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FF:59-29C1

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Name:submandibular gland, adult
Species:Mouse (Mus musculus)
Library ID:CNhs10469
Sample type:developmental
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainC57BL/6J
tissuesubmandibular gland
dev stageadult
sexmale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

Accession numbers
MethodSample accession id
CAGE  DRS008963
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10469 CAGE DRX009100 DRR009974
Accession ID Mm9

Library idBAMCTSS
CNhs10469 DRZ001399 DRZ002782
Download raw sequence, BAM & CTSS
Mm9
BAMCTSS
[{{{mm9bam}}} download][{{{mm9ctss}}} donwload]
Mm10
BAMCTSS
[{{{mm10bam}}} download][{{{mm10ctss}}} donwload]


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

CNhs10469

MCL coexpression id Coexpression dpi cluster scores median value
0 0
1 0
10 0
100 0
1000 0
1001 0
1002 --0.0663
1003 0.173
1004 0
1005 0.171
1006 0
1007 --0.0396
1008 0
1009 --0.0572
101 --0.0707
1010 0
1011 0.12
1012 0
1013 0.556
1014 --0.0874
1015 --0.196
1016 --0.255
1017 0
1018 0
1019 0
102 0
1020 0
1021 0
1022 0.731
1023 0
1024 --0.0899
1025 0
1026 0
1027 --0.048
1028 0
1029 0.027
103 --0.0787
1030 0
1031 --0.417
1032 0.167
1033 --0.0752
1034 0.728
1035 0
1036 --0.233
1037 0.457
1038 --0.0619
1039 0.194
104 0
1040 --0.0865
1041 0.21



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs10469

Jaspar motif P-value
MA0002.2 0.143
MA0003.1 0.135
MA0004.1 0.419
MA0006.1 0.351
MA0007.1 0.166
MA0009.1 0.0675
MA0014.1 0.195
MA0017.1 0.891
MA0018.2 0.0522
MA0019.1 9.21722e-4
MA0024.1 4.93387e-5
MA0025.1 0.489
MA0027.1 0.211
MA0028.1 0.57
MA0029.1 0.36
MA0030.1 0.598
MA0031.1 0.765
MA0035.2 0.0109
MA0038.1 0.533
MA0039.2 0.009
MA0040.1 0.682
MA0041.1 0.187
MA0042.1 0.661
MA0043.1 0.0123
MA0046.1 9.6203e-8
MA0047.2 0.326
MA0048.1 0.541
MA0050.1 0.00101
MA0051.1 0.172
MA0052.1 0.176
MA0055.1 0.899
MA0057.1 0.165
MA0058.1 0.544
MA0059.1 0.262
MA0060.1 1.48918e-5
MA0061.1 0.779
MA0062.2 0.406
MA0065.2 0.0582
MA0066.1 0.973
MA0067.1 0.19
MA0068.1 0.263
MA0069.1 0.854
MA0070.1 0.686
MA0071.1 0.574
MA0072.1 0.346
MA0073.1 0.559
MA0074.1 0.743
MA0076.1 0.434
MA0077.1 0.507
MA0078.1 0.438
MA0079.2 0.224
MA0080.2 2.55551e-7
MA0081.1 0.405
MA0083.1 0.18
MA0084.1 0.188
MA0087.1 0.665
MA0088.1 0.622
MA0090.1 0.768
MA0091.1 0.58
MA0092.1 0.312
MA0093.1 0.428
MA0099.2 0.673
MA0100.1 0.227
MA0101.1 0.878
MA0102.2 0.0556
MA0103.1 1.408e-6
MA0104.2 0.802
MA0105.1 0.238
MA0106.1 0.245
MA0107.1 0.926
MA0108.2 0.00492
MA0111.1 0.717
MA0112.2 2.33173e-5
MA0113.1 0.162
MA0114.1 0.809
MA0115.1 0.654
MA0116.1 0.665
MA0117.1 0.352
MA0119.1 0.457
MA0122.1 0.582
MA0124.1 0.259
MA0125.1 0.0961
MA0131.1 0.435
MA0135.1 0.953
MA0136.1 3.80647e-5
MA0137.2 0.717
MA0138.2 0.292
MA0139.1 0.694
MA0140.1 0.145
MA0141.1 3.27938e-4
MA0142.1 0.112
MA0143.1 0.077
MA0144.1 0.6
MA0145.1 4.39821e-4
MA0146.1 0.65
MA0147.1 0.791
MA0148.1 0.099
MA0149.1 0.743
MA0150.1 0.341
MA0152.1 0.433
MA0153.1 8.85292e-6
MA0154.1 0.0192
MA0155.1 0.371
MA0156.1 2.01714e-4
MA0157.1 0.394
MA0159.1 0.0196
MA0160.1 0.0239
MA0162.1 0.692
MA0163.1 0.692
MA0164.1 0.761
MA0258.1 0.0106
MA0259.1 0.837



