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{{f5samples
 
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000015,UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000916,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0000949,UBERON:0001007,UBERON:0001041,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0002050,UBERON:0002100,UBERON:0002107,UBERON:0002330,UBERON:0002365,UBERON:0002368,UBERON:0002405,UBERON:0002417,UBERON:0002423,UBERON:0002530,UBERON:0002532,UBERON:0003104,UBERON:0003894,UBERON:0004119,UBERON:0004120,UBERON:0004161,UBERON:0004185,UBERON:0004921,UBERON:0005057,UBERON:0005172,UBERON:0005173,UBERON:0005177,UBERON:0005256,UBERON:0005423,UBERON:0006235,UBERON:0006925,UBERON:0007026,UBERON:0008835,UBERON:0008836,UBERON:0009142
+
|DRA_sample_Accession=CAGE@SAMD00005008
 +
|accession_numbers=CAGE;DRX009020;DRR009894;DRZ001319;DRZ002702;DRZ012669;DRZ014052
 +
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002107,UBERON:0002100,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423
 
|ancestors_in_cell_lineage_facet=
 
|ancestors_in_cell_lineage_facet=
 
|ancestors_in_disease_facet=
 
|ancestors_in_disease_facet=
 +
|ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000103,FF:0000001,FF:0000999,FF:0000292,FF:0000004,FF:0000300,FF:0011369
 
