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FF:1558-45G3

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Name:pancreas, embryo E17
Species:Mouse (Mus musculus)
Library ID:CNhs10599
Sample type:developmental
Genomic View: UCSC
MicroRNAs:Including candidate novel miRNAs(CAGE samples)
Excluding candidate novel miRNAs(CAGE samples)
CAGEd-oPOSSUM:link
Additional information
Sample information
strainC57BL/6J
tissuepancreas
dev stage17 days embryo
sexmixture
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

Accession numbers
MethodSample accession id
CAGE  SAMD00004945
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10599 CAGE DRX009058 DRR009932
Accession ID Mm9

Library idBAMCTSS
CNhs10599 DRZ001357 DRZ002740
Accession ID Mm10

Library idBAMCTSS
CNhs10599 DRZ012707 DRZ014090
Download raw sequence, BAM & CTSS
Mm9
FastaBAMCTSS
downloaddownloaddonwload
Mm10
BAMCTSS
downloaddonwload


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

CNhs10599

MCL coexpression id Coexpression dpi cluster scores median value
0 0
1 0
10 0
100 0
1000 0
1001 --0.0623
1002 0.00941
1003 --0.0516
1004 0
1005 0
1006 --0.143
1007 --0.101
1008 0
1009 --0.0424
101 --0.0455
1010 0.527
1011 --0.0616
1012 0
1013 0.595
1014 0.19
1015 --0.00264
1016 --0.0672
1017 0
1018 0.0904
1019 0
102 0
1020 0
1021 0
1022 0.27
1023 0
1024 0.062
1025 0.214
1026 0
1027 0
1028 0
1029 --0.148
103 0.123
1030 0
1031 0.311
1032 0.0518
1033 0.0943
1034 0.357
1035 0
1036 0.0187
1037 0
1038 --0.0845
1039 0.0918
104 0
1040 0.0478
1041 0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs10599

Jaspar motif P-value
MA0002.2 0.151
MA0003.1 0.198
MA0004.1 0.126
MA0006.1 0.268
MA0007.1 0.22
MA0009.1 0.967
MA0014.1 0.892
MA0017.1 0.769
MA0018.2 0.0126
MA0019.1 0.616
MA0024.1 0.583
MA0025.1 0.982
MA0027.1 0.514
MA0028.1 0.674
MA0029.1 0.391
MA0030.1 0.533
MA0031.1 0.67
MA0035.2 3.80273e-4
MA0038.1 0.731
MA0039.2 0.0136
MA0040.1 0.99
MA0041.1 0.164
MA0042.1 0.432
MA0043.1 0.416
MA0046.1 1.66643e-31
MA0047.2 8.16045e-5
MA0048.1 0.426
MA0050.1 2.63761e-4
MA0051.1 3.59467e-4
MA0052.1 0.488
MA0055.1 0.998
MA0057.1 0.541
MA0058.1 0.165
MA0059.1 0.0234
MA0060.1 0.00106
MA0061.1 0.372
MA0062.2 0.378
MA0065.2 0.0159
MA0066.1 0.411
MA0067.1 0.0263
MA0068.1 0.378
MA0069.1 0.177
MA0070.1 0.155
MA0071.1 0.96
MA0072.1 0.906
MA0073.1 0.772
MA0074.1 0.0462
MA0076.1 0.54
MA0077.1 0.133
MA0078.1 0.247
MA0079.2 0.196
MA0080.2 0.325
MA0081.1 0.209
MA0083.1 0.653
MA0084.1 0.624
MA0087.1 0.407
MA0088.1 0.138
MA0090.1 0.132
MA0091.1 1.74144e-6
MA0092.1 0.379
MA0093.1 0.118
MA0099.2 0.818
MA0100.1 0.00787
MA0101.1 0.675
MA0102.2 0.0817
MA0103.1 7.02301e-6
MA0104.2 0.19
MA0105.1 0.238
MA0106.1 0.731
MA0107.1 0.894
MA0108.2 6.22838e-4
MA0111.1 0.647
MA0112.2 0.0266
MA0113.1 0.419
MA0114.1 0.462
MA0115.1 0.983
MA0116.1 0.2
MA0117.1 0.875
MA0119.1 0.0686
MA0122.1 0.921
MA0124.1 0.523
MA0125.1 0.265
MA0131.1 0.645
MA0135.1 0.0137
MA0136.1 0.118
MA0137.2 0.139
MA0138.2 0.819
MA0139.1 0.125
MA0140.1 0.00298
MA0141.1 0.0482
MA0142.1 0.355
MA0143.1 0.612
MA0144.1 0.0527
MA0145.1 0.0148
MA0146.1 0.122
MA0147.1 0.0472
MA0148.1 2.89131e-4
MA0149.1 0.424
MA0150.1 0.511
MA0152.1 0.403
MA0153.1 3.03906e-13
MA0154.1 0.0203
MA0155.1 0.0653
MA0156.1 0.476
MA0157.1 0.669
MA0159.1 0.239
MA0160.1 0.0806
MA0162.1 0.287
MA0163.1 0.0542
MA0164.1 0.0369
MA0258.1 0.0644
MA0259.1 0.422



