT4_SOX2{dimer}:0.0382022655995;UFEwm:0.025185580522;ZNF423:0.0182229786576;SPIB:0.0166121117479;TLX2:0.00606906806229;TAL1_TCF{3,4,12}:0.00401473361246;FOX{F1,F2,J1}:-0.01211734003;RUNX1..3:-0.0169949571747;RFX2..5_RFXANK_RFXAP:-0.0249823382381;NFIL3:-0.0540663270258;BREu{core}:-0.0550957933868;ZBTB16:-0.0633028480522;GCM1,2:-0.0644027747676;NFKB1_REL_RELA:-0.064784211481;HOX{A5,B5}:-0.0703446905043;HOX{A4,D4}:-0.0854267507583;EN1,2:-0.0897024186013;RFX1:-0.102189877741;RORA:-0.112177539124;NFIX:-0.118431555769;ALX1:-0.1239128265;RXRA_VDR{dimer}:-0.149760251257;CRX:-0.150023084928;PDX1:-0.216003334055;TFDP1:-0.229852385419;FOS_FOS{B,L1}_JUN{B,D}:-0.248034127477;SPI1:-0.255227730633;IKZF1:-0.282718440994;GFI1:-0.291681934355;ZNF148:-0.310804049706;FOXQ1:-0.324249782323;RXR{A,B,G}:-0.325743721625;HNF4A_NR2F1,2:-0.348492822596;EP300:-0.370998531524;PRRX1,2:-0.38677427543;ZNF384:-0.387931416998;ONECUT1,2:-0.388014938027;MEF2{A,B,C,D}:-0.388605939788;ETS1,2:-0.395291372189;GLI1..3:-0.431162744255;VSX1,2:-0.455104969517;EGR1..3:-0.492004195045;NKX6-1,2:-0.522399700609;LEF1_TCF7_TCF7L1,2:-0.52279649756;ZEB1:-0.531401017082;HNF1A:-0.537597154006;JUN:-0.552675357564;LMO2:-0.555480427576;FOX{I1,J2}:-0.568224733372;POU5F1:-0.603041198056;HSF1,2:-0.603218953538;SPZ1:-0.61400471722;TBX4,5:-0.620604991061;ADNP_IRX_SIX_ZHX:-0.632594436584;FOSL2:-0.642199303446;REST:-0.656541587156;SREBF1,2:-0.666172979934;PAX6:-0.682200270039;BPTF:-0.683044966194;SNAI1..3:-0.699274529494;TEF:-0.703779402204;SRF:-0.705143121726;GTF2A1,2:-0.721187934401;ZFP161:-0.779091173994;SOX2:-0.792018335804;MAFB:-0.793623567188;CREB1:-0.813164263749;EBF1:-0.8145304483;FOXA2:-0.815114827796;TBP:-0.820149353094;NKX2-3_NKX2-5:-0.836645212191;LHX3,4:-0.849144383715;ATF2:-0.861301079999;NKX2-2,8:-0.874385962278;CUX2:-0.880296473248;FOXD3:-0.89702438074;HMX1:-0.901700154416;ZNF238:-0.930338275776;FOXN1:-0.95108271196;NR3C1:-0.961158142239;TFAP2{A,C}:-0.979994457253;MYOD1:-0.99868391592;TOPORS:-1.01146792757;ESR1:-1.04451850997;KLF4:-1.06722334864;TGIF1:-1.0972645655;ZBTB6:-1.09792655804;DMAP1_NCOR{1,2}_SMARC:-1.11283547483;TEAD1:-1.11578804771;MZF1:-1.12918024959;FOX{D1,D2}:-1.13375716115;STAT2,4,6:-1.1395211666;IRF1,2:-1.14147655416;DBP:-1.15113993401;FOXO1,3,4:-1.1845344894;T:-1.18973467666;GZF1:-1.19461129164;RBPJ:-1.20297385844;TFAP4:-1.22516891616;NANOG{mouse}:-1.25467940184;NHLH1,2:-1.26671589879;RREB1:-1.27493046213;MED-1{core}:-1.2754069064;SMAD1..7,9:-1.2997503206;EVI1:-1.30833267139;HIC1:-1.31386715749;IRF7:-1.32235038064;NKX2-1,4:-1.32502540904;FOXP3:-1.34542110427;NFATC1..3:-1.35759775428;NKX3-2:-1.3613841291;FOXM1:-1.36370168222;GFI1B:-1.38598860513;ATF6:-1.40228263475;NKX3-1:-1.41019457984;HAND1,2:-1.43977599328;TLX1..3_NFIC{dimer}:-1.47232286621;PAX4:-1.51998389473;GATA4:-1.55119317109;GTF2I:-1.58277502206;TFCP2:-1.58606425825;PRDM1:-1.59367091894;PATZ1:-1.63627555198;CDC5L:-1.66650421877;FOXP1:-1.69864364574;MTE{core}:-1.74881585241;XCPE1{core}:-1.76455047337;IKZF2:-1.78954507876;POU1F1:-1.79506350917;MYFfamily:-1.81312140452;TFAP2B:-1.87004327421;MYBL2:-1.89070932507;SOX5:-1.907793247;HBP1_HMGB_SSRP1_UBTF:-1.93582950512;MTF1:-1.9838406288;PAX5:-2.07154517752;HMGA1,2:-2.08108427001;SP1:-2.23378916729;CDX1,2,4:-2.27076539983;MAZ:-2.28477665682
 
