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FF:460-26E5

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Name:pancreas, embryo E16
Species:Mouse (Mus musculus)
Library ID:CNhs11003
Sample type:developmental
Genomic View: UCSC
MicroRNAs:Including candidate novel miRNAs(CAGE samples)
Excluding candidate novel miRNAs(CAGE samples)
CAGEd-oPOSSUM:link
Additional information
Sample information
strainC57BL/6J
tissuepancreas
dev stage16 days embryo
sexmixture
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

Accession numbers
MethodSample accession id
CAGE  SAMD00005291
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11003 CAGE DRX009057 DRR009931
Accession ID Mm9

Library idBAMCTSS
CNhs11003 DRZ001356 DRZ002739
Accession ID Mm10

Library idBAMCTSS
CNhs11003 DRZ012706 DRZ014089
Download raw sequence, BAM & CTSS
Mm9
FastaBAMCTSS
downloaddownloaddonwload
Mm10
BAMCTSS
downloaddonwload


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

CNhs11003

MCL coexpression id Coexpression dpi cluster scores median value
0 0
1 0
10 0
100 0
1000 0.0715
1001 0
1002 0.195
1003 --0.0468
1004 0
1005 0
1006 --0.143
1007 0.0266
1008 0
1009 --0.0572
101 0.07
1010 0.892
1011 --0.0628
1012 0
1013 0.501
1014 0.312
1015 --0.0645
1016 --0.096
1017 0
1018 0.139
1019 0
102 0
1020 0
1021 0.0263
1022 0.177
1023 0
1024 -5.586389e-4
1025 0.134
1026 0
1027 0
1028 0
1029 0.0188
103 0.0875
1030 0
1031 0.171
1032 --0.0375
1033 0
1034 0.244
1035 0
1036 0.102
1037 0
1038 --0.0375
1039 0.012
104 0
1040 0.00266
1041 0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11003

Jaspar motif P-value
MA0002.2 0.0146
MA0003.1 0.662
MA0004.1 0.0639
MA0006.1 0.362
MA0007.1 0.0962
MA0009.1 0.961
MA0014.1 0.738
MA0017.1 0.799
MA0018.2 4.57239e-4
MA0019.1 0.955
MA0024.1 0.04
MA0025.1 0.0239
MA0027.1 0.574
MA0028.1 0.00115
MA0029.1 0.11
MA0030.1 0.439
MA0031.1 0.3
MA0035.2 0.364
MA0038.1 0.806
MA0039.2 0.327
MA0040.1 0.118
MA0041.1 0.44
MA0042.1 0.865
MA0043.1 0.0201
MA0046.1 2.03731e-36
MA0047.2 3.00726e-4
MA0048.1 0.232
MA0050.1 1.93795e-4
MA0051.1 2.58282e-5
MA0052.1 2.73028e-5
MA0055.1 0.109
MA0057.1 0.895
MA0058.1 0.11
MA0059.1 2.20403e-5
MA0060.1 2.83854e-4
MA0061.1 0.76
MA0062.2 0.023
MA0065.2 0.172
MA0066.1 0.581
MA0067.1 0.0328
MA0068.1 0.215
MA0069.1 0.436
MA0070.1 0.73
MA0071.1 0.989
MA0072.1 0.897
MA0073.1 0.747
MA0074.1 0.0656
MA0076.1 0.017
MA0077.1 0.325
MA0078.1 0.98
MA0079.2 0.499
MA0080.2 0.00949
MA0081.1 0.0931
MA0083.1 0.0179
MA0084.1 0.499
MA0087.1 0.966
MA0088.1 0.0123
MA0090.1 0.723
MA0091.1 2.65379e-8
MA0092.1 0.314
MA0093.1 0.0544
MA0099.2 0.00196
MA0100.1 0.0132
MA0101.1 0.826
MA0102.2 0.0402
MA0103.1 1.16253e-6
MA0104.2 0.0364
MA0105.1 0.0945
MA0106.1 0.295
MA0107.1 0.183
MA0108.2 0.0477
MA0111.1 0.447
MA0112.2 0.00799
MA0113.1 0.247
MA0114.1 0.738
MA0115.1 0.897
MA0116.1 0.168
MA0117.1 0.865
MA0119.1 0.0187
MA0122.1 0.375
MA0124.1 0.813
MA0125.1 0.723
MA0131.1 0.148
MA0135.1 0.888
MA0136.1 0.00369
MA0137.2 0.0228
MA0138.2 0.0962
MA0139.1 0.046
MA0140.1 0.0513
MA0141.1 0.0384
MA0142.1 0.193
MA0143.1 0.395
MA0144.1 0.169
MA0145.1 0.273
MA0146.1 0.421
MA0147.1 0.00316
MA0148.1 2.39256e-4
MA0149.1 0.333
MA0150.1 0.146
MA0152.1 0.966
MA0153.1 1.47398e-15
MA0154.1 0.0743
MA0155.1 0.235
MA0156.1 0.47
MA0157.1 0.944
MA0159.1 0.213
MA0160.1 0.487
MA0162.1 0.329
MA0163.1 4.73432e-4
MA0164.1 0.211
MA0258.1 0.144
MA0259.1 0.0303



