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{{f5samples
 
{{f5samples
 +
|DRA_sample_Accession=CAGE@DRS008989
 
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001723,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001444,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000020,UBERON:0001032,UBERON:0010317,UBERON:0001555,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0004456,UBERON:0001033
 
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001723,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001444,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000020,UBERON:0001032,UBERON:0010317,UBERON:0001555,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0004456,UBERON:0001033
 
|ancestors_in_cell_lineage_facet=
 
|ancestors_in_cell_lineage_facet=
Line 41: Line 42:
 
|is_a=EFO:0002091;;FF:0011310
 
|is_a=EFO:0002091;;FF:0011310
 
|is_obsolete=
 
|is_obsolete=
 +
|library_ids=CNhs10499
 
|name=tongue, adult
 
|name=tongue, adult
 
|namespace=FANTOM5
 
|namespace=FANTOM5
Line 83: Line 85:
 
|top_motifs=HOX{A4,D4}:3.95839818082;MYOD1:3.36010449997;FOS_FOS{B,L1}_JUN{B,D}:3.341260779;HMX1:3.0253051696;MEF2{A,B,C,D}:2.99298771809;NFE2L2:2.96092411292;ZNF148:2.88530711017;AR:2.86048200384;FOSL2:2.8036262945;NFE2:2.65375763751;TBP:2.52062351239;CRX:2.43213458867;BACH2:2.33320119489;T:2.32835812538;TFAP2{A,C}:2.26776157556;TP53:1.97834476744;TBX4,5:1.8613739658;NKX3-2:1.80493820889;TFCP2:1.7709202014;TGIF1:1.71647913958;NFATC1..3:1.69608014168;TFAP4:1.63471191967;FOXN1:1.53049062178;PAX2:1.50261689857;ESR1:1.48100541206;GCM1,2:1.47799838457;FOXQ1:1.47085932333;ESRRA:1.46400528763;NKX2-2,8:1.43905366352;NKX2-1,4:1.42681016537;GTF2A1,2:1.42065807329;FOXO1,3,4:1.36823784678;SNAI1..3:1.36409917904;FOX{D1,D2}:1.36094459637;bHLH_family:1.30215388086;MAFB:1.23786562091;NKX2-3_NKX2-5:1.22911475724;PAX5:1.20881263113;SMAD1..7,9:1.18838344306;TEAD1:1.1871928048;NFE2L1:1.18233774281;LEF1_TCF7_TCF7L1,2:1.18204483889;TAL1_TCF{3,4,12}:1.10755781176;NR5A1,2:1.02196147916;NR3C1:1.00573322943;EBF1:0.944647974734;GLI1..3:0.938413254712;ALX1:0.936349909371;EP300:0.912438763959;SP1:0.894284055115;ZIC1..3:0.873297376126;BPTF:0.846878513581;FOXL1:0.83178132915;ZEB1:0.826357409978;SRF:0.777844969971;RBPJ:0.776720933879;NANOG:0.733812211872;ATF6:0.722254422463;VSX1,2:0.715888971562;NR1H4:0.711822292628;SREBF1,2:0.710403309132;ALX4:0.678493725522;MYFfamily:0.671624077655;STAT5{A,B}:0.669836125687;HSF1,2:0.667246193637;HOX{A5,B5}:0.664985663121;NHLH1,2:0.630753195499;SOX5:0.611067199374;CEBPA,B_DDIT3:0.610990922129;SPZ1:0.610821374123;FOXA2:0.610470059262;NFIX:0.576097835051;HAND1,2:0.569219234354;RFX2..5_RFXANK_RFXAP:0.561178273823;IKZF1:0.502806079148;LMO2:0.502206875002;XCPE1{core