|comment=
 
|comment=
 
|created_by=
 
|created_by=
 
|creation_date=
 
|creation_date=
 +
|data_phase=2
 +
|datafreeze_phase=2
 
|def=
 
|def=
 
|expression_enrichment_score=chr8:87425854..87425891,+!p1@Klf1!2.30!196.57!Klf1;;chr15:103085660..103085681,-!p1@Nfe2!2.28!281.11!Nfe2;;chr7:122989594..122989626,-!p1@Sox6!1.88!75.62!Sox6;;chr2:28477452..28477483,-!p1@Gfi1b!1.83!81.23!Gfi1b;;chr4:114732112..114732158,+!p1@Tal1!1.81!135.97!Tal1;;chrX:7544943..7545001,-!p1@Gata1!1.80!62.38!Gata1;;chr7:122989632..122989668,-!p2@Sox6!1.77!57.80!Sox6;;chr15:103082088..103082136,-!p2@Nfe2!1.75!55.25!Nfe2;;chr7:19608891..19608895,-!p1@Foxa3!1.74!69.51!Foxa3;;chr9:96159147..96159204,+!p2@Tfdp2!1.69!87.59!Tfdp2;;chr15:103085690..103085710,-!p3@Nfe2!1.66!48.89!Nfe2;;chr9:96159225..96159249,+!p5@Tfdp2!1.59!42.01!Tfdp2;;chr9:74709695..74709722,+!p1@Onecut1!1.58!36.67!Onecut1;;chr10:80555320..80555378,-!p1@Creb3l3!1.49!34.37!Creb3l3;;chr2:163372884..163372904,+!p1@Hnf4a!1.49!29.79!Hnf4a;;chr4:87452180..87452196,-!p3@Mllt3!1.45!52.45!Mllt3;;chr11:11584970..11585030,+!p2@Ikzf1!1.44!37.94!Ikzf1;;chr4:87452200..87452229,-!p2@Mllt3!1.39!49.40!Mllt3;;chr8:87225670..87225697,+!p2@Lyl1!1.35!61.11!Lyl1;;chr7:17642177..17642223,-!p3@Hif3a!1.35!21.13!Hif3a;;chr15:85602655..85602680,+!p5@Ppara!1.22!15.53!Ppara;;chr10:88996336..88996380,-!p2@Nr1h4!1.20!18.33!Nr1h4;;chr10:79884592..79884621,-!p5@Tcf3!1.19!14.51!Tcf3;;chr4:135728181..135728203,+!p2@E2f2!1.18!18.59!E2f2;;chr8:87225702..87225726,+!p3@Lyl1!1.17!27.75!Lyl1;;chr10:88145766..88145770,-!p1@Spic!1.17!18.08!Spic;;chr4:87452236..87452249,-!p9@Mllt3!1.16!13.50!Mllt3;;chr9:96159116..96159130,+!p6@Tfdp2!1.15!16.30!Tfdp2;;chr7:17647736..17647772,-!p1@Hif3a!1.12!43.54!Hif3a;;chr9:96159210..96159221,+!p10@Tfdp2!1.10!11.71!Tfdp2;;chr4:135728473..135728494,+!p5@E2f2!1.09!11.20!E2f2;;chr4:135728581..135728668,+!p1@E2f2!1.07!52.20!E2f2;;chr9:96159133..96159145,+!p9@Tfdp2!1.05!10.19!Tfdp2;;chr11:90249521..90249551,-!p3@Hlf!1.05!10.19!Hlf;;chr14:63864056..63864102,-!p1@Gata4!1.03!17.06!Gata4;;chr6:83301229..83301242,+!p3@Bola3!1.03!9.68!Bola3;;chr13:31650185..31650201,+!p1@Foxq1!1.02!33.61!Foxq1;;chr16:38294860..38294924,-!p1@Nr1i2!1.02!9.42!Nr1i2;;chr1:191993385..191993405,-!p3@Prox1!1.02!9.42!Prox1;;chr10:88969376..88969395,-!p1@Nr1h4!1.02!9.42!Nr1h4;;chr10:88996295..88996335,-!p3@Nr1h4!1.01!10.95!Nr1h4;;chr2:91034924..91034946,-!p2@Nr1h3!1.00!11.20!Nr1h3;;chr7:122989676..122989687,-!p8@Sox6!1.00!8.91!Sox6;;chr18:64499674..64499696,+!p1@Onecut2!0.99!15.28!Onecut2;;chr15:85566184..85566238,+!p1@Ppara!0.99!13.24!Ppara;;chr5:135582751..135582788,+!p1@Mlxipl!0.98!34.88!Mlxipl;;chr5:65203599..65203617,+!p8@Klf3!0.98!14.26!Klf3;;chr4:114729957..114730012,+!p3@Tal1!0.98!8.66!Tal1;;chr2:166868994..166869023,-!p7@Znfx1!0.98!8.66!Znfx1;;chr6:83301243..83301258,+!p2@Bola3!0.96!8.15!Bola3;;chr5:115421065..115421088,-!p1@Hnf1a!0.95!7.89!Hnf1a;;chr2:163332558..163332596,+!p2@Hnf4a!0.95!7.89!Hnf4a;;chr15:103164702..103164778,-!p3@Zfp385a!0.94!9.17!Zfp385a;;chr2:147872790..147872821,-!p2@Foxa2!0.94!7.64!Foxa2;;chr6:86619104..86619119,-!p1@Mxd1!0.93!64.17!Mxd1;;chr10:22539932..22539956,-!p1@Tcf21!0.93!20.62!Tcf21;;chr11:16908650..16908690,-!p1@Plek!0.92!46.85!Plek;;chr2:77357622..77357704,-!p1@Zfp385b!0.92!20.12!Zfp385b;;chr1:173144100..173144138,+!p2@Nr1i3!0.92!7.38!Nr1i3;;chr19:37509324..37509337,+!p1@Hhex!0.91!52.71!Hhex;;chr15:85566537..85566552,+!p2@Ppara!0.91!7.13!Ppara;;chr16:92826249..92826325,-!p1@Runx1!0.88!16.81!Runx1;;chr8:59799772..59799789,+!p1@Hand2!0.86!18.84!Hand2;;chr4:114732159..114732166,+!p6@Tal1!0.85!6.11!Tal1;;chr7:35904304..35904320,+!p1@Cebpa!0.84!128.33!Cebpa;;chr14:32978970..32978984,+!p2@Gm6768,p2@Ncoa4!0.83!9.42!Ncoa4;;chr4:135736690..135736705,+!p6@E2f2!0.82!6.62!E2f2;;chr2:90936947..90936977,+!p2@Sfpi1!0.81!11.46!Sfpi1;;chr5:104183477..104183548,+!p6@Aff1!0.81!11.20!Aff1;;chr18:64499706..64499721,+!p2@Onecut2!0.81!7.89!Onecut2;;chr8:124806048..124806094,+!p1@Zfpm1!0.80!52.96!Zfpm1;;chr9:51021788..51021802,+!p1@Pou2af1!0.80!6.37!Pou2af1;;chr2:162880387..162880413,+!p1@Mybl2!0.79!35.14!Mybl2;;chr10:80598968..80599012,+!p5@Zbtb7a!0.79!6.87!Zbtb7a;;chr15:103085802..103085817,-!p4@Nfe2!0.79!6.62!Nfe2;;chr9:96159427..96159432,+!p11@Tfdp2!0.79!6.37!Tfdp2;;chr11:11586218..11586285,+!p1@Ikzf1!0.77!17.06!Ikzf1;;chr5:65203575..65203589,+!p11@Klf3!0.77!6.11!Klf3;;chr16:38294929..38294940,-!p2@Nr1i2!0.77!4.84!Nr1i2;;chr2:147871627..147871641,-!p1@Foxa2!0.77!4.84!Foxa2;;chr13:30841099..30841116,+!p1@Irf4!0.75!7.64!Irf4;;chr12:58646974..58647003,-!p1@Foxa1!0.73!6.11!Foxa1;;chr1:38721792..38721845,-!p1@Aff3!0.73!5.60!Aff3;;chr2:163372869..163372882,+!p3@Hnf4a!0.73!4.33!Hnf4a;;chr15:103085864..103085876,-!p5@Nfe2!0.73!4.33!Nfe2;;chr8:124806017..124806040,+!p2@Zfpm1!0.72!52.45!Zfpm1;;chr2:90936901..90936945,+!p1@Sfpi1!0.72!24.95!Sfpi1;;chr6:15135639..15135655,+!p9@Foxp2!0.72!5.35!Foxp2;;chr2:162880327..162880385,+!p2@Mybl2!0.71!30.56!Mybl2;;chr8:87643578..87643593,-!p1@Zfp791!0.71!9.17!Zfp791;;chr11:120491440..120491474,-!p3@Mafg!0.71!6.37!Mafg;;chr4:114730015..114730042,+!p7@Tal1!0.71!4.07!Tal1;;chr11:11585912..11585950,+!p6@Ikzf1!0.69!5.09!Ikzf1;;chr1:138857048..138857071,-!p2@Nr5a2!0.68!3.82!Nr5a2;;chr2:162880418..162880429,+!p4@Mybl2!0.67!4.84!Mybl2;;chr8:123608252..123608268,+!p1@Foxf1a!0.66!5.60!Foxf1a;;chr1:13364477..13364492,-!p6@Ncoa2!0.66!4.58!Ncoa2;;chr6:90415250..90415271,+!p4@Klf15!0.66!3.56!Klf15;;chr11:83664365..83664383,+!p1@Hnf1b!0.66!3.56!Hnf1b;;chr10:30522690..30522752,-!p2@Ncoa7!0.64!23.93!Ncoa7;;chr8:87225329..87225396,+!p1@Lyl1!0.64!14.51!Lyl1;;chr10:20880731..20880775,-!p2@Myb!0.64!7.89!Myb;;chr6:86619130..86619158,-!p2@Mxd1!0.63!55.25!Mxd1;;chr7:56136362..56136400,-!p1@E2f8!0.63!24.70!E2f8;;chr5:104183579..104183600,+!p9@Aff1!0.63!3.82!Aff1;;chr1:138846047..138846074,-!p5@Nr5a2!0.63!3.56!Nr5a2;;chr1:138857076..138857105,-!p1@Nr5a2!0.63!3.31!Nr5a2;;chr6:90415281..90415295,+!p5@Klf15!0.63!3.31!Klf15;;chr14:47896467..47896523,-!p1@Wdhd1!0.62!45.58!Wdhd1;;chr10:20880629..