|top_motifs=HES1:2.8971653538;bHLH_family:2.87529013893;ELK1,4_GABP{A,B1}:2.41458747975;STAT5{A,B}:1.98421733256;POU2F1..3:1.7514138729;YY1:1.72087112653;NFE2:1.67610376323;ZNF143:1.58308874944;PAX8:1.54355933307;GATA6:1.52878360404;E2F1..5:1.50529389141;NFY{A,B,C}:1.40647504782;MYB:1.20665326801;STAT1,3:1.16680436408;HOXA9_MEIS1:1.14512665383;NFE2L1:1.11524584417;HIF1A:0.976151680859;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.968589048511;PPARG:0.952157967871;PAX2:0.949771699411;PAX1,9:0.92001992489;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.891899566571;ATF4:0.845418552873;BACH2:0.738694840323;NR5A1,2:0.671736610063;NRF1:0.616821052087;AIRE:0.598209094862;NR1H4:0.588396813012;AHR_ARNT_ARNT2:0.498470328071;AR:0.472291493474;PBX1:0.434427261807;SOX{8,9,10}:0.419632541953;NFE2L2:0.368469136101;CEBPA,B_DDIT3:0.362329312266;ATF5_CREB3:0.308249722256;PITX1..3:0.285261598355;ZIC1..3:0.281796295124;NANOG:0.278758173326;SOX17:0.275912678167;TP53:0.254525009805;POU6F1:0.21772070849;HLF:0.209386512714;ARID5B:0.166893265991;ELF1,2,4:0.162322222375;FOXL1:0.133693322117;NR6A1:0.105817188035;ALX4:0.0998176579402;ESRRA:0.0571045751077;POU3F1..4:0.0401970080065;OCT4_SOX2{dimer}:0.0382022655995;UFEwm:0.025185580522;ZNF423:0.0182229786576;SPIB:0.0166121117479;TLX2:0.00606906806229;TAL1_TCF{3,4,12}:0.00401473361246;FOX{F1,F2,J1}:-0.01211734003;RUNX1..3:-0.0169949571747;RFX2..5_RFXANK_RFXAP:-0.0249823382381;NFIL3:-0.0540663270258;BREu{core}:-0.0550957933868;ZBTB16:-0.0633028480522;GCM1,2:-0.0644027747676;NFKB1_REL_RELA:-0.064784211481;HOX{A5,B5}:-0.0703446905043;HOX{A4,D4}:-0.0854267507583;EN1,2:-0.0897024186013;RFX1:-0.102189877741;RORA:-0.112177539124;NFIX:-0.118431555769;ALX1:-0.1239128265;RXRA_VDR{dimer}:-0.149760251257;CRX:-0.150023084928;PDX1:-0.216003334055;TFDP1:-0.229852385419;FOS_FOS{B,L1}_JUN{B,D}:-0.248034127477;SPI1:-0.255227730633;IKZF1:-0.282718440994;GFI1:-0.291681934355;ZNF148:-0.310804049706;FOXQ1:-0.324249782323;RXR{A,B,G}:-0.325743721625;HNF4A_NR2F1,2:-0.348492822596;EP300:-0.370998531524;PRRX1,2:-0.38677427543;ZNF384:-0.387931416998;ONECUT1,2:-0.388014938027;MEF2{A,B,C,D}:-0.388605939788;ETS1,2:-0.395291372189;GLI1..3:-0.431162744255;VSX1,2:-0.455104969517;EGR1..3:-0.