}:0.481888009748;DMAP1_NCOR{1,2}_SMARC:0.448388248683;PAX1,9:0.435050722859;KLF4:0.422564961356;ATF4:0.41812956217;FOX{I1,J2}:0.412328517268;TLX2:0.402850834302;HLF:0.285207710024;GTF2I:0.271175251718;TLX1..3_NFIC{dimer}:0.233514761554;TOPORS:0.226411069371;FOX{F1,F2,J1}:0.21697392753;PDX1:0.213072193607;HIC1:0.209569644751;AIRE:0.191633846286;ATF2:0.172204330419;MAZ:0.171062287379;HBP1_HMGB_SSRP1_UBTF:0.141869504259;ZNF238:0.136910598081;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.125059739193;PBX1:0.0974187772399;POU3F1..4:0.0931834368963;MTF1:0.0807568309443;EN1,2:0.0728432013487;HIF1A:0.0480802433246;RXR{A,B,G}:0.0437330966202;NFIL3:0.0239713121023;IRF7:-0.00932307512736;IRF1,2:-0.0183781430703;ETS1,2:-0.0295500136974;HMGA1,2:-0.0435424841264;STAT2,4,6:-0.0453883968167;MYBL2:-0.056371596068;REST:-0.0587720582529;RXRA_VDR{dimer}:-0.071367102134;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0843026836753;NFKB1_REL_RELA:-0.0980061912001;PATZ1:-0.112125366046;GFI1B:-0.113430665478;TEF:-0.116301880593;PPARG:-0.120546121913;GATA4:-0.126304464092;SPI1:-0.157412241643;ATF5_CREB3:-0.181141744713;PITX1..3:-0.216973299417;GFI1:-0.228191646925;RORA:-0.240554431995;HOXA9_MEIS1:-0.272944976282;PRDM1:-0.274108455691;ELF1,2,4:-0.299004073204;ZNF143:-0.321351714338;SOX{8,9,10}:-0.328905907271;LHX3,4:-0.334520886539;YY1:-0.339410303263;MED-1{core}:-0.36153802339;TFAP2B:-0.380726613843;IKZF2:-0.380894487878;ZNF384:-0.391867457226;EGR1..3:-0.398249463326;AHR_ARNT_ARNT2:-0.40362879564;POU6F1:-0.411668517439;MZF1:-0.412823301443;FOXP1:-0.456656522591;HES1:-0.476312384605;HNF4A_NR2F1,2:-0.487862832345;CREB1:-0.488165382324;JUN:-0.488512742557;CDC5L:-0.496101037172;NKX6-1,2:-0.524373917327;UFEwm:-0.5324735369;FOXP3:-0.549994372331;PAX8:-0.581220820844;ZBTB6:-0.584491708501;POU1F1:-0.58771209921;PRRX1,2:-0.631031211907;SOX2:-0.633310622491;FOXM1:-0.692099142013;DBP:-0.703567878533;RREB1:-0.733363049888;MTE{core}:-0.737328152417;NRF1:-0.794979791741;ELK1,4_GABP{A,B1}:-0.796289634402;SPIB:-0.805761018926;CUX2:-0.816965655045;HNF1A:-0.823993742815;RFX1:-0.824465546088;RUNX1..3:-0.826541765194;ARID5B:-0.842024588428;ZFP161:-0.867017440845;POU2F1..3:-0.869633630972;BREu{core}:-0.921283530638;SOX17:-0.948972972473;GATA6:-0.950147587773;MYB:-0.960402661976;NR6A1:-0.986706427061;NKX3-1:-1.03018849275;NANOG{mouse}:-1.22422540482;POU5F1:-1.23437609478;PAX6:-1.23885926087;ADNP_IRX_SIX_ZHX:-1.24391828606;ONECUT1,2:-1.24855398697;TFDP1:-1.2566719932;E2F1..5:-1.36661351651;EVI1:-1.39456887719;OCT4_SOX2{dimer}:-1.47684123818;ZNF423:-1.52478450607;STAT1,3:-1.62585210989;NFY{A,B,C}:-1.64934992357;GZF1:-1.76914803197;FOXD3:-1.85658708306;ZBTB16:-1.97232876432;CDX1,2,4:-2.01638003698;PAX4:-2.19110467982
 
