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FF:1535-43I7

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Name:pancreas, embryo E18
Species:Mouse (Mus musculus)
Library ID:CNhs10580
Sample type:developmental
Genomic View: UCSC
MicroRNAs:Including candidate novel miRNAs(CAGE samples)
Excluding candidate novel miRNAs(CAGE samples)
CAGEd-oPOSSUM:link
Additional information
Sample information
strainC57BL/6J
tissuepancreas
dev stage18 days embryo
sexmixture
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

Accession numbers
MethodSample accession id
CAGE  SAMD00005870
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10580 CAGE DRX009059 DRR009933
Accession ID Mm9

Library idBAMCTSS
CNhs10580 DRZ001358 DRZ002741
Accession ID Mm10

Library idBAMCTSS
CNhs10580 DRZ012708 DRZ014091
Download raw sequence, BAM & CTSS
Mm9
FastaBAMCTSS
downloaddownloaddonwload
Mm10
BAMCTSS
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Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

CNhs10580

MCL coexpression id Coexpression dpi cluster scores median value
0 0
1 0
10 0
100 0
1000 0.0325
1001 0.0307
1002 0.115
1003 --0.087
1004 0
1005 0
1006 --0.0262
1007 --0.0184
1008 0
1009 0.148
101 0.033
1010 0.348
1011 --0.101
1012 0
1013 0.529
1014 0.261
1015 --0.0194
1016 --0.061
1017 0
1018 0.0567
1019 0
102 0
1020 0
1021 0.116
1022 0.327
1023 0
1024 0.116
1025 0.287
1026 0
1027 0.0554
1028 0
1029 --0.0604
103 0.147
1030 0
1031 0.296
1032 0.1
1033 0.116
1034 0.368
1035 0
1036 --0.0224
1037 0
1038 0.0319
1039 0.0159
104 0
1040 0.0939
1041 0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs10580

Jaspar motif P-value
MA0002.2 0.388
MA0003.1 0.319
MA0004.1 0.0973
MA0006.1 0.175
MA0007.1 0.165
MA0009.1 0.688
MA0014.1 0.539
MA0017.1 0.337
MA0018.2 0.226
MA0019.1 0.904
MA0024.1 0.893
MA0025.1 0.785
MA0027.1 0.845
MA0028.1 0.9
MA0029.1 0.243
MA0030.1 0.576
MA0031.1 0.54
MA0035.2 0.0552
MA0038.1 0.286
MA0039.2 0.00365
MA0040.1 0.773
MA0041.1 0.243
MA0042.1 0.69
MA0043.1 0.597
MA0046.1 2.80267e-34
MA0047.2 2.9963e-5
MA0048.1 0.769
MA0050.1 0.585
MA0051.1 0.393
MA0052.1 0.0104
MA0055.1 0.271
MA0057.1 0.663
MA0058.1 0.146
MA0059.1 0.0618
MA0060.1 4.38341e-5
MA0061.1 0.859
MA0062.2 0.633
MA0065.2 0.57
MA0066.1 0.872
MA0067.1 0.0865
MA0068.1 0.443
MA0069.1 0.476
MA0070.1 0.304
MA0071.1 0.151
MA0072.1 0.532
MA0073.1 0.697
MA0074.1 0.0344
MA0076.1 0.906
MA0077.1 0.727
MA0078.1 0.957
MA0079.2 0.0604
MA0080.2 0.476
MA0081.1 0.462
MA0083.1 0.907
MA0084.1 0.943
MA0087.1 0.391
MA0088.1 0.0718
MA0090.1 0.0628
MA0091.1 1.8934e-4
MA0092.1 0.403
MA0093.1 0.0964
MA0099.2 0.0791
MA0100.1 0.00139
MA0101.1 0.753
MA0102.2 0.312
MA0103.1 7.33688e-6
MA0104.2 0.41
MA0105.1 0.655
MA0106.1 0.865
MA0107.1 0.375
MA0108.2 0.359
MA0111.1 0.287
MA0112.2 0.427
MA0113.1 0.616
MA0114.1 0.156
MA0115.1 0.345
MA0116.1 0.487
MA0117.1 0.828
MA0119.1 0.225
MA0122.1 0.494
MA0124.1 0.875
MA0125.1 0.737
MA0131.1 0.503
MA0135.1 0.0298
MA0136.1 0.095
MA0137.2 0.00351
MA0138.2 0.154
MA0139.1 0.137
MA0140.1 0.0817
MA0141.1 0.844
MA0142.1 0.224
MA0143.1 0.351
MA0144.1 0.021
MA0145.1 0.027
MA0146.1 0.209
MA0147.1 0.198
MA0148.1 1.68419e-6
MA0149.1 0.352
MA0150.1 0.063
MA0152.1 0.927
MA0153.1 1.69796e-15
MA0154.1 0.119
MA0155.1 0.121
MA0156.1 0.991
MA0157.1 0.245
MA0159.1 0.871
MA0160.1 0.427
MA0162.1 0.554
MA0163.1 0.417
MA0164.1 0.0197
MA0258.1 0.919
MA0259.1 0.199



