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{{f5samples
 
{{f5samples
 +
|DRA_sample_Accession=CAGE@DRS008877
 
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002107,UBERON:0002100,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423
 
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002107,UBERON:0002100,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423
 
|ancestors_in_cell_lineage_facet=
 
|ancestors_in_cell_lineage_facet=
Line 41: Line 42:
 
|is_a=EFO:0002091;;FF:0011379
 
|is_a=EFO:0002091;;FF:0011379
 
|is_obsolete=
 
|is_obsolete=
 +
|library_ids=CNhs10466
 
|name=liver, adult pregnant day01
 
|name=liver, adult pregnant day01
 
|namespace=FANTOM5
 
|namespace=FANTOM5
Line 83: Line 85:
 
|top_motifs=NFIL3:3.98244564927;FOX{F1,F2,J1}:3.64949768589;FOXA2:3.18278117291;HNF1A:2.94894347739;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.86443779447;NR1H4:2.79886754577;NFIX:2.74486162568;bHLH_family:2.69077046206;HLF:2.39627393411;CEBPA,B_DDIT3:2.28431649043;HNF4A_NR2F1,2:2.26709608673;ONECUT1,2:2.22238501355;STAT2,4,6:2.09657009494;FOX{D1,D2}:1.98283249832;FOXQ1:1.98219516538;ARID5B:1.96580963179;RBPJ:1.87053458876;AR:1.80185904953;NKX2-2,8:1.79920938556;NR6A1:1.59633916363;NR5A1,2:1.13661240585;STAT5{A,B}:1.13102791546;FOXM1:1.13041091713;GZF1:1.11109163362;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.04631940863;RORA:0.934634666173;TP53:0.885319652993;RXRA_VDR{dimer}:0.866301814355;IRF1,2:0.818228725671;RXR{A,B,G}:0.711744378261;NKX3-2:0.667067138958;CUX2:0.656169201428;ALX4:0.61743399848;STAT1,3:0.60439883638;IRF7:0.575226822178;NR3C1:0.551329175607;GCM1,2:0.546187248605;MYOD1:0.53304497163;ATF6:0.519221261992;FOXD3:0.510819389157;PAX1,9:0.440852153685;ESRRA:0.428468822814;NFE2:0.411738671346;FOXN1:0.394694837933;HAND1,2:0.391609076035;YY1:0.38906717451;VSX1,2:0.345222145469;TLX2:0.279318367217;LHX3,4:0.232129598531;T:0.227308621405;CDX1,2,4:0.212437866025;BPTF:0.203415364768;LEF1_TCF7_TCF7L1,2:0.180949463492;NFE2L1:0.173530538606;SNAI1..3:0.154812101107;TLX1..3_NFIC{dimer}:0.145787083699;ELK1,4_GABP{A,B1}:0.116348195906;TFAP4:0.0772835592672;ZEB1:0.0527099610249;MTF1:0.0442336585987;SP1:0.0412111805304;GATA6:0.00518410709066;PBX1:-0.033376101754;ZBTB6:-0.0337462449986;ELF1,2,4:-0.0407553356369;PDX1:-0.0745948732041;PAX8:-0.0755488846514;DMAP1_NCOR{1,2}_SMARC:-0.0926411386288;POU3F1..4:-0.121345196711;HOX{A4,D4}:-0.149782319667;ADNP_IRX_SIX_ZHX:-0.18292211108;PAX5:-0.191658648711;SPI1:-0.257235837829;BACH2:-0.257807102151;FOX{I1,J2}:-0.276405153678;CREB1:-0.285984555591;DBP:-0.293929018186;TBP:-0.29990792375;IKZF1:-0.326822879368;NFKB1_REL_RELA:-0.347308590956;ATF5_CREB3:-0.34736507552;ETS1,2:-0.360577598363;NHLH1,2:-0.366829539702;HMGA1,2:-0.366906582027;SOX5:-0.369758532536;NFE2L2:-0.37784060878;NKX2-3_NKX2-5:-0.386445080112;HIF1A:-0.394611859667;MYBL2:-0.396618657769;EBF1:-0.40346068505;SREBF1,2:-0.408054904463;MYFfamily:-0.422264235279;TEF:-0.432307725519;PITX1..3:-0.434264454436;FOXP1:-0.468717467678;SPIB:-0.490852320182;REST:-0.494133745026;NFY{A,B,C}:-0.526054847033;RUNX1..3:-0.56863403555;AHR_ARNT_ARNT2:-0.569247860652;NRF1:-0.598424897108;ZNF143:-0.604780963847;TEAD1:-0.620318376754;UFEwm:-0.635220121672;PAX2:-0.664524759602;SPZ1:-0.675998475352;GFI1B:-0.690363336596;EN1,2:-0.701197259132;MYB:-0.708632975898;TGIF1:-0.736418937206;MEF2{A,B,C,D}:-0.745452201616;TFCP2:-0.761186239035;EVI1:-0.763993304774;HIC1:-0.770007585213;GTF2A1,2:-0.772347003862;ESR1:-0.780599778672;PAX4:-0.803962091329;ZNF423:-0.814969067207;PRRX1,2:-0.821818348157;FOXO1,3,4:-0.83645165599;HOXA9_MEIS1:-0.851855996202;ZNF238:-0.852454740317;LMO2:-0.874468690202;PATZ1:-0.883579593318;MAFB:-0.888547330239;ZFP161:-0.891488379336;POU6F1:-0.911081069991;GTF2I:-0.918746366427;FOS_FOS{B,L1}_JUN{B,D}:-0.95078780866;MED-1{core}:-0.978929695319;HOX{A5,B5}:-1.00416299956;ATF4:-1.01737437856;OCT4_SOX2{dimer}:-1.02700695613;EGR1..3:-1.03119842463;TFAP2{A,C}:-1.03644590989;SMAD1..7,9:-1.03851736049;XCPE1{core}:-1.0800947856;SRF:-1.08293104943;RFX1:-1.10058336983;ZBTB16:-1.10449015552;TFAP2B:-1.13496432472;AIRE:-1.15184994368;ALX1:-1.15707711394;PPARG:-1.15876573994;TAL1_TCF{3,4,12}:-1.1894748139;IKZF2:-1.19584418266;MAZ:-1.20782825816;KLF4:-1.2166215442;MTE{core}:-1.22987121817;NFATC1..3:-1.23463734805;ZIC1..3:-1.25545099909;FOSL2:-1.26517146494;GATA4:-1.33716184442;PRDM1:-1.35623774301;PAX6:-1.36433316077;NKX2-1,4:-1.37085296264;JUN:-1.38548961998;SOX17:-1.39444055524;MZF1:-1.40952258617;E2F1..5:-1.45053750801;GFI1:-1.46044047043;HSF1,2:-1.49073220759;HMX1:-1.53158775469;RFX2..5_RFXANK_RFXAP:-1.54909726844;NANOG{mouse}:-1.56254579129;NANOG:-1.56667986271;BREu{core}:-1.57711917265;POU1F1:-1.58500330175;ATF2:-1.59702444388;TOPORS:-1.60337428376;GLI1..3:-1.7012809983;SOX{8,9,10}:-1.78182214965;CRX:-1.80097959485;SOX2:-1.82261326509;FOXL1:-1.82673087277;RREB1:-1.83355533457;TBX4,5:-1.93440832151;POU2F1..3:-1.93820207913;TFDP1:-2.04468244169;FOXP3:-2.06757837142;HES1:-2.08105931443;CDC5L:-2.15556695284;NKX3-1:-2.24810538133;HBP1_HMGB_SSRP1_UBTF:-2.3172573692;ZNF148:-2.33864818334;EP300:-2.38825414448;NKX6-1,2:-2.42497798185;POU5F1:-2.5847767962;ZNF384:-2.85982330737
 