|top_motifs=HOX{A4,D4}:3.95839818082;MYOD1:3.36010449997;FOS_FOS{B,L1}_JUN{B,D}:3.341260779;HMX1:3.0253051696;MEF2{A,B,C,D}:2.99298771809;NFE2L2:2.96092411292;ZNF148:2.88530711017;AR:2.86048200384;FOSL2:2.8036262945;NFE2:2.65375763751;TBP:2.52062351239;CRX:2.43213458867;BACH2:2.33320119489;T:2.32835812538;TFAP2{A,C}:2.26776157556;TP53:1.97834476744;TBX4,5:1.8613739658;NKX3-2:1.80493820889;TFCP2:1.7709202014;TGIF1:1.71647913958;NFATC1..3:1.69608014168;TFAP4:1.63471191967;FOXN1:1.53049062178;PAX2:1.50261689857;ESR1:1.48100541206;GCM1,2:1.47799838457;FOXQ1:1.47085932333;ESRRA:1.46400528763;NKX2-2,8:1.43905366352;NKX2-1,4:1.42681016537;GTF2A1,2:1.42065807329;FOXO1,3,4:1.36823784678;SNAI1..3:1.36409917904;FOX{D1,D2}:1.36094459637;bHLH_family:1.30215388086;MAFB:1.23786562091;NKX2-3_NKX2-5:1.22911475724;PAX5:1.20881263113;SMAD1..7,9:1.18838344306;TEAD1:1.1871928048;NFE2L1:1.18233774281;LEF1_TCF7_TCF7L1,2:1.18204483889;TAL1_TCF{3,4,12}:1.10755781176;NR5A1,2:1.02196147916;NR3C1:1.00573322943;EBF1:0.944647974734;GLI1..3:0.938413254712;ALX1:0.936349909371;EP300:0.912438763959;SP1:0.894284055115;ZIC1..3:0.873297376126;BPTF:0.846878513581;FOXL1:0.83178132915;ZEB1:0.826357409978;SRF:0.777844969971;RBPJ:0.776720933879;NANOG:0.733812211872;ATF6:0.722254422463;VSX1,2:0.715888971562;NR1H4:0.711822292628;SREBF1,2:0.710403309132;ALX4:0.678493725522;MYFfamily:0.671624077655;STAT5{A,B}:0.669836125687;HSF1,2:0.667246193637;HOX{A5,B5}:0.664985663121;NHLH1,2:0.630753195499;SOX5:0.611067199374;CEBPA,B_DDIT3:0.610990922129;SPZ1:0.610821374123;FOXA2:0.610470059262;NFIX:0.576097835051;HAND1,2:0.569219234354;RFX2..5_RFXANK_RFXAP:0.561178273823;IKZF1:0.502806079148;LMO2:0.502206875002;XCPE1{core}:0.481888009748;DMAP1_NCOR{1,2}_SMARC:0.448388248683;PAX1,9:0.435050722859;KLF4:0.422564961356;ATF4:0.41812956217;FOX{I1,J2}:0.412328517268;TLX2:0.402850834302;HLF:0.285207710024;GTF2I:0.271175251718;TLX1..3_NFIC{dimer}:0.233514761554;TOPORS:0.226411069371;FOX{F1,F2,J1}:0.21697392753;PDX1:0.213072193607;HIC1:0.209569644751;AIRE:0.191633846286;ATF2:0.172204330419;MAZ:0.171062287379;HBP1_HMGB_SSRP1_UBTF:0.141869504259;ZNF238:0.136910598081;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.125059739193;PBX1:0.0974