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FF:18-22I9

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Name:olfactory brain, adult
Species:Mouse (Mus musculus)
Library ID:CNhs10489
Sample type:developmental
Genomic View: UCSC
MicroRNAs:Including candidate novel miRNAs(CAGE samples)
Excluding candidate novel miRNAs(CAGE samples)
CAGEd-oPOSSUM:link
Additional information
Sample information
strainC57BL/6J
tissueolfactory brain
dev stageadult
sexmale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

Accession numbers
MethodSample accession id
CAGE  SAMD00005249
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10489 CAGE DRX009049 DRR009923
Accession ID Mm9

Library idBAMCTSS
CNhs10489 DRZ001348 DRZ002731
Accession ID Mm10

Library idBAMCTSS
CNhs10489 DRZ012698 DRZ014081
Download raw sequence, BAM & CTSS
Mm9
FastaBAMCTSS
downloaddownloaddonwload
Mm10
BAMCTSS
downloaddonwload


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

CNhs10489

MCL coexpression id Coexpression dpi cluster scores median value
0 0
1 0.707
10 0
100 0
1000 0
1001 0.0664
1002 --0.0841
1003 0.128
1004 0
1005 0.0504
1006 0.665
1007 0.135
1008 0
1009 --0.0442
101 --0.0689
1010 0
1011 0.591
1012 0.467
1013 0.173
1014 0.0337
1015 0.0388
1016 --0.00757
1017 0
1018 0
1019 0
102 0
1020 0
1021 0
1022 0.169
1023 0
1024 0
1025 0
1026 0
1027 0.679
1028 0
1029 0.11
103 --0.0812
1030 0
1031 --0.321
1032 0.154
1033 0.0458
1034 0
1035 0
1036 --0.0428
1037 0
1038 --0.0421
1039 0.085
104 0
1040 --0.209
1041 0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs10489

Jaspar motif P-value
MA0002.2 0.00676
MA0003.1 0.313
MA0004.1 0.544
MA0006.1 0.146
MA0007.1 0.332
MA0009.1 0.268
MA0014.1 0.367
MA0017.1 1.52118e-6
MA0018.2 0.00452
MA0019.1 0.269
MA0024.1 0.0992
MA0025.1 0.0456
MA0027.1 0.0222
MA0028.1 0.0534
MA0029.1 0.466
MA0030.1 0.934
MA0031.1 0.258
MA0035.2 0.00309
MA0038.1 0.209
MA0039.2 0.00498
MA0040.1 0.067
MA0041.1 0.902
MA0042.1 0.489
MA0043.1 0.0839
MA0046.1 2.48476e-12
MA0047.2 4.7433e-5
MA0048.1 0.0624
MA0050.1 0.00729
MA0051.1 0.0053
MA0052.1 0.125
MA0055.1 0.0155
MA0057.1 0.327
MA0058.1 0.45
MA0059.1 0.127
MA0060.1 0.857
MA0061.1 0.0462
MA0062.2 8.30216e-4
MA0065.2 3.14377e-6
MA0066.1 0.0439
MA0067.1 0.71
MA0068.1 0.934
MA0069.1 0.0778
MA0070.1 0.444
MA0071.1 0.0801
MA0072.1 0.383
MA0073.1 0.869
MA0074.1 0.192
MA0076.1 0.142
MA0077.1 0.713
MA0078.1 0.789
MA0079.2 0.59
MA0080.2 2.62196e-9
MA0081.1 0.345
MA0083.1 0.087
MA0084.1 0.994
MA0087.1 0.53
MA0088.1 0.422
MA0090.1 0.112
MA0091.1 0.139
MA0092.1 0.147
MA0093.1 0.596
MA0099.2 0.00198
MA0100.1 0.287
MA0101.1 0.0216
MA0102.2 0.574
MA0103.1 0.0939
MA0104.2 0.878
MA0105.1 0.0253
MA0106.1 0.0691
MA0107.1 0.0605
MA0108.2 0.00695
MA0111.1 0.776
MA0112.2 9.0836e-4
MA0113.1 0.546
MA0114.1 7.26552e-6
MA0115.1 4.12751e-5
MA0116.1 0.107
MA0117.1 0.933
MA0119.1 0.106
MA0122.1 0.591
MA0124.1 0.324
MA0125.1 0.0123
MA0131.1 0.687
MA0135.1 0.832
MA0136.1 1.59926e-13
MA0137.2 0.322
MA0138.2 0.00104
MA0139.1 0.532
MA0140.1 2.08256e-4
MA0141.1 0.00112
MA0142.1 0.188
MA0143.1 0.69
MA0144.1 0.0979
MA0145.1 0.088
MA0146.1 0.0136
MA0147.1 0.693
MA0148.1 1.84511e-4
MA0149.1 0.127
MA0150.1 0.155
MA0152.1 0.96
MA0153.1 1.93551e-14
MA0154.1 0.0781
MA0155.1 0.437
MA0156.1 2.29021e-8
MA0157.1 0.259
MA0159.1 0.0111
MA0160.1 0.00582
MA0162.1 0.148
MA0163.1 0.00244
MA0164.1 0.88
MA0258.1 0.018
MA0259.1 0.863