20880683,-!p1@Myb!0.62!10.44!Myb;;chr7:52071956..52071978,-!p1@Atf5!0.61!120.44!Atf5;;chr6:16848347..16848391,-!p1@Tfec!0.61!4.33!Tfec;;chr1:138857112..138857130,-!p7@Nr5a2!0.61!3.06!Nr5a2;;chr4:13678482..13678505,+!p9@Runx1t1!0.61!3.06!Runx1t1;;chr4:13678514..13678539,+!p14@Runx1t1!0.61!3.06!Runx1t1;;chr14:27813679..27813693,+!p2@Hesx1!0.61!3.06!Hesx1;;chr4:135728282..135728310,+!p4@E2f2!0.59!3.31!E2f2;;chr2:103264213..103264233,+!p1@Elf5!0.58!2.80!Elf5;;chr14:55330976..55330990,-!p1@Cebpe!0.58!2.80!Cebpe;;chr9:24578720..24578735,-!p1@Tbx20!0.58!2.80!Tbx20;;chr16:43247391..43247422,+!p12@Zbtb20!0.58!2.80!Zbtb20;;chr13:55431084..55431137,-!p1@Mxd3!0.57!25.97!Mxd3;;chr7:6649134..6649167,-!p1@Zim1!0.57!18.08!Zim1;;chr12:85534957..85535017,-!p2@C130039O16Rik!0.57!16.55!C130039O16Rik;;chr6:90412582..90412601,+!p1@Klf15!0.56!15.02!Klf15;;chr7:56136349..56136360,-!p5@E2f8!0.56!3.56!E2f8;;chr1:138845748..138845766,-!p4@Nr5a2!0.55!3.56!Nr5a2;;chr11:101413151..101413207,-!p1@Brca1!0.54!29.79!Brca1;;chr14:100683884..100683908,-!p4@Klf12!0.54!5.35!Klf12;;chr10:20880698..20880717,-!p3@Myb!0.54!4.33!Myb;;chr5:104183219..104183236,+!p2@Aff1!0.53!20.37!Aff1;;chr5:144951153..144951203,+!p1@Bhlha15!0.53!3.82!Bhlha15;;chr4:114730254..114730276,+!p2@Tal1!0.53!3.31!Tal1;;chr5:140267476..140267493,+!p1@Mafk!0.52!16.55!Mafk;;chr11:121380640..121380655,-!p1@Zfp750!0.52!4.33!Zfp750;;chr6:16848395..16848416,-!p2@Tfec!0.52!2.80!Tfec;;chr1:173144144..173144176,+!p1@Nr1i3!0.52!2.29!Nr1i3;;chr3:102768047..102768060,-!p1@Nr1h5!0.52!2.29!Nr1h5;;chr11:5420954..5420969,+!p2@Xbp1!0.51!35.90!Xbp1;;chr7:56137011..56137041,-!p2@E2f8!0.51!5.09!E2f8;;chr14:32979290..32979309,+!p3@Gm6768,p3@Ncoa4!0.51!2.80!Ncoa4;;chr5:65194752..65194769,+!p1@Klf3!0.50!96.50!Klf3;;chr17:56970339..56970428,-!p1@Rfx2!0.50!8.40!Rfx2;;chr11:121380611..121380625,-!p3@Zfp750!0.50!2.80!Zfp750;;chr17:56970481..56970551,-!p2@Rfx2!0.49!8.15!Rfx2;;chr13:112476264..112476282,+!p3@Mier3!0.49!3.31!Mier3;;chr15:85566051..85566080,+!p4@Ppara!0.49!2.55!Ppara;;chr8:107821563..107821642,+!p1@E2f4!0.48!76.64!E2f4;;chr11:23980664..23980706,+!p2@Bcl11a!0.48!11.46!Bcl11a;;chr4:63064364..63064384,-!p1@Akna!0.48!7.38!Akna;;chr11:11585678..11585745,+!p5@Ikzf1!0.48!3.31!Ikzf1;;chr15:85566014..85566045,+!p3@Ppara!0.48!3.06!Ppara;;chr17:48015645..48015689,-!p9@Foxp4!0.48!2.80!Foxp4;;chr15:85602581..85602598,+!p8@Ppara!0.48!2.04!Ppara;;chr15:85566241..85566253,+!p6@Ppara!0.48!2.04!Ppara;;chr15:103083199..103083215,-!p8@Nfe2!0.48!2.04!Nfe2;;chr5:108155037..108155060,-!p2@Gfi1!0.48!2.04!Gfi1;;chr11:60023912..60023930,-!p1@Srebf1!0.47!64.93!Srebf1;;chr6:72849280..72849297,-!p6@Kcmf1!0.47!4.58!Kcmf1;;chr2:38206744..38206766,+!p1@Lhx2!0.47!2.55!Lhx2;;chr10:12810631..12810649,+!p1@Plagl1!0.46!69.00!Plagl1;;chr15:79177964..79177986,+!p1@Maff!0.46!8.40!Maff;;chr2:90936978..90937023,+!p3@Sfpi1!0.46!4.33!Sfpi1;;chr1:191994550..191994623,-!p1@Prox1!0.45!17.31!Prox1;;chr3:95238432..95238455,+!p2@Arnt!0.45!14.26!Arnt;;chr13:72101161..72101177,-!p2@Irx1!0.45!2.80!Irx1;;chr5:34163023..34163090,+!p2@Whsc1!0.44!15.53!Whsc1;;chr6:99216488..99216534,-!p2@Foxp1!0.44!6.37!Foxp1;;chr2:148506935..148506954,+!p2@Gzf1!0.44!4.33!Gzf1;;chr1:138846079..138846103,-!p6@Nr5a2!0.44!1.78!Nr5a2;;chr10:5734677..5734702,-!p4@Esr1!0.44!1.78!Esr1;;chr15:103083245..103083260,-!p7@Nfe2!0.44!1.78!Nfe2;;chr4:44723559..44723593,-!p1@Pax5!0.44!1.78!Pax5;;chr4:135736707..135736724,+!p8@E2f2!0.44!1.78!E2f2;;chr8:87225806..87225809,+!p4@Lyl1!0.44!1.78!Lyl1;;chrX:98449898..98449913,+!p2@Foxo4!0.43!7.13!Foxo4;;chr11:102178005..102178022,-!p8@Ubtf!0.43!3.31!Ubtf;;chr10:80040030..80040072,-!p1@Klf16!0.42!47.62!Klf16;;chr6:144730427..144730508,-!p1@Sox5!0.42!14.00!Sox5;;chr6:29476690..29476724,+!p1@Irf5!0.42!10.44!Irf5;;chr10:41995430..41995458,-!p3@Foxo3!0.42!5.60!Foxo3;;chr11:90250944..90250982,-!p2@Hlf!0.42!3.31!Hlf;;chr17:33766353..33766393,+!p2@Zfp414!0.41!5.86!Zfp414;;chr4:62626682..62626705,+!p2@Zfp618!0.41!4.58!Zfp618;;chr13:37918684..37918701,+!p12@Rreb1!0.41!2.04!Rreb1;;chr9:69137716..69137744,+!p1@Rora!0.40!13.75!Rora;;chr10:79389784..79389833,+!p1@Arid3a!0.40!11.46!Arid3a;;chr10:305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|expression_enrichment_score=chr8:87425854..87425891,+!p1@Klf1!2.30!196.57!Klf1;;chr15:103085660..103085681,-!p1@Nfe2!2.28!281.11!Nfe2;;chr7:122989594..122989626,-!p1@Sox6!1.88!75.62!Sox6;;chr2:28477452..28477483,-!p1@Gfi1b!1.83!81.23!Gfi1b;;chr4:114732112..114732158,+!p1@Tal1!1.81!135.97!Tal1;;chrX:7544943..7545001,-!p1@Gata1!1.80!62.38!Gata1;;chr7:122989632..122989668,-!p2@Sox6!1.77!57.80!Sox6;;chr15:103082088..103082136,-!p2@Nfe2!1.75!55.25!Nfe2;;chr7:19608891..19608895,-!p1@Foxa3!1.74!69.51!Foxa3;;chr9:96159147..96159204,+!p2@Tfdp2!1.69!87.59!Tfdp2;;chr15:103085690..103085710,-!p3@Nfe2!1.66!48.89!Nfe2;;chr9:96159225..96159249,+!p5@Tfdp2!1.59!42.01!Tfdp2;;chr9:74709695..74709722,+!p1@Onecut1!1.58!36.67!Onecut1;;chr10:80555320..80555378,-!p1@Creb3l3!1.49!34.37!Creb3l3;;chr2:163372884..163372904,+!p1@Hnf4a!1.49!29.79!Hnf4a;;chr4:87452180..87452196,-!p3@Mllt3!1.45!52.45!Mllt3;;chr11:11584970..11585030,+!p2@Ikzf1!1.44!37.94!Ikzf1;;chr4:87452200..87452229,-!p2@Mllt3!1.39!49.40!Mllt3;;chr8:87225670..87225697,+!p2@Lyl1!1.35!61.11!Lyl1;;chr7:17642177..17642223,-!p3@Hif3a!1.35!21.13!Hif3a;;chr15:85602655..85602680,+!p5@Ppara!1.22!15.53!Ppara;;chr10:88996336..88996380,-!p2@Nr1h4!1.20!18.33!Nr1h4;;chr10:79884592..79884621,-!p5@Tcf3!1.19!14.51!Tcf3;;chr4:135728181..135728203,+!p2@E2f2!1.18!18.59!E2f2;;chr8:87225702..87225726,+!p3@Lyl1!1.17!27.75!Lyl1;;chr10:88145766..88145770,-!p1@Spic!1.17!18.08!Spic;;chr4:87452236..87452249,-!p9@Mllt3!1.16!13.50!Mllt3;;chr9:96159116..96159130,+!p6@Tfdp2!1.15!16.30!Tfdp2;;chr7:17647736..17647772,-!p1@Hif3a!1.12!43.54!Hif3a;;chr9:96159210..96159221,+!p10@Tfdp2!1.10!11.71!Tfdp2;;chr4:135728473..135728494,+!p5@E2f2!1.09!11.20!E2f2;;chr4:135728581..135728668,+!p1@E2f2!1.07!52.20!E2f2;;chr9:96159133..96159145,+!p9@Tfdp2!1.05!10.19!Tfdp2;;chr11:90249521..90249551,-!p3@Hlf!1.05