187772399;POU3F1..4:0.0931834368963;MTF1:0.0807568309443;EN1,2:0.0728432013487;HIF1A:0.0480802433246;RXR{A,B,G}:0.0437330966202;NFIL3:0.0239713121023;IRF7:-0.00932307512736;IRF1,2:-0.0183781430703;ETS1,2:-0.0295500136974;HMGA1,2:-0.0435424841264;STAT2,4,6:-0.0453883968167;MYBL2:-0.056371596068;REST:-0.0587720582529;RXRA_VDR{dimer}:-0.071367102134;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0843026836753;NFKB1_REL_RELA:-0.0980061912001;PATZ1:-0.112125366046;GFI1B:-0.113430665478;TEF:-0.116301880593;PPARG:-0.120546121913;GATA4:-0.126304464092;SPI1:-0.157412241643;ATF5_CREB3:-0.181141744713;PITX1..3:-0.216973299417;GFI1:-0.228191646925;RORA:-0.240554431995;HOXA9_MEIS1:-0.272944976282;PRDM1:-0.274108455691;ELF1,2,4:-0.299004073204;ZNF143:-0.321351714338;SOX{8,9,10}:-0.328905907271;LHX3,4:-0.334520886539;YY1:-0.339410303263;MED-1{core}:-0.36153802339;TFAP2B:-0.380726613843;IKZF2:-0.380894487878;ZNF384:-0.391867457226;EGR1..3:-0.398249463326;AHR_ARNT_ARNT2:-0.40362879564;POU6F1:-0.411668517439;MZF1:-0.412823301443;FOXP1:-0.456656522591;HES1:-0.476312384605;HNF4A_NR2F1,2:-0.487862832345;CREB1:-0.488165382324;JUN:-0.488512742557;CDC5L:-0.496101037172;NKX6-1,2:-0.524373917327;UFEwm:-0.5324735369;FOXP3:-0.549994372331;PAX8:-0.581220820844;ZBTB6:-0.584491708501;POU1F1:-0.58771209921;PRRX1,2:-0.631031211907;SOX2:-0.633310622491;FOXM1:-0.692099142013;DBP:-0.703567878533;RREB1:-0.733363049888;MTE{core}:-0.737328152417;NRF1:-0.794979791741;ELK1,4_GABP{A,B1}:-0.796289634402;SPIB:-0.805761018926;CUX2:-0.816965655045;HNF1A:-0.823993742815;RFX1:-0.824465546088;RUNX1..3:-0.826541765194;ARID5B:-0.842024588428;ZFP161:-0.867017440845;POU2F1..3:-0.869633630972;BREu{core}:-0.921283530638;SOX17:-0.948972972473;GATA6:-0.950147587773;MYB:-0.960402661976;NR6A1:-0.986706427061;NKX3-1:-1.03018849275;NANOG{mouse}:-1.22422540482;POU5F1:-1.23437609478;PAX6:-1.23885926087;ADNP_IRX_SIX_ZHX:-1.24391828606;ONECUT1,2:-1.24855398697;TFDP1:-1.2566719932;E2F1..5:-1.36661351651;EVI1:-1.39456887719;OCT4_SOX2{dimer}:-1.47684123818;ZNF423:-1.52478450607;STAT1,3:-1.62585210989;NFY{A,B,C}:-1.64934992357;GZF1:-1.76914803197;FOXD3:-1.85658708306;ZBTB16:-1.97232876432;CDX1,2,4:-2.01638003698;PAX4:-2.19110467982
 