|top_motifs=NFIL3:3.98244564927;FOX{F1,F2,J1}:3.64949768589;FOXA2:3.18278117291;HNF1A:2.94894347739;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.86443779447;NR1H4:2.79886754577;NFIX:2.74486162568;bHLH_family:2.69077046206;HLF:2.39627393411;CEBPA,B_DDIT3:2.28431649043;HNF4A_NR2F1,2:2.26709608673;ONECUT1,2:2.22238501355;STAT2,4,6:2.09657009494;FOX{D1,D2}:1.98283249832;FOXQ1:1.98219516538;ARID5B:1.96580963179;RBPJ:1.87053458876;AR:1.80185904953;NKX2-2,8:1.79920938556;NR6A1:1.59633916363;NR5A1,2:1.13661240585;STAT5{A,B}:1.13102791546;FOXM1:1.13041091713;GZF1:1.11109163362;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.04631940863;RORA:0.934634666173;TP53:0.885319652993;RXRA_VDR{dimer}:0.866301814355;IRF1,2:0.818228725671;RXR{A,B,G}:0.711744378261;NKX3-2:0.667067138958;CUX2:0.656169201428;ALX4:0.61743399848;STAT1,3:0.60439883638;IRF7:0.575226822178;NR3C1:0.551329175607;GCM1,2:0.546187248605;MYOD1:0.53304497163;ATF6:0.519221261992;FOXD3:0.510819389157;PAX1,9:0.440852153685;ESRRA:0.428468822814;NFE2:0.411738671346;FOXN1:0.394694837933;HAND1,2:0.391609076035;YY1:0.38906717451;VSX1,2:0.345222145469;TLX2:0.279318367217;LHX3,4:0.232129598531;T:0.227308621405;CDX1,2,4:0.212437866025;BPTF:0.203415364768;LEF1_TCF7_TCF7L1,2:0.180949463492;NFE2L1:0.173530538606;SNAI1..3:0.154812101107;TLX1..3_NFIC{dimer}:0.145787083699;ELK1,4_GABP{A,B1}:0.116348195906;TFAP4:0.0772835592672;ZEB1:0.0527099610249;MTF1:0.0442336585987;SP1:0.0412111805304;GATA6:0.00518410709066;PBX1:-0.033376101754;ZBTB6:-0.0337462449986;ELF1,2,4:-0.0407553356369;PDX1:-0.0745948732041;PAX8:-0.0755488846514;DMAP1_NCOR{1,2}_SMARC:-0.0926411386288;POU3F1..4:-0.121345196711;HOX{A4,D4}:-0.149782319667;ADNP_IRX_SIX_ZHX:-0.18292211108;PAX5:-0.191658648711;SPI1:-0.257235837829;BACH2:-0.257807102151;FOX{I1,J2}:-0.276405153678;CREB1:-0.285984555591;DBP:-0.293929018186;TBP:-0.29990792375;IKZF1:-0.326822879368;NFKB1_REL_RELA:-0.347308590956;ATF5_CREB3:-0.34736507552;ETS1,2:-0.360577598363;NHLH1,2:-0.366829539702;HMGA1,2:-0.366906582027;SOX5:-0.369758532536;NFE2L2:-0.37784060878;NKX2-3_NKX2-5:-0.386445080112;HIF1A:-0.394611859667;MYBL2:-0.396618657769;EBF1:-0.40346068505;SREBF1,2:-0.408054904463;MYFfamily:-0.422264235279;TEF:-0.432307