!10.19!Hlf;;chr14:63864056..63864102,-!p1@Gata4!1.03!17.06!Gata4;;chr6:83301229..83301242,+!p3@Bola3!1.03!9.68!Bola3;;chr13:31650185..31650201,+!p1@Foxq1!1.02!33.61!Foxq1;;chr16:38294860..38294924,-!p1@Nr1i2!1.02!9.42!Nr1i2;;chr1:191993385..191993405,-!p3@Prox1!1.02!9.42!Prox1;;chr10:88969376..88969395,-!p1@Nr1h4!1.02!9.42!Nr1h4;;chr10:88996295..88996335,-!p3@Nr1h4!1.01!10.95!Nr1h4;;chr2:91034924..91034946,-!p2@Nr1h3!1.00!11.20!Nr1h3;;chr7:122989676..122989687,-!p8@Sox6!1.00!8.91!Sox6;;chr18:64499674..64499696,+!p1@Onecut2!0.99!15.28!Onecut2;;chr15:85566184..85566238,+!p1@Ppara!0.99!13.24!Ppara;;chr5:135582751..135582788,+!p1@Mlxipl!0.98!34.88!Mlxipl;;chr5:65203599..65203617,+!p8@Klf3!0.98!14.26!Klf3;;chr4:114729957..114730012,+!p3@Tal1!0.98!8.66!Tal1;;chr2:166868994..166869023,-!p7@Znfx1!0.98!8.66!Znfx1;;chr6:83301243..83301258,+!p2@Bola3!0.96!8.15!Bola3;;chr5:115421065..115421088,-!p1@Hnf1a!0.95!7.89!Hnf1a;;chr2:163332558..163332596,+!p2@Hnf4a!0.95!7.89!Hnf4a;;chr15:103164702..103164778,-!p3@Zfp385a!0.94!9.17!Zfp385a;;chr2:147872790..147872821,-!p2@Foxa2!0.94!7.64!Foxa2;;chr6:86619104..86619119,-!p1@Mxd1!0.93!64.17!Mxd1;;chr10:22539932..22539956,-!p1@Tcf21!0.93!20.62!Tcf21;;chr11:16908650..16908690,-!p1@Plek!0.92!46.85!Plek;;chr2:77357622..77357704,-!p1@Zfp385b!0.92!20.12!Zfp385b;;chr1:173144100..173144138,+!p2@Nr1i3!0.92!7.38!Nr1i3;;chr19:37509324..37509337,+!p1@Hhex!0.91!52.71!Hhex;;chr15:85566537..85566552,+!p2@Ppara!0.91!7.13!Ppara;;chr16:92826249..92826325,-!p1@Runx1!0.88!16.81!Runx1;;chr8:59799772..59799789,+!p1@Hand2!0.86!18.84!Hand2;;chr4:114732159..114732166,+!p6@Tal1!0.85!6.11!Tal1;;chr7:35904304..35904320,+!p1@Cebpa!0.84!128.33!Cebpa;;chr14:32978970..32978984,+!p2@Gm6768,p2@Ncoa4!0.83!9.42!Ncoa4;;chr4:135736690..135736705,+!p6@E2f2!0.82!6.62!E2f2;;chr2:90936947..90936977,+!p2@Sfpi1!0.81!11.46!Sfpi1;;chr5:104183477..104183548,+!p6@Aff1!0.81!11.20!Aff1;;chr18:64499706..64499721,+!p2@Onecut2!0.81!7.89!Onecut2;;chr8:124806048..124806094,+!p1@Zfpm1!0.80!52.96!Zfpm1;;chr9:51021788..51021802,+!p1@Pou2af1!0.80!6.37!Pou2af1;;chr2:162880387..162880413,+!p1@Mybl2!0.79!35.14!Mybl2;;chr10:80598968..80599012,+!p5@Zbtb7a!0.79!6.87!Zbtb7a;;chr15:103085802..103085817,-!p4@Nfe2!0.79!6.62!Nfe2;;chr9:96159427..96159432,+!p11@Tfdp2!0.79!6.37!Tfdp2;;chr11:11586218..11586285,+!p1@Ikzf1!0.77!17.06!Ikzf1;;chr5:65203575..65203589,+!p11@Klf3!0.77!6.11!Klf3;;chr16:38294929..38294940,-!p2@Nr1i2!0.77!4.84!Nr1i2;;chr2:147871627..147871641,-!p1@Foxa2!0.77!4.84!Foxa2;;chr13:30841099..30841116,+!p1@Irf4!0.75!7.64!Irf4;;chr12:58646974..58647003,-!p1@Foxa1!0.73!6.11!Foxa1;;chr1:38721792..38721845,-!p1@Aff3!0.73!5.60!Aff3;;chr2:163372869..163372882,+!p3@Hnf4a!0.73!4.33!Hnf4a;;chr15:103085864..103085876,-!p5@Nfe2!0.73!4.33!Nfe2;;chr8:124806017..124806040,+!p2@Zfpm1!0.72!52.45!Zfpm1;;chr2:90936901..90936945,+!p1@Sfpi1!0.72!24.95!Sfpi1;;chr6:15135639..15135655,+!p9@Foxp2!0.72!5.35!Foxp2;;chr2:162880327..162880385,+!p2@Mybl2!0.71!30.56!Mybl2;;chr8:87643578..87643593,-!p1@Zfp791!0.71!9.17!Zfp791;;chr11:120491440..120491474,-!p3@Mafg!0.71!6.37!Mafg;;chr4:114730015..114730042,+!p7@Tal1!0.71!4.07!Tal1;;chr11:11585912..11585950,+!p6@Ikzf1!0.69!5.09!Ikzf1;;chr1:138857048..138857071,-!p2@Nr5a2!0.68!3.82!Nr5a2;;chr2:162880418..162880429,+!p4@Mybl2!0.67!4.84!Mybl2;;chr8:123608252..123608268,+!p1@Foxf1a!0.66!5.60!Foxf1a;;chr1:13364477..13364492,-!p6@Ncoa2!0.66!4.58!Ncoa2;;chr6:90415250..90415271,+!p4@Klf15!0.66!3.56!Klf15;;chr11:83664365..83664383,+!p1@Hnf1b!0.66!3.56!Hnf1b;;chr10:30522690..30522752,-!p2@Ncoa7!0.64!23.93!Ncoa7;;chr8:87225329..87225396,+!p1@Lyl1!0.64!14.51!Lyl1;;chr10:20880731..20880775,-!p2@Myb!0.64!7.89!Myb;;chr6:86619130..86619158,-!p2@Mxd1!0.63!55.25!Mxd1;;chr7:56136362..56136400,-!p1@E2f8!0.63!24.70!E2f8;;chr5:104183579..104183600,+!p9@Aff1!0.63!3.82!Aff1;;chr1:138846047..138846074,-!p5@Nr5a2!0.63!3.56!Nr5a2;;chr1:138857076..138857105,-!p1@Nr5a2!0.63!3.31!Nr5a2;;chr6:90415281..90415295,+!p5@Klf15!0.63!3.31!Klf15;;chr14:47896467..47896523,-!p1@Wdhd1!0.62!45.58!Wdhd1;;chr10:20880629..20880683,-!p1@Myb!0.62!10.44!Myb;;chr7:52071956..52071978,-!p1@Atf5!0.61!120.44!Atf5;;chr6:16848347..16848391,-!p1@Tfec!0.61!4.33!Tfec;;chr1:138857112..138857130,-!p7@Nr5a2!0.61!3.06!Nr5a2;;chr4:13678482..13678505,+!p9@Runx1t1!0.61!3.06!Runx1t1;;chr4:13678514..13678539,+!p14@Runx1t1!0.61!3.06!Runx1t1;;chr14:27813679..27813693,+!p2@Hesx1!0.61!3.06!Hesx1;;chr4:135728282..135728310,+!p4@E2f2!0.59!3.31!E2f2;;chr2:103264213..103264233,+!p1@Elf5!0.58!2.80!Elf5;;chr14:55330976..55330990,-!p1@Cebpe!0.58!2.80!Cebpe;;chr9:24578720..24578735,-!p1@Tbx20!0.58!2.80!Tbx20;;chr16:43247391..43247422,+!p12@Zbtb20!0.58!2.80!Zbtb20;;chr13:55431084..55431137,-!p1@Mxd3!0.57!25.97!Mxd3;;chr7:6649134..6649167,-!p1@Zim1!0.57!18.08!Zim1;;chr12:85534957..85535017,-!p2@C130039O16Rik!0.57!16.55!C130039O16Rik;;chr6:90412582..90412601,+!p1@Klf15!0.56!15.02!Klf15;;chr7:56136349..56136360,-!p5@E2f8!0.56!3.56!E2f8;;chr1:138845748..138845766,-!p4@Nr5a2!0.55!3.56!Nr5a2;;chr11:101413151..101413207,-!p1@Brca1!0.54!29.79!Brca1;;chr14:100683884..100683908,-!p4@Klf12!0.54!5.35!Klf12;;chr10:20880698..20880717,-!p3@Myb!0.54!4.33!Myb;;chr5:104183219..104183236,+!p2@Aff1!0.53!20.37!Aff1;;chr5:144951153..144951203,+!p1@Bhlha15!0.53!3.82!Bhlha15;;chr4:114730254..114730276,+!p2@Tal1!0.53!3.31!Tal1;;chr5:140267476..140267493,+!p1@Mafk!0.52!16.55!Mafk;;chr11:121380640..121380655,-!p1@Zfp750!0.52!4.33!Zfp750;;chr6:16848395..16848416,-!p2@Tfec!0.52!2.80!Tfec;;chr1:173144144..173144176,+!p1@Nr1i3!0.52!2.29!Nr1i3;;chr3:102768047..102768060,-!p1@Nr1h5!0.52!2.29!Nr1h5;;chr11:5420954..5420969,+!p2@Xbp1!0.51!35.90!Xbp1;;chr7:56137011..56137041,-!p2@E2f8!0.51!5.09!E2f8;;chr14:32979290..32979309,+!p3@Gm6768,p3@Ncoa4!0.51!2.80!Ncoa4;;chr5:65194752..65194769,+!p1@Klf3!0.50!96.50!Klf3;;chr17:56970339..56970428,-!p1@Rfx2!0.50!8.40!Rfx2;;chr11:121380611..121380625,-!p3@Zfp750!0.50!2.80!Zfp750;;chr17:56970481..56970551,-!p2@Rfx2!0.49!8.15!Rfx2;;chr13:112476264..112476282,+!p3@Mier3!0.49!3.31!Mier3;;chr15