|xref=
 
|xref=
 +
}} {{DRAAccessionNumbers
 +
|DRA_sample_Accession=CAGE@DRS008989
 +
|accession_numbers=DRX009126;DRR010000;DRZ001425;DRZ002808;CAGE
 +
|library_id=CNhs10499
 
}}
 
}}

Revision as of 12:21, 16 October 2013


Name:tongue, adult
Species:Mouse (Mus musculus)
Library ID:{{{library_id}}}
Sample type:developmental
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainC57BL/6J
tissuetongue
dev stageadult
sexmale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

Accession numbers
MethodSample accession id
CAGE  DRS008989
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{library_id}}} {{{accession_numbers}}}
Accession ID Mm9

Library idBAMCTSS
{{{library_id}}}
Download raw sequence, BAM & CTSS
Mm9
BAMCTSS
[{{{mm9bam}}} download][{{{mm9ctss}}} donwload]
Mm10
BAMCTSS
[{{{mm10bam}}} download][{{{mm10ctss}}} donwload]


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

CNhs10499

MCL coexpression id Coexpression dpi cluster scores median value
0 0
1 0
10 0
100 0
1000 1.018
1001 0.493
1002 0
1003 0.306
1004 0
1005 0.0234
1006 0.587
1007 --0.113
1008 0
1009 0.0804
101 --0.00874
1010 0
1011 0.0752
1012 0
1013 --0.0329
1014 0
1015 --0.155
1016 --0.181
1017 0.725
1018 0.571
1019 0
102 0
1020 0
1021 0
1022 0.866
1023 0
1024 0.343
1025 0
1026 0
1027 0
1028 0
1029 --0.0136
103 --0.061
1030 0
1031 --0.352
1032 0.101
1033 0.0887
1034 0.0887
1035 0.0887
1036 --0.106
1037 0
1038 --0.0729
1039 0.395
104 0
1040 0.0569
1041 0.162



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs10499

Jaspar motif P-value
MA0002.2 0.227
MA0003.1 0.203
MA0004.1 0.635
MA0006.1 0.148
MA0007.1 0.656
MA0009.1 0.311
MA0014.1 0.519
MA0017.1 0.0575
MA0018.2 0.12
MA0019.1 0.864
MA0024.1 7.56137e-5
MA0025.1 0.138
MA0027.1 0.386
MA0028.1 0.00515
MA0029.1 0.541
MA0030.1 0.0104
MA0031.1 0.032
MA0035.2 0.00797
MA0038.1 0.283
MA0039.2 0.00598
MA0040.1 0.144
MA0041.1 0.95
MA0042.1 0.559
MA0043.1 0.117
MA0046.1 1.07965e-13
MA0047.2 0.0125
MA0048.1 0.0203
MA0050.1 0.184
MA0051.1 0.794
MA0052.1 5.20507e-50
MA0055.1 0.0179
MA0057.1 0.0466
MA0058.1 0.425
MA0059.1 0.112
MA0060.1 1.05901e-5
MA0061.1 0.65
MA0062.2 6.70067e-6
MA0065.2 0.12
MA0066.1 0.371
MA0067.1 0.991
MA0068.1 0.338
MA0069.1 0.422
MA0070.1 0.862
MA0071.1 0.728
MA0072.1 0.467
MA0073.1 0.304
MA0074.1 0.311
MA0076.1 0.00107
MA0077.1 0.16
MA0078.1 0.41
MA0079.2 0.0205
MA0080.2 0.00114
MA0081.1 0.0416
MA0083.1 0.00397
MA0084.1 0.725
MA0087.1 0.567
MA0088.1 0.983
MA0090.1 0.0288
MA0091.1 0.668
MA0092.1 0.34
MA0093.1 0.595
MA0099.2 2.16612e-15
MA0100.1 0.0282
MA0101.1 0.389
MA0102.2 0.333
MA0103.1 0.0118
MA0104.2 0.182
MA0105.1 0.578
MA0106.1 0.156
MA0107.1 0.606
MA0108.2 4.02479e-21
MA0111.1 0.817
MA0112.2 0.00183
MA0113.1 0.838
MA0114.1 0.267
MA0115.1 0.00534
MA0116.1 0.903
MA0117.1 0.865
MA0119.1 0.524
MA0122.1 0.348
MA0124.1 0.78
MA0125.1 0.377
MA0131.1 0.219
MA0135.1 0.199
MA0136.1 4.71533e-5
MA0137.2 0.827
MA0138.2 1.76694e-4
MA0139.1 0.986
MA0140.1 0.0293
MA0141.1 0.0399
MA0142.1 0.154
MA0143.1 0.206
MA0144.1 0.409
MA0145.1 0.0073
MA0146.1 0.335
MA0147.1 0.218
MA0148.1 0.0433
MA0149.1 0.643
MA0150.1 0.00658
MA0152.1 0.998
MA0153.1 2.13702e-9
MA0154.1 0.0601
MA0155.1 0.668
MA0156.1 6.89293e-4
MA0157.1 0.0249
MA0159.1 0.103
MA0160.1 0.057
MA0162.1 0.537
MA0163.1 0.943
MA0164.1 0.369
MA0258.1 0.00985
MA0259.1 0.166



