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FF:1531-43D7

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Name:pancreas, neonate N01
Species:Mouse (Mus musculus)
Library ID:{{{library_id}}}
Sample type:{{{sample_category}}}
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainC57BL/6J
tissuepancreas
dev stage1 day neonate
sexmixture
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA
Download raw sequence, BAM & CTSS
Mm9
BAMCTSS
[{{{mm9bam}}} download][{{{mm9ctss}}} donwload]
Mm10
BAMCTSS
[{{{mm10bam}}} download][{{{mm10ctss}}} donwload]





Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

CNhs11138

MCL coexpression id Coexpression dpi cluster scores median value
0 0
1 0
10 0
100 0
1000 0
1001 0.0187
1002 --0.00154
1003 3.496738e-4
1004 0
1005 0
1006 --0.00402
1007 0.0926
1008 0
1009 0.12
101 0.0501
1010 0.39
1011 5.634715e-4
1012 0
1013 0.306
1014 0.39
1015 0.0957
1016 --0.0484
1017 0
1018 0
1019 0
102 0
1020 0
1021 0
1022 0.331
1023 0
1024 0.137
1025 0.135
1026 0.135
1027 0
1028 0
1029 --0.013
103 0.242
1030 0
1031 0.241
1032 0.0679
1033 0.0561
1034 0.39
1035 0.135
1036 0.113
1037 0
1038 0.0265
1039 0.0218
104 0
1040 0.0217
1041 0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data
no result for this sample


TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11138

Jaspar motif P-value
MA0002.2 0.0181
MA0003.1 0.384
MA0004.1 0.516
MA0006.1 0.039
MA0007.1 0.522
MA0009.1 0.291
MA0014.1 0.812
MA0017.1 0.604
MA0018.2 2.7005e-6
MA0019.1 0.537
MA0024.1 7.79718e-4
MA0025.1 0.48
MA0027.1 0.594
MA0028.1 0.478
MA0029.1 0.924
MA0030.1 0.917
MA0031.1 0.779
MA0035.2 0.753
MA0038.1 0.916
MA0039.2 0.0814
MA0040.1 0.635
MA0041.1 0.397
MA0042.1 0.659
MA0043.1 0.0291
MA0046.1 2.71062e-16
MA0047.2 0.00664
MA0048.1 0.307
MA0050.1 0.352
MA0051.1 0.818
MA0052.1 8.45454e-8
MA0055.1 0.424
MA0057.1 0.76
MA0058.1 0.722
MA0059.1 0.0217
MA0060.1 0.889
MA0061.1 0.989
MA0062.2 0.176
MA0065.2 0.405
MA0066.1 0.495
MA0067.1 0.0327
MA0068.1 0.0784
MA0069.1 0.503
MA0070.1 0.837
MA0071.1 0.741
MA0072.1 0.887
MA0073.1 0.849
MA0074.1 0.0374
MA0076.1 0.119
MA0077.1 0.846
MA0078.1 0.706
MA0079.2 0.53
MA0080.2 0.135
MA0081.1 0.403
MA0083.1 0.0283
MA0084.1 0.289
MA0087.1 0.53
MA0088.1 0.338
MA0090.1 0.153
MA0091.1 2.86777e-4
MA0092.1 0.35
MA0093.1 0.596
MA0099.2 0.00182
MA0100.1 0.0063
MA0101.1 0.936
MA0102.2 0.0321
MA0103.1 5.07519e-5
MA0104.2 0.898
MA0105.1 0.705
MA0106.1 0.309
MA0107.1 0.64
MA0108.2 0.014
MA0111.1 0.75
MA0112.2 0.0623
MA0113.1 0.572
MA0114.1 0.153
MA0115.1 0.531
MA0116.1 0.535
MA0117.1 0.121
MA0119.1 0.401
MA0122.1 0.439
MA0124.1 0.651
MA0125.1 0.104
MA0131.1 0.367
MA0135.1 0.999
MA0136.1 0.0105
MA0137.2 0.0522
MA0138.2 0.0423
MA0139.1 0.554
MA0140.1 0.412
MA0141.1 0.947
MA0142.1 0.974
MA0143.1 0.924
MA0144.1 0.0536
MA0145.1 0.127
MA0146.1 0.563
MA0147.1 0.292
MA0148.1 0.00179
MA0149.1 0.116
MA0150.1 0.0285
MA0152.1 0.231
MA0153.1 3.71077e-7
MA0154.1 0.0619
MA0155.1 0.105
MA0156.1 0.263
MA0157.1 0.642
MA0159.1 0.726
MA0160.1 0.244
MA0162.1 0.771
MA0163.1 0.0753
MA0164.1 0.434
MA0258.1 0.437
MA0259.1 0.938