:85566051..85566080,+!p4@Ppara!0.49!2.55!Ppara;;chr8:107821563..107821642,+!p1@E2f4!0.48!76.64!E2f4;;chr11:23980664..23980706,+!p2@Bcl11a!0.48!11.46!Bcl11a;;chr4:63064364..63064384,-!p1@Akna!0.48!7.38!Akna;;chr11:11585678..11585745,+!p5@Ikzf1!0.48!3.31!Ikzf1;;chr15:85566014..85566045,+!p3@Ppara!0.48!3.06!Ppara;;chr17:48015645..48015689,-!p9@Foxp4!0.48!2.80!Foxp4;;chr15:85602581..85602598,+!p8@Ppara!0.48!2.04!Ppara;;chr15:85566241..85566253,+!p6@Ppara!0.48!2.04!Ppara;;chr15:103083199..103083215,-!p8@Nfe2!0.48!2.04!Nfe2;;chr5:108155037..108155060,-!p2@Gfi1!0.48!2.04!Gfi1;;chr11:60023912..60023930,-!p1@Srebf1!0.47!64.93!Srebf1;;chr6:72849280..72849297,-!p6@Kcmf1!0.47!4.58!Kcmf1;;chr2:38206744..38206766,+!p1@Lhx2!0.47!2.55!Lhx2;;chr10:12810631..12810649,+!p1@Plagl1!0.46!69.00!Plagl1;;chr15:79177964..79177986,+!p1@Maff!0.46!8.40!Maff;;chr2:90936978..90937023,+!p3@Sfpi1!0.46!4.33!Sfpi1;;chr1:191994550..191994623,-!p1@Prox1!0.45!17.31!Prox1;;chr3:95238432..95238455,+!p2@Arnt!0.45!14.26!Arnt;;chr13:72101161..72101177,-!p2@Irx1!0.45!2.80!Irx1;;chr5:34163023..34163090,+!p2@Whsc1!0.44!15.53!Whsc1;;chr6:99216488..99216534,-!p2@Foxp1!0.44!6.37!Foxp1;;chr2:148506935..148506954,+!p2@Gzf1!0.44!4.33!Gzf1;;chr1:138846079..138846103,-!p6@Nr5a2!0.44!1.78!Nr5a2;;chr10:5734677..5734702,-!p4@Esr1!0.44!1.78!Esr1;;chr15:103083245..103083260,-!p7@Nfe2!0.44!1.78!Nfe2;;chr4:44723559..44723593,-!p1@Pax5!0.44!1.78!Pax5;;chr4:135736707..135736724,+!p8@E2f2!0.44!1.78!E2f2;;chr8:87225806..87225809,+!p4@Lyl1!0.44!1.78!Lyl1;;chrX:98449898..98449913,+!p2@Foxo4!0.43!7.13!Foxo4;;chr11:102178005..102178022,-!p8@Ubtf!0.43!3.31!Ubtf;;chr10:80040030..80040072,-!p1@Klf16!0.42!47.62!Klf16;;chr6:144730427..144730508,-!p1@Sox5!0.42!14.00!Sox5;;chr6:29476690..29476724,+!p1@Irf5!0.42!10.44!Irf5;;chr10:41995430..41995458,-!p3@Foxo3!0.42!5.60!Foxo3;;chr11:90250944..90250982,-!p2@Hlf!0.42!3.31!Hlf;;chr17:33766353..33766393,+!p2@Zfp414!0.41!5.86!Zfp414;;chr4:62626682..62626705,+!p2@Zfp618!0.41!4.58!Zfp618;;chr13:37918684..37918701,+!p12@Rreb1!0.41!2.04!Rreb1;;chr9:69137716..69137744,+!p1@Rora!0.40!13.75!Rora;;chr10:79389784..79389833,+!p1@Arid3a!0.40!11.46!Arid3a;;chr10:305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881887,+!p2@Irx5!0.07!0.25!Irx5;;chr17:57170891..57170961,-!p1@Khsrp!0.06!92.68!Khsrp;;chr19:9016355..9016540,+!p1@Mta2!0.06!85.30!Mta2;;chr2:168055853..168055886,-!p1@Adnp,p1@Dpm1!0.06!69.26!Adnp;;chr17:34729193..34729274,+!p1@Pbx2!0.06!48.38!Pbx2;;chr2:167514456..167514473,+!p1@Cebpb!0.06!46.09!Cebpb;;chr5:138187195..138187255,+!p1@Tsc22d4!0.06!43.54!Tsc22d4;;chr5:77524250..77524300,-!p1@Hopx!0.06!20.37!Hopx;;chr7:117205217..117205246,+!p1@Zfp143!0.06!19.61!Zfp143;;chr13:21494557..21494617,-!p1@Zkscan3!0.06!18.33!Zkscan3;;chr17:48061381..48061399,-!p1@Foxp4!0.06!10.95!Foxp4;;chr6:72739185..72739232,-!p1@Tcf7l1!0.06!9.93!Tcf7l1;;chr4:124479787..124479832,+!p1@Mtf1!0.06!9.42!Mtf1;;chr3:14578609..14578687,+!p1@E2f5!0.06!9.17!E2f5;;chr14:31832369..31832400,+!p3@Pbrm1!0.06!8.15!Pbrm1;;chr17:88840082..88840127,+!p1@Foxn2!0.06!6.62!Foxn2;;chr1:194979315..194979359,+!p1@Irf6!0.06!5.60!Irf6;;chr4:43575544..43575565,+!p2@Creb3!0.06!5.35!Creb3;;chr4:3865501..3865548,-!p1@Plag1!0.06!4.58!Plag1;;chr2:119698241..119698291,+!p2@Mga!0.06!4.33!Mga;;chr16:55973950..55973977,+!p4@Rpl24,p4@Zbtb11!0.06!4.07!Zbtb11;;chrX:98449805..98449834,+!p3@Foxo4!0.06!2.04!Foxo4;;chr10:114821393..114821431,-!p5@Thap2!0.06!2.04!Thap2;;chr19:5637489..5637500,+!p5@Rela!0.06!1.78!Rela;;chr8:72498246..72498263,-!p11@Gatad2a!0.06!1.53!Gatad2a;;chr11:70501599..70501634,-!p2@Camta2,p2@LOC100048818!0.06!1.27!Camta2;;chr3:135354349..135354371,-!p6@Nfkb1!0.06!1.27!Nfkb1;;chr9:72122708..72122720,+!p3@Zfp280d!0.06!1.02!Zfp280d;;chr1:133914326..133914346,+!p8@Elk4!0.06!1.02!Elk4;;chr17:35031589..35031630,+!p2@Zbtb12!0.06!1.02!Zbtb12;;chr16:43363968..43364001,+!p7@Zbtb20!0.06!1.02!Zbtb20;;chr15:98701606..98701618,-!p1@Mll2!0.06!1.02!Mll2;;chr2:104966766..104966786,+!p1@Wt1!0.06!0.76!Wt1;;chrX:7339674..7339688,+!p6@Tfe3!0.06!0.76!Tfe3;;chr5:92391948..92391968,+!p3@Thap6!0.06!0.76!Thap6;;chr11:96213434..96213452,+!p@chr11:96213434..96213452,+!0.06!0.51!Hoxb2;;chr8:90483433..90483457,-!p2@Zfp423!0.06!0.51!Zfp423;;chr13:59924409..59924418,-!p6@Zcchc6!0.06!0.51!Zcchc6;;chr1:64168228..64168250,-!p7@Klf7!0.06!0.51!Klf7;;chr2:17977331..17977360,+!p11@Mllt10!0.06!0.25!Mllt10;;chr11:44431191..44431205,+!p11@Ebf1!0.06!0.25!Ebf1;;chr2:90922519..90922544,+!p6@Sfpi1!0.06!0.25!Sfpi1;;chr13:58503837..58503885,-!p1@Hnrnpk!0.05!289.76!Hnrnpk;;chr12:25780945..25780961,-!p1@Id2!0.05!172.38!Id2;;chr11:95171500..95171527,-!p1@Myst2!0.05!62.13!Myst2;;chr13:58503810..58503833,-!p2@Hnrnpk!0.05!53.73!Hnrnpk;;chr8:72663586..72663633,+!p1@2310045N01Rik,p1@Mef2b!0.05!50.93!Mef2b;;chr10:70700783..70700832,-!p1@Tfam!0.05!37.68!Tfam;;chr11:58136797..58136859,-!p1@Zfp672!0.05!23.43!Zfp672;;chr7:147222284..147222351,+!p1@Zfp511!0.05!22.66!Zfp511;;chr1:162836503..162836591,+!p1@Rc3h1!0.05!17.31!Rc3h1;;chr1:75188717..75188804,+!p1@ENSMUST00000125384,p1@ENSMUST00000127625,p1@ENSMUST00000131788,p1@ENSMUST00000134233,p1@ENSMUST00000134378,p1@ENSMUST00000145459,p1@ENSMUST00000151887,p1@ENSMUST00000152233!0.05!13.24!Ankzf1;;chr5:142939972..142940026,+!p1@C330006K01Rik!0.05!12.73!C330006K01Rik;;chr12:72116953..72117050,+!p1@Arid4a!0.05!11.46!Arid4a;;chr7:20408047..20408125,-!p1@Bcl3!0.05!10.95!Bcl3;;chr7:4866804..4866832,+!p1@Zfp628!0.05!10.69!Zfp628;;chr4:32325688..32325777,+!p1@Bach2!0.05!8.15!Bach2;;chr15:81633165..81633188,+!p2@Tef!0.05!7.64!Tef;;chr16:3884472..3884572,-!p1@Zfp597!0.05!7.38!Zfp597;;chr7:71083876..71083932,-!p2@Klf13!0.05!7.38!Klf13;;chr7:138554009..138554034,-!p1@Ikzf5!0.05!5.60!Ikzf5;;chr9:21420572..21420591,+!p2@Smarca4!0.05!4.84!Smarca4;;chr3:95021612..95021650,-!p2@Gabpb2!0.05!4.33!Gabpb2;;chr17:35031460..35031518,+!p1@Zbtb12!0.05!4.33!Zbtb12;;
 +
|ffid_belonging_in_development=UBERON:0001041,UBERON:0002532,UBERON:0006595,UBERON:0003104,UBERON:0004161,UBERON:0009497,UBERON:0010316,FF:0000294
 