725519;PITX1..3:-0.434264454436;FOXP1:-0.468717467678;SPIB:-0.490852320182;REST:-0.494133745026;NFY{A,B,C}:-0.526054847033;RUNX1..3:-0.56863403555;AHR_ARNT_ARNT2:-0.569247860652;NRF1:-0.598424897108;ZNF143:-0.604780963847;TEAD1:-0.620318376754;UFEwm:-0.635220121672;PAX2:-0.664524759602;SPZ1:-0.675998475352;GFI1B:-0.690363336596;EN1,2:-0.701197259132;MYB:-0.708632975898;TGIF1:-0.736418937206;MEF2{A,B,C,D}:-0.745452201616;TFCP2:-0.761186239035;EVI1:-0.763993304774;HIC1:-0.770007585213;GTF2A1,2:-0.772347003862;ESR1:-0.780599778672;PAX4:-0.803962091329;ZNF423:-0.814969067207;PRRX1,2:-0.821818348157;FOXO1,3,4:-0.83645165599;HOXA9_MEIS1:-0.851855996202;ZNF238:-0.852454740317;LMO2:-0.874468690202;PATZ1:-0.883579593318;MAFB:-0.888547330239;ZFP161:-0.891488379336;POU6F1:-0.911081069991;GTF2I:-0.918746366427;FOS_FOS{B,L1}_JUN{B,D}:-0.95078780866;MED-1{core}:-0.978929695319;HOX{A5,B5}:-1.00416299956;ATF4:-1.01737437856;OCT4_SOX2{dimer}:-1.02700695613;EGR1..3:-1.03119842463;TFAP2{A,C}:-1.03644590989;SMAD1..7,9:-1.03851736049;XCPE1{core}:-1.0800947856;SRF:-1.08293104943;RFX1:-1.10058336983;ZBTB16:-1.10449015552;TFAP2B:-1.13496432472;AIRE:-1.15184994368;ALX1:-1.15707711394;PPARG:-1.15876573994;TAL1_TCF{3,4,12}:-1.1894748139;IKZF2:-1.19584418266;MAZ:-1.20782825816;KLF4:-1.2166215442;MTE{core}:-1.22987121817;NFATC1..3:-1.23463734805;ZIC1..3:-1.25545099909;FOSL2:-1.26517146494;GATA4:-1.33716184442;PRDM1:-1.35623774301;PAX6:-1.36433316077;NKX2-1,4:-1.37085296264;JUN:-1.38548961998;SOX17:-1.39444055524;MZF1:-1.40952258617;E2F1..5:-1.45053750801;GFI1:-1.46044047043;HSF1,2:-1.49073220759;HMX1:-1.53158775469;RFX2..5_RFXANK_RFXAP:-1.54909726844;NANOG{mouse}:-1.56254579129;NANOG:-1.56667986271;BREu{core}:-1.57711917265;POU1F1:-1.58500330175;ATF2:-1.59702444388;TOPORS:-1.60337428376;GLI1..3:-1.7012809983;SOX{8,9,10}:-1.78182214965;CRX:-1.80097959485;SOX2:-1.82261326509;FOXL1:-1.82673087277;RREB1:-1.83355533457;TBX4,5:-1.93440832151;POU2F1..3:-1.93820207913;TFDP1:-2.04468244169;FOXP3:-2.06757837142;HES1:-2.08105931443;CDC5L:-2.15556695284;NKX3-1:-2.24810538133;HBP1_HMGB_SSRP1_UBTF:-2.3172573692;ZNF148:-2.33864818334;EP300:-2.38825414448;NKX6-1,2:-2.42497798185;POU5F1:-2.5847767962;ZNF384:-2.85982330737
 