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs10599

Novel motif P-value
1 0.554
10 0.669
100 0.952
101 0.969
102 0.239
103 0.995
104 0.699
105 0.803
106 0.167
107 0.944
108 0.461
109 8.62507e-4
11 0.181
110 0.344
111 0.503
112 0.306
113 0.357
114 0.849
115 0.777
116 0.0166
117 0.575
118 0.418
119 0.42
12 0.529
120 0.978
121 0.987
122 0.285
123 0.381
124 0.184
125 0.17
126 0.0167
127 0.402
128 0.396
129 0.642
13 0.018
130 0.975
131 0.262
132 0.266
133 0.868
134 0.106
135 0.61
136 0.0546
137 0.343
138 0.0595
139 0.835
14 0.8
140 0.904
141 0.412
142 0.0875
143 0.716
144 0.303
145 0.291
146 0.0505
147 0.0148
148 0.412
149 0.0775
15 0.259
150 0.506
151 0.992
152 0.0279
153 0.531
154 0.158
155 0.973
156 0.0162
157 0.839
158 0.891
159 0.58
160 0.191
161 0.151
162 0.965
163 0.933
164 0.974
165 0.895
166 0.158
167 0.0667
168 0.113
169 0.102
17 0.331
18 0.706
19 0.054
2 0.136
20 0.612
21 0.691
22 0.171
23 0.388
24 0.0105
25 0.965
26 0.00909
27 0.374
28 0.413
29 0.54
3 0.714
30 0.119
31 0.439
32 0.221
33 0.598
34 0.346
35 0.511
36 0.158
37 0.13
38 0.53
39 0.146
4 0.0822
40 0.0199
41 0.793
42 0.303
43 0.789
44 0.0988
45 0.33
46 0.369
47 0.37
48 0.406
49 0.836
5 0.517
50 0.109
51 0.844
52 0.325
53 0.309
54 0.967
55 0.684
56 0.17
57 0.176
58 0.425
59 0.00489
6 0.441
60 0.18
61 0.464
62 0.558
63 0.0721
64 0.39
65 0.0785
66 0.0613
67 0.66
68 0.165
69 0.978
7 0.161
70 0.76
71 0.0512
72 0.409
73 0.0391
74 0.447
75 0.417
76 0.254
77 0.015
78 0.333
79 0.14
8 0.319
80 0.504
81 0.741
82 0.468
83 0.75
84 0.573
85 0.333
86 0.549
87 0.00812
88 0.272
89 0.165
9 0.638
90 0.21
91 0.883
92 0.616
93 0.746
94 0.012
95 0.0398
96 0.545
97 0.0368
98 0.5
99 0.104



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs10599


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0001264 (pancreas)
0002100 (trunk)
0000479 (tissue)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000300 (mouse embryonic day 17 sample)
0011258 (mouse pancreas- embryo E17 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

FF:0000294 (mouse embryonic day 11 sample)