|fonse_cell_line=
 
|fonse_cell_line=
 
|fonse_cell_line_closure=
 
|fonse_cell_line_closure=
Line 36: Line 42:
 
|has_quality=
 
|has_quality=
 
|id=FF:481-18A3
 
|id=FF:481-18A3
|is_a=EFO:0002091;;FF:0000004;;FF:0000103;;FF:0011369
+
|is_a=EFO:0002091;;FF:0011369
 +
|is_obsolete=
 +
|library_id=CNhs10510
 +
|library_id_phase_based=2:CNhs10510
 +
|microRNAs=
 +
|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;481
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;481
 +
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/liver%252c%2520embryo%2520E17.CNhs10510.481-18A3.mm10.nobarcode.bam
 +
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/liver%252c%2520embryo%2520E17.CNhs10510.481-18A3.mm10.nobarcode.ctss.bed.gz
 +
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/liver%252c%2520embryo%2520E17.CNhs10510.481-18A3.mm9.nobarcode.bam
 +
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/liver%252c%2520embryo%2520E17.CNhs10510.481-18A3.mm9.ctss.bed.gz
 +
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/liver%252c%2520embryo%2520E17.CNhs10510.481-18A3.mm9.nobarcode.rdna.fa.gz
 
|name=liver, embryo E17
 
|name=liver, embryo E17
 
|namespace=FANTOM5
 
|namespace=FANTOM5
Line 42: Line 60:
 
|profile_cagescan=,,,
 
|profile_cagescan=,,,
 
|profile_hcage=CNhs10510,LSID648,release008,COMPLETED
 
|profile_hcage=CNhs10510,LSID648,release008,COMPLETED
|profile_rnaseq=,,,
+
|profile_rnaseq=
 
|profile_srnaseq=,,,
 
|profile_srnaseq=,,,
 +
|repeat_enrich_byfamily=0.172684402844081,0,0,0,0,0.00802810739574445,-0.209563799149954,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,0.16473078120579,0,0,0,0.178761674734239,0,0,0,0,0,0,0,0,0.0086226932382149,-0.0759770259611025,0,0,0,0.802578275297589,0,-0.036831392474749,-0.070177065330638,0.291587790350744,0.355822450649421,-0.171354406004359,0,0,0,0,0,0,0,0,0,0,0,0,0.180462886472722,0.098514232005992,0,0,0,0.135914719651364,0,-0.0814394494477905,0,0,0,0.0350410499245382,0.133765935811725,0.0206706319631565,0.102045244373262,0,0.0553932938975473,-0.10655705223902,0,0.305029486812785,0,-0.0509094078059038,-0.0779800513928913,-0.151498287589458,0.0196826371660846,0,0,0,0,0.049257116002996,0,0.00694769163541491,0.17131737141071,0.0352264845813859,0,0,0,0,0
 
|rna_box=18
 
|rna_box=18
 
|rna_catalog_number=
 
|rna_catalog_number=
Line 57: Line 76:
 
|rna_weight_ug=
 
|rna_weight_ug=
 
|sample_age=
 
|sample_age=
 +
|sample_category=developmental
 
|sample_cell_catalog=
 
|sample_cell_catalog=
 
|sample_cell_line=
 
|sample_cell_line=
Line 76: Line 96:
 
|sample_tissue=liver
 
|sample_tissue=liver
 
|top_motifs=GATA6:3.49120088196;FOX{F1,F2,J1}:2.79076593464;PAX1,9:2.62792505302;FOXA2:1.91008243719;FOX{D1,D2}:1.84961188374;HNF1A:1.7572703803;CEBPA,B_DDIT3:1.65000991264;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.47087380243;PBX1:1.2468324306;ZNF423:1.23902519824;NFIL3:1.23364368469;HNF4A_NR2F1,2:1.10308263342;HLF:1.09745239939;E2F1..5:1.07870245072;NFY{A,B,C}:1.07389430298;NKX2-2,8:1.00670021446;STAT5{A,B}:0.930356777715;NR6A1:0.879096427377;STAT2,4,6:0.847626720745;ONECUT1,2:0.812296708908;FOXM1:0.799571021054;CDX1,2,4:0.695283388652;TLX2:0.632759760634;CUX2:0.609743379819;NANOG{mouse}:0.586396942425;NFE2:0.575891992259;NFIX:0.569691034236;GFI1:0.564487447822;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.534820149972;NFE2L2:0.500927858577;HOXA9_MEIS1:0.46907676904;EN1,2:0.462982907102;FOXO1,3,4:0.461646979807;GZF1:0.444186232911;MYB:0.438115210739;TBP:0.429614222108;ARID5B:0.396398754194;EBF1:0.394471009057;SPIB:0.367026150914;RXRA_VDR{dimer}:0.342503404234;YY1:0.342225892372;ZNF148:0.323393837978;NKX3-2:0.279254674443;ELF1,2,4:0.273764688747;PDX1:0.272566234381;ETS1,2:0.259050440572;SPI1:0.226593232723;POU1F1:0.20933508622;BACH2:0.186722276414;ALX4:0.147467642342;RORA:0.104307213857;DBP:0.0991080057799;FOXL1:0.098625227488;RUNX1..3:0.0773045146589;GCM1,2:0.0661331042407;SRF:0.0319814564497;ZBTB16:0.0116338608798;SNAI1..3:0.00316854583832;XCPE1{core}:-0.0100432188464;DMAP1_NCOR{1,2}_SMARC:-0.0150970792948;TLX1..3_NFIC{dimer}:-0.0172295645604;HSF1,2:-0.07700143145;IRF1,2:-0.0789160018659;PAX2:-0.0884621575381;OCT4_SOX2{dimer}:-0.129149747605;TFCP2:-0.162149753114;SOX{8,9,10}:-0.163950390544;T:-0.177413486665;NFE2L1:-0.181259290755;ESRRA:-0.181774411673;EVI1:-0.189574921108;LMO2:-0.221770160982;AIRE:-0.232533284012;bHLH_family:-0.257893219749;MTF1:-0.259070007996;PAX6:-0.259744290462;PITX1..3:-0.276102585019;NKX3-1:-0.298291002917;PPARG:-0.324222279759;FOXD3:-0.33466944164;NR5A1,2:-0.354258418424;FOXP1:-0.365346509539;PAX5:-0.380588623739;ZNF143:-0.391923794944;POU2F1..3:-0.39488124362;GFI1B:-0.404022196591;MYOD1:-0.418127381757;SP1:-0.430371566299;HIF1A:-0.444143040734;GLI1..3:-0.452516047828;IRF7:-0.464365074682;HOX{A5,B5}:-0.465224317199;ZEB1:-0.465350069965;ELK1,4_GABP{A,B1}:-0.480121784786;TP53:-0.484749570958;SOX17:-0.500036888788;PAX4:-0.504597497309;MEF2{A,B,C,D}:-0.505175167499;ATF5_CREB3:-0.512234472712;MYFfamily:-0.518367712889;IKZF2:-0.521571166433;NFKB1_REL_RELA:-0.526974577924;IKZF1:-0.534186459049;POU3F1..4:-0.540046147009;NR3C1:-0.543295934639;SMAD1..7,9:-0.580879421535;RBPJ:-0.581091580085;VSX1,2:-0.593737964433;AR:-0.596225976832;RREB1:-0.596969917554;ADNP_IRX_SIX_ZHX:-0.600927118436;TBX4,5:-0.601873494544;NRF1:-0.626067461444;TEAD1:-0.632345085423;HMGA1,2:-0.647524099131;SREBF1,2:-0.655900621216;PAX8:-0.673723739744;TGIF1:-0.687577165878;TFAP4:-0.688620219051;TAL1_TCF{3,4,12}:-0.69157076629;RXR{A,B,G}:-0.694579430074;FOX{I1,J2}:-0.707970468671;LEF1_TCF7_TCF7L1,2:-0.71489723379;SPZ1:-0.716178548009;NHLH1,2:-0.732176690153;PRRX1,2:-0.743456376013;UFEwm:-0.752847933125;FOS_FOS{B,L1}_JUN{B,D}:-0.752983343865;POU5F1:-0.783912691797;GTF2I:-0.789454775419;MAZ:-0.801798319725;ALX1:-0.80280967862;POU6F1:-0.810078395716;BREu{core}:-0.82456219466;BPTF:-0.829458071491;REST:-0.831310493125;PATZ1:-0.833951554502;HOX{A4,D4}:-0.836526832326;ATF4:-0.838036687376;AHR_ARNT_ARNT2:-0.850815873275;EGR1..3:-0.861385559702;RFX1:-0.862619901909;MAFB:-0.874179767168;EP300:-0.880388743361;NR1H4:-0.885403303541;HMX1:-0.902729548451;LHX3,4:-0.908833656444;MYBL2:-0.913290611217;STAT1,3:-0.938363883705;FOXQ1:-0.954289312933;ZBTB6:-0.956648223122;FOXP3:-0.979006621141;TOPORS:-0.982251042102;MZF1:-0.990121696429;ESR1:-1.02522028552;TFDP1:-1.03143950243;HES1:-1.04627159679;ZFP161:-1.07604947634;TEF:-1.07685567829;ZIC1..3:-1.09724157197;ATF6:-1.09893513969;CREB1:-1.10241123648;TFAP2{A,C}:-1.13865959644;MED-1{core}:-1.14242819606;FOXN1:-1.15471408649;NKX2-1,4:-1.1580530219;JUN:-1.16671376997;KLF4:-1.1691493597;RFX2..5_RFXANK_RFXAP:-1.20005182443;FOSL2:-1.20209734488;MTE{core}:-1.23638667801;ZNF238:-1.25579922156;SOX2:-1.25718710023;NKX6-1,2:-1.26670046116;ATF2:-1.31952549183;CRX:-1.33968433305;PRDM1:-1.37613583344;CDC5L:-1.38782279559;NKX2-3_NKX2-5:-1.38953028311;HIC1:-1.39235100564;GTF2A1,2:-1.41245155884;TFAP2B:-1.43724329691;SOX5:-1.4425703849;GATA4:-1.46542660561;NFATC1..3:-1.46616021666;HAND1,2:-1.56742136739;ZNF384:-1.71227167212;NANOG:-1.73512197615;HBP1_HMGB_SSRP1_UBTF:-1.83121458002
 