|xref=
 
|xref=
 +
}} {{DRAAccessionNumbers
 +
|DRA_sample_Accession=CAGE@DRS008877
 +
|accession_numbers=DRX009014;DRR009888;DRZ001313;DRZ002696;CAGE
 +
|library_id=CNhs10466
 
}}
 
}}

Revision as of 08:55, 16 October 2013


Name:liver, adult pregnant day01
Species:Mouse (Mus musculus)
Library ID:{{{library_id}}}
Sample type:developmental
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainC57BL/6J
tissueliver
dev stage1 day pregnant adult
sexmixture
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

Accession numbers
MethodSample accession id
CAGE  DRS008877
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{library_id}}} {{{accession_numbers}}}
Accession ID Mm9

Library idBAMCTSS
{{{library_id}}}
Download raw sequence, BAM & CTSS
Mm9
BAMCTSS
[{{{mm9bam}}} download][{{{mm9ctss}}} donwload]
Mm10
BAMCTSS
[{{{mm10bam}}} download][{{{mm10ctss}}} donwload]


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

CNhs10466

MCL coexpression id Coexpression dpi cluster scores median value
0 0
1 0
10 0
100 0
1000 0.0773
1001 0.03
1002 --0.116
1003 0.112
1004 0
1005 0
1006 --0.143
1007 --0.228
1008 0
1009 0.00269
101 0.0309
1010 0
1011 --0.224
1012 0
1013 0.466
1014 --0.0874
1015 --0.382
1016 --0.318
1017 0
1018 0
1019 0
102 0
1020 0
1021 0
1022 0.736
1023 0
1024 0
1025 0.437
1026 0
1027 --0.048
1028 0
1029 --0.0989
103 --0.0848
1030 0
1031 --0.417
1032 --0.397
1033 0.0463
1034 0.816
1035 0
1036 --0.183
1037 0
1038 --0.14
1039 0.803
104 0
1040 --0.19
1041 0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs10466

Jaspar motif P-value
MA0002.2 0.216
MA0003.1 0.4
MA0004.1 0.427
MA0006.1 0.273
MA0007.1 0.0722
MA0009.1 0.983
MA0014.1 0.114
MA0017.1 4.99121e-23
MA0018.2 2.1753e-4
MA0019.1 0.596
MA0024.1 3.16662e-4
MA0025.1 0.0011
MA0027.1 0.883
MA0028.1 0.318
MA0029.1 0.235
MA0030.1 0.00618
MA0031.1 0.00221
MA0035.2 0.0457
MA0038.1 0.465
MA0039.2 0.26
MA0040.1 0.291
MA0041.1 0.864
MA0042.1 0.945
MA0043.1 0.315
MA0046.1 1.74228e-96
MA0047.2 3.20453e-7
MA0048.1 0.261
MA0050.1 0.00108
MA0051.1 9.61359e-4
MA0052.1 0.0109
MA0055.1 0.226
MA0057.1 0.459
MA0058.1 0.298
MA0059.1 0.0546
MA0060.1 2.36029e-5
MA0061.1 0.611
MA0062.2 0.44
MA0065.2 3.90538e-15
MA0066.1 0.0629
MA0067.1 0.155
MA0068.1 0.462
MA0069.1 0.307
MA0070.1 0.462
MA0071.1 9.60444e-5
MA0072.1 1.49741e-4
MA0073.1 0.832
MA0074.1 0.226
MA0076.1 0.716
MA0077.1 0.0602
MA0078.1 0.847
MA0079.2 0.375
MA0080.2 0.894
MA0081.1 0.857
MA0083.1 0.00162
MA0084.1 0.488
MA0087.1 0.376
MA0088.1 0.205
MA0090.1 0.707
MA0091.1 0.798
MA0092.1 0.118
MA0093.1 0.446
MA0099.2 0.63
MA0100.1 0.314
MA0101.1 0.96
MA0102.2 0.304
MA0103.1 0.115
MA0104.2 0.548
MA0105.1 0.203
MA0106.1 0.125
MA0107.1 0.703
MA0108.2 0.00302
MA0111.1 0.606
MA0112.2 6.71493e-6
MA0113.1 0.315
MA0114.1 4.44663e-22
MA0115.1 4.69992e-10
MA0116.1 0.153
MA0117.1 0.644
MA0119.1 0.0192
MA0122.1 0.586
MA0124.1 0.578
MA0125.1 0.369
MA0131.1 0.898
MA0135.1 0.772
MA0136.1 0.873
MA0137.2 0.00754
MA0138.2 0.361
MA0139.1 0.208
MA0140.1 0.686
MA0141.1 3.72461e-6
MA0142.1 0.242
MA0143.1 0.296
MA0144.1 0.112
MA0145.1 0.0383
MA0146.1 0.103
MA0147.1 0.437
MA0148.1 1.36926e-10
MA0149.1 0.00917
MA0150.1 0.00614
MA0152.1 0.984
MA0153.1 4.37719e-65
MA0154.1 0.144
MA0155.1 0.941
MA0156.1 0.923
MA0157.1 0.00151
MA0159.1 3.47374e-4
MA0160.1 9.14822e-5
MA0162.1 0.433
MA0163.1 0.0116
MA0164.1 0.774
MA0258.1 0.00145
MA0259.1 0.836