492004195045;NKX6-1,2:-0.522399700609;LEF1_TCF7_TCF7L1,2:-0.52279649756;ZEB1:-0.531401017082;HNF1A:-0.537597154006;JUN:-0.552675357564;LMO2:-0.555480427576;FOX{I1,J2}:-0.568224733372;POU5F1:-0.603041198056;HSF1,2:-0.603218953538;SPZ1:-0.61400471722;TBX4,5:-0.620604991061;ADNP_IRX_SIX_ZHX:-0.632594436584;FOSL2:-0.642199303446;REST:-0.656541587156;SREBF1,2:-0.666172979934;PAX6:-0.682200270039;BPTF:-0.683044966194;SNAI1..3:-0.699274529494;TEF:-0.703779402204;SRF:-0.705143121726;GTF2A1,2:-0.721187934401;ZFP161:-0.779091173994;SOX2:-0.792018335804;MAFB:-0.793623567188;CREB1:-0.813164263749;EBF1:-0.8145304483;FOXA2:-0.815114827796;TBP:-0.820149353094;NKX2-3_NKX2-5:-0.836645212191;LHX3,4:-0.849144383715;ATF2:-0.861301079999;NKX2-2,8:-0.874385962278;CUX2:-0.880296473248;FOXD3:-0.89702438074;HMX1:-0.901700154416;ZNF238:-0.930338275776;FOXN1:-0.95108271196;NR3C1:-0.961158142239;TFAP2{A,C}:-0.979994457253;MYOD1:-0.99868391592;TOPORS:-1.01146792757;ESR1:-1.04451850997;KLF4:-1.06722334864;TGIF1:-1.0972645655;ZBTB6:-1.09792655804;DMAP1_NCOR{1,2}_SMARC:-1.11283547483;TEAD1:-1.11578804771;MZF1:-1.12918024959;FOX{D1,D2}:-1.13375716115;STAT2,4,6:-1.1395211666;IRF1,2:-1.14147655416;DBP:-1.15113993401;FOXO1,3,4:-1.1845344894;T:-1.18973467666;GZF1:-1.19461129164;RBPJ:-1.20297385844;TFAP4:-1.22516891616;NANOG{mouse}:-1.25467940184;NHLH1,2:-1.26671589879;RREB1:-1.27493046213;MED-1{core}:-1.2754069064;SMAD1..7,9:-1.2997503206;EVI1:-1.30833267139;HIC1:-1.31386715749;IRF7:-1.32235038064;NKX2-1,4:-1.32502540904;FOXP3:-1.34542110427;NFATC1..3:-1.35759775428;NKX3-2:-1.3613841291;FOXM1:-1.36370168222;GFI1B:-1.38598860513;ATF6:-1.40228263475;NKX3-1:-1.41019457984;HAND1,2:-1.43977599328;TLX1..3_NFIC{dimer}:-1.47232286621;PAX4:-1.51998389473;GATA4:-1.55119317109;GTF2I:-1.58277502206;TFCP2:-1.58606425825;PRDM1:-1.59367091894;PATZ1:-1.63627555198;CDC5L:-1.66650421877;FOXP1:-1.69864364574;MTE{core}:-1.74881585241;XCPE1{core}:-1.76455047337;IKZF2:-1.78954507876;POU1F1:-1.79506350917;MYFfamily:-1.81312140452;TFAP2B:-1.87004327421;MYBL2:-1.89070932507;SOX5:-1.907793247;HBP1_HMGB_SSRP1_UBTF:-1.93582950512;MTF1:-1.9838406288;PAX5:-2.07154517752;HMGA1,2:-2.08108427001;SP1:-2.23378916729;CDX1,2,4:-2.27076539983;MAZ:-2.28477665682
 