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11138

Novel motif P-value
1 0.563
10 0.558
100 0.675
101 0.395
102 0.726
103 0.296
104 0.781
105 0.556
106 0.0309
107 0.657
108 0.385
109 0.09
11 0.618
110 0.118
111 0.973
112 0.317
113 0.0307
114 0.104
115 0.531
116 0.902
117 0.475
118 0.601
119 0.473
12 0.048
120 0.438
121 0.0512
122 0.592
123 0.597
124 0.352
125 0.806
126 0.0637
127 0.522
128 0.225
129 0.433
13 6.38317e-4
130 0.191
131 0.441
132 0.806
133 0.148
134 0.275
135 0.642
136 0.0507
137 0.124
138 0.00661
139 0.825
14 0.918
140 0.0503
141 0.233
142 0.378
143 0.646
144 0.304
145 0.172
146 0.993
147 0.216
148 0.0255
149 0.365
15 0.786
150 0.375
151 0.539
152 0.00482
153 0.317
154 0.672
155 0.765
156 0.00384
157 0.239
158 0.829
159 0.87
160 0.149
161 0.399
162 0.4
163 0.671
164 0.361
165 0.578
166 0.354
167 0.702
168 0.842
169 0.0534
17 0.403
18 0.142
19 0.0195
2 0.68
20 0.745
21 0.544
22 0.529
23 0.898
24 0.133
25 0.333
26 0.00159
27 0.951
28 0.161
29 0.688
3 0.892
30 0.718
31 0.59
32 0.149
33 0.47
34 0.867
35 0.257
36 0.535
37 0.149
38 0.784
39 0.0566
4 0.356
40 0.919
41 0.0454
42 0.511
43 0.513
44 0.705
45 0.795
46 0.42
47 0.831
48 0.887
49 0.619
5 0.727
50 0.26
51 0.908
52 0.261
53 0.804
54 0.589
55 0.94
56 0.508
57 0.918
58 0.624
59 0.335
6 0.995
60 0.313
61 0.221
62 0.61
63 0.405
64 0.913
65 0.348
66 0.447
67 0.718
68 0.754
69 0.839
7 0.205
70 0.908
71 0.0623
72 0.733
73 0.0784
74 0.291
75 0.741
76 0.887
77 0.238
78 0.24
79 0.0462
8 0.169
80 0.278
81 0.54
82 0.597
83 0.816
84 0.0061
85 0.835
86 0.397
87 0.28
88 0.364
89 0.746
9 0.67
90 0.706
91 0.211
92 0.592
93 0.296
94 0.26
95 0.889
96 0.308
97 0.0574
98 0.727
99 0.261



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs11138


FANTOM5 (FF) ontology


Direct parent terms

is_a relathionship
{{{is_a}}}

part_of relathionship
{{{part_of}}}

has_quality relathionship
{{{has_quality}}}

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON: Anatomy
0000061 (anatomical structure)
0000062 (organ)
0000077 (mixed endoderm/mesoderm-derived structure)
0000160 (intestine)
0000464 (anatomical space)
0000465 (material anatomical entity)
0000466 (immaterial anatomical entity)
0000467 (anatomical system)
0000468 (multi-cellular organism)
0000475 (organism subdivision)
0000479 (tissue)
0000480 (anatomical group)
0000481 (multi-tissue structure)
0000922 (embryo)
0000923 (germ layer)
0000925 (endoderm)
0000926 (mesoderm)
0000949 (endocrine system)
0001007 (digestive system)
0001041 (foregut)
0001045 (midgut)
0001048 (primordium)
0001062 (anatomical entity)
0001264 (pancreas)
0001555 (digestive tract)
0002050 (embryonic structure)
0002075 (viscus)
0002100 (trunk)
0002108 (small intestine)
0002114 (duodenum)
0002323 (body cavity)
0002532 (epiblast (generic))
0002553 (anatomical cavity)
0003104 (mesenchyme)
0003921 (pancreas primordium)
0003922 (pancreatic epithelial bud)
0003923 (dorsal pancreatic bud)
0004119 (endoderm-derived structure)
0004120 (mesoderm-derived structure)
0004185 (endodermal part of digestive tract)
0004458 (body cavity or lining)
0004921 (subdivision of digestive tract)
0005177 (trunk region element)
0005409 (gastrointestinal system)
0005423 (developing anatomical structure)
0007026 (primitive gut)
0009142 (entire embryonic mesenchyme)

FF: FANTOM5
NA

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

NA