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs10489

Novel motif P-value
1 0.191
10 0.0573
100 0.398
101 0.435
102 0.861
103 0.028
104 0.859
105 0.507
106 0.0705
107 0.244
108 0.693
109 0.00134
11 0.0504
110 0.0628
111 0.0685
112 0.00545
113 0.413
114 0.381
115 0.778
116 0.197
117 0.00331
118 0.329
119 0.236
12 0.959
120 0.969
121 0.645
122 0.772
123 0.0179
124 0.0776
125 0.388
126 0.015
127 0.14
128 0.0429
129 0.59
13 1.15965e-7
130 0.243
131 0.623
132 0.673
133 0.643
134 0.0898
135 0.657
136 0.0459
137 0.618
138 0.863
139 0.302
14 0.96
140 0.0927
141 0.759
142 0.669
143 0.517
144 0.457
145 0.00223
146 0.32
147 0.431
148 0.77
149 0.404
15 0.171
150 0.0951
151 0.797
152 0.0676
153 0.776
154 0.908
155 0.135
156 0.178
157 0.323
158 0.26
159 0.599
160 0.247
161 0.173
162 0.442
163 0.842
164 0.0349
165 0.0206
166 0.894
167 0.704
168 0.631
169 0.00443
17 0.0359
18 0.723
19 0.081
2 0.778
20 0.0663
21 0.191
22 0.136
23 0.628
24 0.0385
25 0.674
26 1.1672e-6
27 0.631
28 0.833
29 0.0164
3 0.0722
30 0.756
31 0.988
32 0.377
33 0.208
34 0.665
35 0.711
36 0.255
37 0.0236
38 0.334
39 0.262
4 0.22
40 0.0913
41 0.468
42 0.224
43 0.185
44 0.159
45 0.741
46 0.145
47 0.304
48 0.203
49 0.263
5 0.228
50 0.271
51 0.712
52 0.307
53 0.528
54 0.835
55 0.854
56 0.572
57 0.605
58 0.317
59 0.123
6 0.751
60 0.049
61 0.039
62 0.205
63 0.152
64 0.535
65 0.333
66 0.734
67 0.591
68 0.487
69 0.429
7 0.0158
70 0.0741
71 0.00522
72 0.544
73 0.0185
74 0.81
75 0.0361
76 0.496
77 0.291
78 0.00347
79 0.886
8 0.0435
80 0.889
81 0.841
82 0.247
83 0.0213
84 0.646
85 0.154
86 0.215
87 0.0539
88 0.488
89 0.524
9 0.555
90 0.095
91 0.0972
92 0.239
93 0.175
94 0.788
95 0.0106
96 0.305
97 0.857
98 0.661
99 0.385



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs10489


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011286 (mouse olfactory brain- adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006238 (future brain)
UBERON:0010316 (germ layer / neural crest)