|xref=
 
|xref=
 
}}
 
}}

Latest revision as of 06:59, 17 October 2017


Name:J2E erythroblastic leukemia response to erythropoietin
Species:Mouse (Mus musculus)
Library ID:CNhs12668
Sample type:time courses
Genomic View: UCSC
MicroRNAs:Including candidate novel miRNAs(CAGE samplessRNA samples)
Excluding candidate novel miRNAs(CAGE samplessRNA samples)
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexNA
ageNA
cell typeerythroblast
cell lineJ2E
companyNA
collaborationPeter Klinken (Western Australian Institute of Medical Research)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)Repurified by minelute

Accession numbers
MethodSample accession id
CAGE  SAMD00005969
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12668 CAGE DRX008903 DRR009777
Accession ID Mm9

Library idBAMCTSS
CNhs12668 DRZ001202 DRZ002585
Accession ID Mm10

Library idBAMCTSS
CNhs12668 DRZ012552 DRZ013935
Download raw sequence, BAM & CTSS
Mm9
FastaBAMCTSS
downloaddownloaddonwload
Mm10
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005969
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10062.CGATGT sRNA-Seq DRX037391 DRR041757
Accession ID Mm9

Library idBAMCTSS
SRhi10062.CGATGT DRZ007366


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

CNhs12668

MCL coexpression id Coexpression dpi cluster scores median value
0 0
1 0
10 0
100 0
1000 --0.0355
1001 --0.0749
1002 --0.116
1003 --0.0596
1004 0
1005 --0.771
1006 --0.143
1007 --0.0904
1008 0
1009 --0.2
101 0.161
1010 0
1011 0
1012 0
1013 --0.205
1014 --0.0874
1015 0.0483
1016 --0.471
1017 0
1018 0
1019 0
102 0
1020 1.353
1021 1.261
1022 --0.0831
1023 0
1024 --0.14
1025 --0.0611
1026 0
1027 --0.048
1028 0
1029 --0.176
103 --0.0887
1030 0
1031 --0.911
1032 --0.392
1033 0.725
1034 0
1035 0
1036 0.921
1037 0
1038 --0.425
1039 --0.282
104 0
1040 --0.893
1041 0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs12668

Jaspar motif P-value
MA0002.2 0.103
MA0003.1 0.798
MA0004.1 0.0159
MA0006.1 0.271
MA0007.1 0.262
MA0009.1 0.636
MA0014.1 0.955
MA0017.1 0.14
MA0018.2 0.233
MA0019.1 0.962
MA0024.1 3.67261e-5
MA0025.1 0.553
MA0027.1 0.48
MA0028.1 2.2894e-7
MA0029.1 0.431
MA0030.1 0.315
MA0031.1 0.0548
MA0035.2 7.04571e-14
MA0038.1 0.0021
MA0039.2 0.756
MA0040.1 0.622
MA0041.1 0.21
MA0042.1 0.46
MA0043.1 0.0652
MA0046.1 3.22315e-4
MA0047.2 0.759
MA0048.1 0.0186
MA0050.1 0.00164
MA0051.1 0.0143
MA0052.1 0.0301
MA0055.1 2.18866e-4
MA0057.1 0.579
MA0058.1 0.00907
MA0059.1 1.93555e-4
MA0060.1 9.32862e-4
MA0061.1 0.492
MA0062.2 5.63626e-10
MA0065.2 0.00555
MA0066.1 0.312
MA0067.1 0.87
MA0068.1 0.00515
MA0069.1 0.389
MA0070.1 0.514
MA0071.1 0.0451
MA0072.1 0.845
MA0073.1 0.841
MA0074.1 0.126
MA0076.1 1.61215e-9
MA0077.1 0.431
MA0078.1 0.187
MA0079.2 0.0429
MA0080.2 0.296
MA0081.1 0.0746
MA0083.1 0.0247
MA0084.1 0.443
MA0087.1 0.818
MA0088.1 0.00937
MA0090.1 0.334
MA0091.1 0.286
MA0092.1 0.651
MA0093.1 0.0167
MA0099.2 0.0521
MA0100.1 0.0096
MA0101.1 0.419
MA0102.2 0.0893
MA0103.1 0.469
MA0104.2 1.45087e-4
MA0105.1 0.00839
MA0106.1 0.0828
MA0107.1 0.716
MA0108.2 0.00131
MA0111.1 0.917
MA0112.2 0.0845
MA0113.1 0.472
MA0114.1 0.116
MA0115.1 0.015
MA0116.1 0.00849
MA0117.1 0.645
MA0119.1 0.7
MA0122.1 0.906
MA0124.1 0.702
MA0125.1 0.795
MA0131.1 0.394
MA0135.1 0.28
MA0136.1 3.71292e-5
MA0137.2 0.0267
MA0138.2 0.123
MA0139.1 0.369
MA0140.1 1.5309e-20
MA0141.1 0.00806
MA0142.1 0.366
MA0143.1 0.376
MA0144.1 0.279
MA0145.1 0.589
MA0146.1 0.0911
MA0147.1 1.94651e-5
MA0148.1 0.761
MA0149.1 0.00501
MA0150.1 0.0197
MA0152.1 0.188
MA0153.1 0.0718
MA0154.1 0.174
MA0155.1 0.587
MA0156.1 6.78612e-5
MA0157.1 0.02
MA0159.1 0.019
MA0160.1 0.0128
MA0162.1 0.952
MA0163.1 2.4565e-4
MA0164.1 0.403
MA0258.1 0.16
MA0259.1 0.0188