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs10580

Novel motif P-value
1 0.853
10 0.488
100 0.775
101 0.32
102 0.717
103 0.854
104 0.267
105 0.837
106 0.427
107 0.61
108 0.863
109 0.0387
11 0.772
110 0.354
111 0.689
112 0.882
113 0.0689
114 0.0529
115 0.86
116 0.538
117 0.893
118 0.122
119 0.816
12 0.167
120 0.621
121 0.178
122 0.475
123 0.433
124 0.355
125 0.134
126 0.0679
127 0.882
128 0.462
129 0.846
13 0.00689
130 0.836
131 0.137
132 0.865
133 0.582
134 0.114
135 0.506
136 0.0125
137 0.0929
138 0.0181
139 0.465
14 0.849
140 0.497
141 0.901
142 0.45
143 0.903
144 0.14
145 0.622
146 0.316
147 0.204
148 0.178
149 0.356
15 0.163
150 0.645
151 0.322
152 0.0149
153 0.76
154 0.132
155 0.978
156 0.00241
157 0.643
158 0.709
159 0.789
160 0.171
161 0.197
162 0.574
163 0.967
164 0.7
165 0.811
166 0.0726
167 0.36
168 0.683
169 0.144
17 0.324
18 0.0618
19 0.0743
2 0.303
20 0.735
21 0.572
22 0.266
23 0.935
24 0.0486
25 0.388
26 0.0576
27 0.974
28 0.129
29 0.743
3 0.489
30 0.287
31 0.779
32 0.761
33 0.225
34 0.656
35 0.0564
36 0.864
37 0.262
38 0.896
39 0.374
4 0.237
40 0.249
41 0.096
42 0.825
43 0.584
44 0.966
45 0.462
46 0.677
47 0.918
48 0.979
49 0.291
5 0.216
50 0.239
51 0.985
52 0.371
53 0.391
54 0.561
55 0.874
56 0.406
57 0.0616
58 0.814
59 0.0693
6 0.465
60 0.249
61 0.339
62 0.326
63 0.411
64 0.953
65 0.367
66 0.0534
67 0.85
68 0.0473
69 0.908
7 0.329
70 0.156
71 0.454
72 0.446
73 0.0587
74 0.802
75 0.971
76 0.21
77 0.0736
78 0.73
79 0.11
8 0.908
80 0.171
81 0.0716
82 0.986
83 0.886
84 0.0778
85 0.826
86 0.424
87 0.0366
88 0.255
89 0.71
9 0.664
90 0.466
91 0.968
92 0.372
93 0.957
94 0.0247
95 0.301
96 0.123
97 0.0395
98 0.43
99 0.304



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs10580


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0001264 (pancreas)
0002100 (trunk)
0000479 (tissue)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000302 (mouse embryonic day 18 sample)
0011253 (mouse pancreas- embryo E18 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

FF:0000294 (mouse embryonic day 11 sample)