|top_motifs=GATA6:3.49120088196;FOX{F1,F2,J1}:2.79076593464;PAX1,9:2.62792505302;FOXA2:1.91008243719;FOX{D1,D2}:1.84961188374;HNF1A:1.7572703803;CEBPA,B_DDIT3:1.65000991264;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.47087380243;PBX1:1.2468324306;ZNF423:1.23902519824;NFIL3:1.23364368469;HNF4A_NR2F1,2:1.10308263342;HLF:1.09745239939;E2F1..5:1.07870245072;NFY{A,B,C}:1.07389430298;NKX2-2,8:1.00670021446;STAT5{A,B}:0.930356777715;NR6A1:0.879096427377;STAT2,4,6:0.847626720745;ONECUT1,2:0.812296708908;FOXM1:0.799571021054;CDX1,2,4:0.695283388652;TLX2:0.632759760634;CUX2:0.609743379819;NANOG{mouse}:0.586396942425;NFE2:0.575891992259;NFIX:0.569691034236;GFI1:0.564487447822;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.534820149972;NFE2L2:0.500927858577;HOXA9_MEIS1:0.46907676904;EN1,2:0.462982907102;FOXO1,3,4:0.461646979807;GZF1:0.444186232911;MYB:0.438115210739;TBP:0.429614222108;ARID5B:0.396398754194;EBF1:0.394471009057;SPIB:0.367026150914;RXRA_VDR{dimer}:0.342503404234;YY1:0.342225892372;ZNF148:0.323393837978;NKX3-2:0.279254674443;ELF1,2,4:0.273764688747;PDX1:0.272566234381;ETS1,2:0.259050440572;SPI1:0.226593232723;POU1F1:0.20933508622;BACH2:0.186722276414;ALX4:0.147467642342;RORA:0.104307213857;DBP:0.0991080057799;FOXL1:0.098625227488;RUNX1..3:0.0773045146589;GCM1,2:0.0661331042407;SRF:0.0319814564497;ZBTB16:0.0116338608798;SNAI1..3:0.00316854583832;XCPE1{core}:-0.0100432188464;DMAP1_NCOR{1,2}_SMARC:-0.0150970792948;TLX1..3_NFIC{dimer}:-0.0172295645604;HSF1,2:-0.07700143145;IRF1,2:-0.0789160018659;PAX2:-0.0884621575381;OCT4_SOX2{dimer}:-0.129149747605;TFCP2:-0.162149753114;SOX{8,9,10}:-0.163950390544;T:-0.177413486665;NFE2L1:-0.181259290755;ESRRA:-0.181774411673;EVI1:-0.189574921108;LMO2:-0.221770160982;AIRE:-0.232533284012;bHLH_family:-0.257893219749;MTF1:-0.259070007996;PAX6:-0.259744290462;PITX1..3:-0.276102585019;NKX3-1:-0.298291002917;PPARG:-0.324222279759;FOXD3:-0.33466944164;NR5A1,2:-0.354258418424;FOXP1:-0.365346509539;PAX5:-0.380588623739;ZNF143:-0.391923794944;POU2F1..3:-0.39488124362;GFI1B:-0.404022196591;MYOD1:-0.418127381757;SP1:-0.430371566299;HIF1A:-0.444143040734;GLI1..3:-0.452516047828;IRF7:-0.464365074682;HOX{A5,B5}:-0.465224317199;ZEB1:-0.465350069965;ELK1,4_GABP{A,B1}:-0.480121784786;TP53:-0.484749570958;SOX17:-0.500036888788;PAX4:-0.504597497309;MEF2{A,B,C,D}:-0.505175167499;ATF5_CREB3:-0.512234472712;MYFfamily:-0.518367712889;IKZF2:-0.521571166433;NFKB1_REL_RELA:-0.526974577924;IKZF1:-0.534186459049;POU3F1..4:-0.540046147009;NR3C1:-0.543295934639;SMAD1..7,9:-0.580879421535;RBPJ:-0.581091580085;VSX1,2:-0.593737964433;AR:-0.596225976832;RREB1:-0.596969917554;ADNP_IRX_SIX_ZHX:-0.600927118436;TBX4,5:-0.601873494544;NRF1:-0.626067461444;TEAD1:-0.632345085423;HMGA1,2:-0.647524099131;SREBF1,2:-0.655900621216;PAX8:-0.673723739744;TGIF1:-0.687577165878;TFAP4:-0.688620219051;TAL1_TCF{3,4,12}:-0.69157076629;RXR{A,B,G}:-0.694579430074;FOX{I1,J2}:-0.707970468671;LEF1_TCF7_TCF7L1,2:-0.71489723379;SPZ1:-0.716178548009;NHLH1,2:-0.732176690153;PRRX1,2:-0.743456376013;UFEwm:-0.752847933125;FOS_FOS{B,L1}_JUN{B,D}:-0.752983343865;POU5F1:-0.783912691797;GTF2I:-0.789454775419;MAZ:-0.801798319725;ALX1:-0.80280967862;POU6F1:-0.810078395716;BREu{core}:-0.82456219466;BPTF:-0.829458071491;REST:-0.831310493125;PATZ1:-0.833951554502;HOX{A4,D4}:-0.836526832326;ATF4:-0.838036687376;AHR_ARNT_ARNT2:-0.850815873275;EGR1..3:-0.861385559702;RFX1:-0.862619901909;MAFB:-0.874179767168;EP300:-0.880388743361;NR1H4:-0.885403303541;HMX1:-0.902729548451;LHX3,4:-0.908833656444;MYBL2:-0.913290611217;STAT1,3:-0.938363883705;FOXQ1:-0.954289312933;ZBTB6:-0.956648223122;FOXP3:-0.979006621141;TOPORS:-0.982251042102;MZF1:-0.990121696429;ESR1:-1.02522028552;TFDP1:-1.03143950243;HES1:-1.04627159679;ZFP161:-1.07604947634;TEF:-1.07685567829;ZIC1..3:-1.09724157197;ATF6:-1.09893513969;CREB1:-1.10241123648;TFAP2{A,C}:-1.13865959644;MED-1{core}:-1.14242819606;FOXN1:-1.15471408649;NKX2-1,4:-1.1580530219;JUN:-1.16671376997;KLF4:-1.1691493597;RFX2..5_RFXANK_RFXAP:-1.20005182443;FOSL2:-1.20209734488;MTE{core}:-1.23638667801;ZNF238:-1.25579922156;SOX2:-1.25718710023;NKX6-1,2:-1.26670046116;ATF2:-1.31952549183;CRX:-1.33968433305;PRDM1:-1.37613583344;CDC5L:-1.38782279559;NKX2-3_NKX2-5:-1.38953028311;HIC1:-1.39235100564;GTF2A1,2:-1.41245155884;TFAP2B:-1.43724329691;SOX5:-1.4425703849;GATA4:-1.46542660561;NFATC1..3:-1.46616021666;HAND1,2:-1.56742136739;ZNF384:-1.71227167212;NANOG:-1.73512197615;HBP1_HMGB_SSRP1_UBTF:-1.83121458002
 +
|xref=
 
