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FF:453-14F2

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Name:whole body, embryo E16
Species:Mouse (Mus musculus)
Library ID:{{{library_id}}}
Sample type:{{{sample_category}}}
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainC57BL/6J
tissuewhole body
dev stage16 days embryo
sexmixture
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA
Download raw sequence, BAM & CTSS
Mm9
BAMCTSS
[{{{mm9bam}}} download][{{{mm9ctss}}} donwload]
Mm10
BAMCTSS
[{{{mm10bam}}} download][{{{mm10ctss}}} donwload]





Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

CNhs10514

MCL coexpression id Coexpression dpi cluster scores median value
0 0
1 0.0954
10 0
100 0.0733
1000 0.0733
1001 --0.0625
1002 0
1003 0.0728
1004 0
1005 --0.0389
1006 0.0548
1007 0.00792
1008 0
1009 0.0161
101 --0.0295
1010 0
1011 0.0557
1012 0
1013 --0.175
1014 0.272
1015 0.121
1016 0.122
1017 0.0733
1018 0.191
1019 0
102 0
1020 0
1021 0
1022 0.0996
1023 0
1024 --0.0663
1025 0.393
1026 0.0733
1027 0.075
1028 0
1029 --0.148
103 0.136
1030 0
1031 0.164
1032 --0.177
1033 0
1034 0
1035 0
1036 --0.0395
1037 0
1038 --0.0126
1039 0.062
104 0
1040 0.0494
1041 0.136



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data
no result for this sample


TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs10514

Jaspar motif P-value
MA0002.2 0.395
MA0003.1 0.139
MA0004.1 0.0977
MA0006.1 0.651
MA0007.1 0.08
MA0009.1 0.836
MA0014.1 0.185
MA0017.1 0.308
MA0018.2 0.934
MA0019.1 0.874
MA0024.1 0.276
MA0025.1 0.934
MA0027.1 0.954
MA0028.1 5.62343e-6
MA0029.1 0.413
MA0030.1 0.197
MA0031.1 0.707
MA0035.2 0.0232
MA0038.1 0.0143
MA0039.2 0.43
MA0040.1 0.674
MA0041.1 0.293
MA0042.1 0.626
MA0043.1 0.82
MA0046.1 1.06254e-14
MA0047.2 0.21
MA0048.1 0.0156
MA0050.1 1.5814e-5
MA0051.1 1.61826e-4
MA0052.1 3.22171e-13
MA0055.1 0.00197
MA0057.1 0.875
MA0058.1 0.0466
MA0059.1 0.00815
MA0060.1 7.28869e-6
MA0061.1 0.0625
MA0062.2 1.8552e-11
MA0065.2 0.469
MA0066.1 0.25
MA0067.1 0.102
MA0068.1 0.493
MA0069.1 0.927
MA0070.1 0.272
MA0071.1 0.121
MA0072.1 0.864
MA0073.1 0.939
MA0074.1 0.312
MA0076.1 4.99031e-7
MA0077.1 0.228
MA0078.1 0.898
MA0079.2 0.0437
MA0080.2 1.58306e-7
MA0081.1 0.071
MA0083.1 7.58113e-8
MA0084.1 0.8
MA0087.1 0.417
MA0088.1 0.198
MA0090.1 0.247
MA0091.1 0.646
MA0092.1 0.922
MA0093.1 0.08
MA0099.2 0.636
MA0100.1 0.061
MA0101.1 0.0165
MA0102.2 0.185
MA0103.1 0.26
MA0104.2 0.442
MA0105.1 0.0448
MA0106.1 0.057
MA0107.1 0.0752
MA0108.2 7.99607e-47
MA0111.1 0.747
MA0112.2 0.00475
MA0113.1 0.176
MA0114.1 0.892
MA0115.1 0.479
MA0116.1 0.121
MA0117.1 0.684
MA0119.1 0.97
MA0122.1 0.829
MA0124.1 0.702
MA0125.1 0.105
MA0131.1 0.547
MA0135.1 0.00669
MA0136.1 1.39792e-10
MA0137.2 0.0161
MA0138.2 5.10351e-4
MA0139.1 0.0962
MA0140.1 0.0314
MA0141.1 0.118
MA0142.1 0.69
MA0143.1 0.0889
MA0144.1 0.139
MA0145.1 0.988
MA0146.1 0.277
MA0147.1 0.473
MA0148.1 0.271
MA0149.1 0.0214
MA0150.1 0.664
MA0152.1 0.943
MA0153.1 1.75853e-8
MA0154.1 0.48
MA0155.1 0.387
MA0156.1 1.39357e-11
MA0157.1 0.968
MA0159.1 0.0323
MA0160.1 0.565
MA0162.1 0.959
MA0163.1 0.00958
MA0164.1 0.286
MA0258.1 0.0939
MA0259.1 0.666



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs10514

Novel motif P-value
1 0.19
10 0.0148
100 0.441
101 0.73
102 0.346
103 0.0171
104 0.889
105 0.73
106 0.428
107 0.512
108 0.483
109 0.034
11 0.163
110 0.053
111 0.00375
112 0.0109
113 0.59
114 0.127
115 0.342
116 0.398
117 0.00344
118 0.371
119 0.15
12 0.751
120 0.816
121 0.828
122 0.455
123 0.232
124 0.683
125 0.146
126 0.11
127 0.208
128 0.627
129 0.628
13 2.81069e-4
130 0.603
131 0.0319
132 0.917
133 0.00874
134 0.342
135 0.8
136 0.239
137 0.368
138 0.616
139 0.0214
14 0.719
140 0.0656
141 0.49
142 0.622
143 0.601
144 0.914
145 0.014
146 0.302
147 0.656
148 0.0263
149 0.946
15 0.0448
150 0.247
151 0.505
152 0.926
153 0.31
154 0.134
155 0.137
156 0.0706
157 0.48
158 0.0115
159 0.00683
160 0.499
161 0.305
162 0.381
163 0.833
164 0.00514
165 0.76
166 0.463
167 0.0346
168 0.0189
169 0.0708
17 0.568
18 0.703
19 0.625
2 0.0969
20 0.00206
21 0.739
22 0.829
23 0.301
24 0.424
25 0.974
26 0.0341
27 0.274
28 0.365
29 0.00655
3 0.111
30 0.134
31 0.954
32 0.272
33 0.471
34 0.274
35 0.366
36 0.423
37 0.0381
38 0.511
39 0.366
4 0.973
40 0.806
41 0.961
42 0.398
43 0.288
44 0.446
45 0.399
46 0.295
47 0.376
48 0.164
49 0.0679
5 0.495
50 0.996
51 0.809
52 0.421
53 0.173
54 0.524
55 0.984
56 0.975
57 0.368
58 0.555
59 0.737
6 0.76
60 0.532
61 0.166
62 0.532
63 0.488
64 0.729
65 0.926
66 0.403
67 0.428
68 0.277
69 0.898
7 0.312
70 0.0256
71 0.0396
72 0.446
73 0.0293
74 0.983
75 0.0162
76 0.00204
77 0.521
78 0.173
79 0.702
8 0.231
80 0.272
81 0.994
82 0.251
83 0.55
84 0.331
85 0.23
86 0.347
87 0.119
88 0.119
89 0.925
9 0.691
90 0.038
91 0.866
92 0.798
93 0.113
94 0.35
95 0.0213
96 0.884
97 0.959
98 0.642
99 0.699



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs10514


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON: Anatomy
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000468 (multi-cellular organism)
0000479 (tissue)
0000922 (embryo)
0001062 (anatomical entity)

FF: FANTOM5
NA

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

NA