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs10466

Novel motif P-value
1 0.0869
10 0.213
100 0.498
101 0.642
102 0.216
103 0.0127
104 0.807
105 0.646
106 0.0966
107 0.156
108 0.741
109 0.0295
11 0.0472
110 0.0732
111 0.0338
112 0.0155
113 0.996
114 0.00434
115 0.365
116 0.843
117 0.0722
118 0.435
119 0.0606
12 0.478
120 0.696
121 0.517
122 0.358
123 0.418
124 0.484
125 0.339
126 0.261
127 0.774
128 0.0349
129 0.652
13 9.49059e-5
130 0.74
131 0.475
132 0.498
133 0.743
134 0.718
135 0.369
136 0.441
137 0.802
138 0.499
139 0.341
14 0.461
140 0.0487
141 0.532
142 0.265
143 0.869
144 0.491
145 0.0639
146 0.42
147 0.408
148 0.661
149 0.0909
15 0.138
150 0.218
151 0.445
152 0.0648
153 0.423
154 0.958
155 0.439
156 0.101
157 0.745
158 0.567
159 0.375
160 0.336
161 0.88
162 0.615
163 0.211
164 0.0336
165 0.566
166 0.276
167 0.264
168 0.952
169 0.00228
17 0.0635
18 0.871
19 0.0473
2 0.736
20 0.522
21 0.573
22 0.123
23 0.256
24 0.148
25 0.554
26 0.00637
27 0.698
28 0.462
29 0.197
3 0.0638
30 0.777
31 0.405
32 0.178
33 0.313
34 0.854
35 0.46
36 0.0718
37 0.0652
38 0.254
39 0.317
4 0.934
40 0.103
41 0.933
42 0.358
43 0.0808
44 0.0591
45 0.652
46 0.155
47 0.328
48 0.102
49 0.0417
5 0.184
50 0.666
51 0.308
52 0.452
53 0.671
54 0.331
55 0.659
56 0.457
57 0.902
58 0.243
59 0.316
6 0.786
60 0.146
61 0.169
62 0.0729
63 0.0842
64 0.432
65 0.158
66 0.514
67 0.93
68 0.184
69 0.899
7 0.194
70 0.0152
71 0.0443
72 0.65
73 0.0484
74 0.591
75 0.0173
76 0.871
77 0.416
78 0.0295
79 0.947
8 0.00709
80 0.543
81 0.559
82 0.0201
83 0.306
84 0.274
85 0.0449
86 0.0893
87 0.135
88 0.826
89 0.0544
9 0.774
90 0.149
91 0.652
92 0.25
93 0.115
94 0.822
95 0.205
96 0.308
97 0.232
98 0.334
99 0.0826



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs10466


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002107 (liver)
0002100 (trunk)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0000317 (mouse pregnant tissue sample)
0000318 (mouse pregnant day 1 sample)
0011379 (mouse liver- adult pregnant day01 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0004161 (septum transversum)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)

{{{1}}} Accession numbers
MethodSample accession id
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Library accession numbers

Library idMethodExp. accession idRun accession id
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Accession ID

Library idBAMCTSS
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