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11003

Novel motif P-value
1 0.231
10 0.0703
100 0.205
101 0.609
102 0.603
103 0.151
104 0.825
105 0.665
106 0.392
107 0.45
108 0.882
109 0.00265
11 0.294
110 0.0586
111 0.155
112 0.172
113 0.0213
114 0.627
115 0.807
116 0.122
117 0.0712
118 0.966
119 0.974
12 0.399
120 0.611
121 0.125
122 0.327
123 0.0627
124 0.232
125 0.552
126 0.0101
127 0.633
128 0.502
129 0.194
13 4.09986e-5
130 0.65
131 0.756
132 0.705
133 0.56
134 0.104
135 0.888
136 0.0488
137 0.806
138 0.0142
139 0.97
14 0.506
140 0.204
141 0.345
142 0.725
143 0.987
144 0.208
145 0.0502
146 0.772
147 0.225
148 0.281
149 0.364
15 0.247
150 0.442
151 0.768
152 0.125
153 0.683
154 0.93
155 0.88
156 0.0134
157 0.706
158 0.734
159 0.683
160 0.0335
161 0.118
162 0.452
163 0.202
164 0.405
165 0.691
166 0.396
167 0.711
168 0.719
169 0.113
17 0.468
18 0.468
19 0.0849
2 0.372
20 0.381
21 0.558
22 0.523
23 0.303
24 0.0258
25 0.924
26 5.6035e-4
27 0.863
28 0.202
29 0.0971
3 0.474
30 0.907
31 0.519
32 0.739
33 0.303
34 0.477
35 0.876
36 0.148
37 0.0544
38 0.978
39 0.248
4 0.352
40 0.291
41 0.0757
42 0.262
43 0.973
44 0.129
45 0.692
46 0.327
47 0.865
48 0.651
49 0.589
5 0.829
50 0.37
51 0.775
52 0.933
53 0.799
54 0.344
55 0.818
56 0.682
57 0.741
58 0.555
59 0.469
6 0.957
60 0.539
61 0.164
62 0.829
63 0.291
64 0.609
65 0.518
66 0.1
67 0.889
68 0.0219
69 0.984
7 0.0965
70 0.545
71 0.0014
72 0.837
73 0.065
74 0.64
75 0.141
76 0.648
77 0.323
78 0.355
79 0.158
8 0.101
80 0.133
81 0.176
82 0.332
83 0.919
84 0.0395
85 0.826
86 0.306
87 0.493
88 0.903
89 0.778
9 0.86
90 0.353
91 0.987
92 0.622
93 0.883
94 0.342
95 0.0439
96 0.906
97 0.335
98 0.567
99 0.669



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs11003


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0001264 (pancreas)
0002100 (trunk)
0000479 (tissue)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000299 (mouse embryonic day 16 sample)
0011263 (mouse pancreas- embryo E16 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

FF:0000294 (mouse embryonic day 11 sample)