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs12668

Novel motif P-value
1 0.087
10 0.024
100 0.0475
101 0.481
102 0.36
103 0.086
104 0.639
105 0.898
106 0.809
107 0.314
108 0.642
109 0.0305
11 0.129
110 0.0248
111 0.00882
112 0.286
113 0.27
114 0.366
115 0.802
116 0.324
117 1.8708e-4
118 0.354
119 0.211
12 0.611
120 0.26
121 0.793
122 0.697
123 0.429
124 0.0403
125 0.00326
126 0.0975
127 0.0951
128 0.512
129 0.867
13 0.00763
130 0.54
131 0.208
132 0.339
133 0.414
134 0.0762
135 0.276
136 0.301
137 0.915
138 0.486
139 0.849
14 0.578
140 0.939
141 0.775
142 0.256
143 0.546
144 0.944
145 0.0435
146 0.757
147 0.829
148 0.247
149 0.106
15 0.122
150 0.272
151 0.996
152 0.418
153 0.656
154 0.987
155 0.636
156 0.488
157 0.508
158 0.00253
159 0.702
160 0.686
161 0.328
162 0.753
163 0.753
164 0.0343
165 0.936
166 0.0755
167 0.241
168 0.776
169 0.192
17 0.73
18 0.0575
19 0.762
2 0.156
20 0.00357
21 0.219
22 0.751
23 0.735
24 0.331
25 0.261
26 0.0135
27 0.787
28 0.921
29 0.00112
3 0.0931
30 0.339
31 0.891
32 0.719
33 0.0999
34 0.958
35 0.302
36 0.0106
37 0.245
38 0.451
39 0.763
4 0.433
40 0.112
41 0.0628
42 0.193
43 0.668
44 0.165
45 0.605
46 0.182
47 0.221
48 0.196
49 0.429
5 0.264
50 0.941
51 0.976
52 0.13
53 0.402
54 0.634
55 0.0342
56 0.98
57 0.141
58 0.791
59 0.735
6 0.858
60 0.845
61 0.589
62 0.309
63 0.581
64 0.392
65 0.611
66 0.164
67 0.18
68 0.624
69 0.728
7 0.15
70 0.0227
71 0.00366
72 0.659
73 0.258
74 0.549
75 0.0292
76 0.115
77 0.821
78 0.0642
79 0.743
8 0.0378
80 0.642
81 0.944
82 0.885
83 0.854
84 0.558
85 0.775
86 0.258
87 0.171
88 0.629
89 0.472
9 0.678
90 0.00967
91 0.794
92 0.939
93 0.19
94 0.234
95 0.0172
96 0.206
97 0.966
98 0.282
99 0.691



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs12668


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000764 (erythroid lineage cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000765 (erythroblast)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0100737 (leukemia cell line sample)
0000401 (erythroblastic leukemia cell line sample)
0000350 (experimentally modified sample)
0000344 (0 minute sample)
0000337 (erythropoietin treatment sample)
0000403 (mouse J2E erythroblastic leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0000498 (mouse J2E erythroblastic leukemia line 0min after treatment with erythropoietin sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)