}}
 
}}

Latest revision as of 13:37, 10 August 2017


Name:liver, embryo E17
Species:Mouse (Mus musculus)
Library ID:CNhs10510
Sample type:developmental
Genomic View: UCSC
MicroRNAs:Including candidate novel miRNAs(CAGE samples)
Excluding candidate novel miRNAs(CAGE samples)
CAGEd-oPOSSUM:link
Additional information
Sample information
strainC57BL/6J
tissueliver
dev stage17 days embryo
sexmixture
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

Accession numbers
MethodSample accession id
CAGE  SAMD00005008
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10510 CAGE DRX009020 DRR009894
Accession ID Mm9

Library idBAMCTSS
CNhs10510 DRZ001319 DRZ002702
Accession ID Mm10

Library idBAMCTSS
CNhs10510 DRZ012669 DRZ014052
Download raw sequence, BAM & CTSS
Mm9
FastaBAMCTSS
downloaddownloaddonwload
Mm10
BAMCTSS
downloaddonwload


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

CNhs10510

MCL coexpression id Coexpression dpi cluster scores median value
0 0
1 0
10 0
100 0
1000 0
1001 --0.0749
1002 --0.0557
1003 --0.123
1004 0
1005 0.333
1006 --0.0329
1007 --0.0786
1008 0
1009 --0.19
101 0.0346
1010 0
1011 --0.108
1012 0
1013 0.104
1014 0.0842
1015 --0.141
1016 --0.276
1017 0
1018 0
1019 0
102 0
1020 0
1021 0
1022 --0.0704
1023 0
1024 --0.041
1025 0.335
1026 0
1027 --0.048
1028 0
1029 --0.00408
103 --0.038
1030 0
1031 --0.0981
1032 --0.177
1033 0
1034 0.482
1035 0
1036 0.138
1037 0
1038 --0.2
1039 0.154
104 0
1040 --0.263
1041 0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs10510

Jaspar motif P-value
MA0002.2 0.00424
MA0003.1 0.156
MA0004.1 0.71
MA0006.1 0.281
MA0007.1 0.406
MA0009.1 0.322
MA0014.1 0.462
MA0017.1 8.5331e-13
MA0018.2 4.8606e-5
MA0019.1 0.387
MA0024.1 0.181
MA0025.1 0.736
MA0027.1 0.772
MA0028.1 0.67
MA0029.1 0.0533
MA0030.1 0.0439
MA0031.1 0.0367
MA0035.2 8.05326e-19
MA0038.1 0.387
MA0039.2 0.0212
MA0040.1 0.0763
MA0041.1 0.191
MA0042.1 0.661
MA0043.1 0.0456
MA0046.1 1.65324e-61
MA0047.2 7.49363e-8
MA0048.1 0.32
MA0050.1 0.486
MA0051.1 0.86
MA0052.1 0.00351
MA0055.1 0.365
MA0057.1 0.387
MA0058.1 0.598
MA0059.1 0.12
MA0060.1 0.116
MA0061.1 0.191
MA0062.2 0.528
MA0065.2 2.84427e-7
MA0066.1 0.0928
MA0067.1 0.182
MA0068.1 0.818
MA0069.1 0.102
MA0070.1 0.551
MA0071.1 0.0516
MA0072.1 0.0297
MA0073.1 0.72
MA0074.1 0.646
MA0076.1 0.895
MA0077.1 0.117
MA0078.1 0.475
MA0079.2 0.378
MA0080.2 6.13847e-5
MA0081.1 0.771
MA0083.1 0.694
MA0084.1 0.0999
MA0087.1 0.037
MA0088.1 0.128
MA0090.1 0.828
MA0091.1 0.592
MA0092.1 0.217
MA0093.1 0.738
MA0099.2 0.719
MA0100.1 0.604
MA0101.1 0.801
MA0102.2 0.00806
MA0103.1 0.383
MA0104.2 0.723
MA0105.1 0.00217
MA0106.1 0.613
MA0107.1 0.991
MA0108.2 0.842
MA0111.1 0.834
MA0112.2 8.50592e-4
MA0113.1 0.374
MA0114.1 1.09608e-10
MA0115.1 4.28077e-6
MA0116.1 0.00372
MA0117.1 0.836
MA0119.1 0.00787
MA0122.1 0.627
MA0124.1 0.666
MA0125.1 0.919
MA0131.1 0.938
MA0135.1 0.832
MA0136.1 0.00434
MA0137.2 0.5
MA0138.2 0.725
MA0139.1 0.154
MA0140.1 1.66283e-41
MA0141.1 0.00478
MA0142.1 0.163
MA0143.1 0.218
MA0144.1 0.535
MA0145.1 0.319
MA0146.1 0.0751
MA0147.1 0.608
MA0148.1 2.94482e-9
MA0149.1 0.0124
MA0150.1 0.004
MA0152.1 0.611
MA0153.1 5.13059e-48
MA0154.1 0.023
MA0155.1 0.745
MA0156.1 0.0699
MA0157.1 0.0503
MA0159.1 0.0181
MA0160.1 0.0146
MA0162.1 0.41
MA0163.1 1.69436e-4
MA0164.1 0.898
MA0258.1 0.0488
MA0259.1 0.979



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs10510

Novel motif P-value
1 0.0878
10 0.174
100 0.535
101 0.955
102 0.304
103 0.0113
104 0.926
105 0.711
106 0.0714
107 0.104
108 0.65
109 0.0222
11 0.0705
110 0.105
111 0.0506
112 0.022
113 0.93
114 0.161
115 0.812
116 0.737
117 0.0318
118 0.126
119 0.113
12 0.963
120 0.581
121 0.747
122 0.593
123 0.222
124 0.285
125 0.968
126 0.157
127 0.555
128 0.0571
129 0.573
13 6.01843e-4
130 0.305
131 0.0341
132 0.528
133 0.598
134 0.387
135 0.871
136 0.299
137 0.212
138 0.71
139 0.481
14 0.547
140 0.231
141 0.935
142 0.0806
143 0.385
144 0.923
145 0.0444
146 0.353
147 0.943
148 0.776
149 0.589
15 0.0725
150 0.255
151 0.317
152 0.293
153 0.648
154 0.695
155 0.558
156 0.0616
157 0.729
158 0.749
159 0.412
160 0.115
161 0.33
162 0.585
163 0.892
164 0.0145
165 0.347
166 0.799
167 0.482
168 0.19
169 0.0058
17 0.0968
18 0.658
19 0.0859
2 0.785
20 0.567
21 0.991
22 0.232
23 0.399
24 0.269
25 0.555
26 3.83887e-4
27 0.423
28 0.409
29 0.0509
3 0.0211
30 0.707
31 0.725
32 0.154
33 0.16
34 0.673
35 0.814
36 0.0385
37 0.107
38 0.486
39 0.614
4 0.649
40 0.0872
41 0.906
42 0.0817
43 0.0672
44 0.416
45 0.752
46 0.0958
47 0.154
48 0.133
49 0.0761
5 0.118
50 0.606
51 0.469
52 0.333
53 0.815
54 0.465
55 0.235
56 0.308
57 0.574
58 0.484
59 0.0957
6 0.85
60 0.121
61 0.32
62 0.0963
63 0.208
64 0.372
65 0.256
66 0.407
67 0.514
68 0.949
69 0.679
7 0.0621
70 0.201
71 0.0276
72 0.344
73 0.212
74 0.815
75 0.0482
76 0.918
77 0.467
78 0.0138
79 0.692
8 0.0136
80 0.0375
81 0.731
82 0.206
83 0.24
84 0.865
85 0.178
86 0.351
87 0.148
88 0.983
89 0.231
9 0.563
90 0.256
91 0.147
92 0.187
93 0.711
94 0.672
95 0.0879
96 0.117
97 0.762
98 0.229
99 0.291



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs10510


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002107 (liver)
0002100 (trunk)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000300 (mouse embryonic day 17 sample)
0011369 (mouse liver- embryo E17 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0004161 (septum transversum)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)