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs10469

Novel motif P-value
1 0.11
10 0.117
100 0.955
101 0.176
102 0.495
103 0.0257
104 0.496
105 0.31
106 0.017
107 0.123
108 0.946
109 0.408
11 0.462
110 0.393
111 0.0234
112 0.155
113 0.308
114 0.358
115 0.53
116 0.143
117 0.461
118 0.691
119 0.0711
12 0.689
120 0.693
121 0.59
122 0.167
123 0.242
124 0.342
125 0.0956
126 0.285
127 0.087
128 0.0597
129 0.147
13 0.00151
130 0.478
131 0.525
132 0.551
133 0.112
134 0.504
135 0.879
136 0.357
137 0.864
138 0.307
139 0.334
14 0.544
140 0.0729
141 0.117
142 0.409
143 0.276
144 0.528
145 0.224
146 0.579
147 0.845
148 0.918
149 0.813
15 0.332
150 0.132
151 0.126
152 0.0862
153 0.588
154 0.784
155 0.292
156 1.44495e-12
157 0.382
158 0.388
159 0.143
160 0.298
161 0.999
162 0.334
163 0.611
164 0.39
165 0.633
166 0.71
167 0.726
168 0.171
169 0.0508
17 0.0806
18 0.9
19 0.16
2 0.673
20 0.749
21 0.815
22 0.377
23 0.232
24 0.0744
25 0.618
26 0.0057
27 0.522
28 0.631
29 0.839
3 0.497
30 0.357
31 0.723
32 0.724
33 0.636
34 0.913
35 0.479
36 0.572
37 0.0701
38 0.489
39 0.445
4 0.671
40 0.727
41 0.529
42 0.301
43 0.215
44 0.835
45 0.401
46 0.119
47 0.335
48 0.293
49 0.163
5 0.186
50 0.634
51 0.773
52 0.198
53 0.737
54 0.74
55 0.319
56 0.487
57 0.714
58 0.137
59 0.154
6 0.574
60 0.136
61 0.209
62 0.182
63 0.0747
64 0.972
65 0.233
66 0.636
67 0.735
68 0.432
69 0.665
7 0.144
70 0.00698
71 0.076
72 0.488
73 0.0829
74 0.945
75 0.244
76 0.414
77 0.371
78 0.226
79 0.691
8 0.826
80 0.69
81 0.987
82 0.205
83 0.683
84 0.25
85 0.00761
86 0.242
87 0.616
88 0.37
89 0.0492
9 0.547
90 0.527
91 0.413
92 0.726
93 0.0509
94 0.693
95 0.559
96 0.373
97 0.538
98 0.209
99 0.502



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs10469


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001044 (saliva-secreting gland)
0001736 (submandibular gland)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000161 (orifice)
0001444 (subdivision of head)
0002553 (anatomical cavity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003293 (gland of oral region)
0003294 (gland of foregut)
0001829 (major salivary gland)
0002365 (exocrine gland)
0000464 (anatomical space)
0002530 (gland)
0010047 (oral gland)
0003408 (gland of gut)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0001041 (foregut)
0000166 (oral opening)
0000167 (oral cavity)
0002330 (exocrine system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011388 (mouse submandibular gland- adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006595 (presumptive endoderm)
UBERON:0006298 (submandibular gland primordium)
UBERON:0010316 (germ layer / neural crest)