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs10499

Novel motif P-value
1 0.365
10 0.845
100 0.816
101 0.368
102 0.556
103 0.591
104 0.947
105 0.133
106 0.0457
107 0.103
108 0.741
109 0.372
11 0.739
110 0.624
111 0.13
112 0.785
113 0.666
114 0.222
115 0.148
116 0.251
117 0.495
118 0.199
119 0.0126
12 0.625
120 0.625
121 0.202
122 0.346
123 0.63
124 0.354
125 0.479
126 0.439
127 0.213
128 0.125
129 0.472
13 0.0237
130 0.874
131 0.386
132 0.832
133 0.968
134 0.867
135 0.982
136 0.167
137 0.82
138 0.847
139 0.0595
14 0.119
140 0.0975
141 0.132
142 0.579
143 0.173
144 0.775
145 0.613
146 0.755
147 0.882
148 0.554
149 0.173
15 0.82
150 0.54
151 0.182
152 0.0265
153 0.571
154 0.926
155 0.0845
156 0.559
157 0.0887
158 0.773
159 0.342
160 0.412
161 0.11
162 0.329
163 0.764
164 0.708
165 0.127
166 0.691
167 0.0245
168 0.128
169 0.00537
17 0.0326
18 0.695
19 0.0967
2 0.258
20 0.329
21 0.679
22 0.165
23 0.123
24 0.33
25 0.851
26 0.174
27 0.689
28 0.615
29 0.695
3 0.63
30 0.1
31 0.709
32 0.825
33 0.742
34 0.483
35 0.348
36 0.0491
37 0.0692
38 0.736
39 0.333
4 0.641
40 0.484
41 0.154
42 0.735
43 0.469
44 0.829
45 0.185
46 0.304
47 0.698
48 0.702
49 0.682
5 0.624
50 0.438
51 0.687
52 0.183
53 0.419
54 0.235
55 0.946
56 0.326
57 0.766
58 0.466
59 0.156
6 0.805
60 0.0791
61 0.588
62 0.357
63 0.0694
64 0.92
65 0.411
66 0.956
67 0.238
68 0.321
69 0.283
7 0.242
70 0.0428
71 0.218
72 0.778
73 0.0416
74 0.842
75 0.778
76 0.0402
77 0.0246
78 0.214
79 0.899
8 0.821
80 0.974
81 0.0855
82 0.193
83 0.611
84 0.0595
85 0.00828
86 0.218
87 0.151
88 0.824
89 0.117
9 0.269
90 0.675
91 0.575
92 0.327
93 0.329
94 0.553
95 0.54
96 0.162
97 0.479
98 0.849
99 0.417



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs10499


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001723 (tongue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001444 (subdivision of head)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000020 (sense organ)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0004456 (entire sense organ system)
0001033 (gustatory system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011310 (mouse tongue- adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006595 (presumptive endoderm)
UBERON:0008814 (pharyngeal arch system)
UBERON:0010056 (future tongue)
UBERON:0010316 (germ layer / neural crest)

{{{1}}} Accession numbers
MethodSample accession id
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Library accession numbers

Library idMethodExp. accession idRun accession id
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Accession ID

Library idBAMCTSS
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