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FF:749-24G1

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Name:heart, neonate N10
Species:Mouse (Mus musculus)
Library ID:{{{library_id}}}
Sample type:{{{sample_category}}}
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainC57BL/6J
tissueheart
dev stage10 days neonate
sexmixture
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA
Download raw sequence, BAM & CTSS
Mm9
BAMCTSS
[{{{mm9bam}}} download][{{{mm9ctss}}} donwload]
Mm10
BAMCTSS
[{{{mm10bam}}} download][{{{mm10ctss}}} donwload]


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

CNhs11118

MCL coexpression id Coexpression dpi cluster scores median value
0 0
1 0
10 0.735
100 0
1000 0.637
1001 0.707
1002 0.223
1003 0.175
1004 0
1005 --0.0389
1006 0.538
1007 0.037
1008 0
1009 0.204
101 --0.0447
1010 0
1011 --0.0394
1012 0.066
1013 --0.0781
1014 0.126
1015 --0.0787
1016 0.0997
1017 0
1018 0
1019 0
102 0
1020 0
1021 --0.0487
1022 0.832
1023 0
1024 0.388
1025 0
1026 0
1027 0.066
1028 0
1029 0.377
103 0.228
1030 0
1031 0.14
1032 0.134
1033 --0.0752
1034 0
1035 0.666
1036 --0.166
1037 0
1038 0.144
1039 0.339
104 0
1040 0.117
1041 0.066



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data
no result for this sample


TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11118

Jaspar motif P-value
MA0002.2 0.115
MA0003.1 0.665
MA0004.1 0.0824
MA0006.1 0.203
MA0007.1 0.616
MA0009.1 0.607
MA0014.1 0.717
MA0017.1 0.834
MA0018.2 0.00703
MA0019.1 0.507
MA0024.1 0.0285
MA0025.1 0.385
MA0027.1 0.356
MA0028.1 0.0709
MA0029.1 0.942
MA0030.1 0.216
MA0031.1 0.255
MA0035.2 0.176
MA0038.1 0.777
MA0039.2 0.122
MA0040.1 0.16
MA0041.1 0.276
MA0042.1 0.489
MA0043.1 0.0221
MA0046.1 1.6527e-16
MA0047.2 0.21
MA0048.1 0.432
MA0050.1 0.14
MA0051.1 0.194
MA0052.1 1.16072e-27
MA0055.1 0.225
MA0057.1 0.632
MA0058.1 0.0463
MA0059.1 0.363
MA0060.1 8.40571e-11
MA0061.1 0.933
MA0062.2 4.63144e-6
MA0065.2 0.146
MA0066.1 0.388
MA0067.1 0.277
MA0068.1 0.363
MA0069.1 0.193
MA0070.1 0.65
MA0071.1 0.0512
MA0072.1 0.829
MA0073.1 0.966
MA0074.1 0.151
MA0076.1 0.0022
MA0077.1 0.674
MA0078.1 0.811
MA0079.2 0.209
MA0080.2 0.00175
MA0081.1 0.772
MA0083.1 5.76585e-10
MA0084.1 0.565
MA0087.1 0.816
MA0088.1 0.717
MA0090.1 0.00198
MA0091.1 0.438
MA0092.1 0.428
MA0093.1 0.0591
MA0099.2 0.00198
MA0100.1 0.0416
MA0101.1 0.429
MA0102.2 0.0134
MA0103.1 0.00117
MA0104.2 0.041
MA0105.1 0.168
MA0106.1 0.091
MA0107.1 0.729
MA0108.2 0.242
MA0111.1 0.973
MA0112.2 1.29909e-6
MA0113.1 0.725
MA0114.1 0.53
MA0115.1 0.449
MA0116.1 0.413
MA0117.1 0.97
MA0119.1 0.0655
MA0122.1 0.203
MA0124.1 0.841
MA0125.1 0.307
MA0131.1 0.449
MA0135.1 0.0266
MA0136.1 7.92015e-5
MA0137.2 0.0336
MA0138.2 0.387
MA0139.1 0.574
MA0140.1 0.162
MA0141.1 2.41132e-9
MA0142.1 0.243
MA0143.1 0.546
MA0144.1 0.701
MA0145.1 0.226
MA0146.1 0.215
MA0147.1 0.117
MA0148.1 0.498
MA0149.1 0.753
MA0150.1 0.861
MA0152.1 0.0574
MA0153.1 4.77662e-11
MA0154.1 0.0119
MA0155.1 0.243
MA0156.1 1.19203e-5
MA0157.1 0.699
MA0159.1 6.06737e-5
MA0160.1 2.47769e-4
MA0162.1 0.0688
MA0163.1 0.0474
MA0164.1 0.326
MA0258.1 0.0022
MA0259.1 0.641



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11118

Novel motif P-value
1 0.0422
10 0.285
100 0.558
101 0.714
102 0.938
103 0.532
104 0.852
105 0.162
106 0.114
107 0.0833
108 0.966
109 0.286
11 0.315
110 0.0881
111 0.109
112 0.996
113 0.703
114 0.239
115 0.99
116 0.818
117 0.571
118 0.602
119 0.268
12 0.66
120 0.308
121 0.519
122 0.466
123 0.69
124 0.713
125 0.693
126 0.385
127 0.166
128 0.612
129 0.227
13 3.16967e-4
130 0.442
131 0.379
132 0.89
133 0.231
134 0.616
135 0.923
136 0.029
137 0.273
138 0.074
139 0.0908
14 0.328
140 0.182
141 0.836
142 0.577
143 0.641
144 0.239
145 0.274
146 0.68
147 0.696
148 0.252
149 0.0669
15 0.672
150 0.252
151 0.505
152 0.276
153 0.268
154 0.298
155 0.149
156 6.31452e-13
157 0.684
158 0.09
159 0.0199
160 0.111
161 0.98
162 0.707
163 0.46
164 0.355
165 0.0195
166 0.335
167 0.585
168 0.489
169 4.31902e-5
17 0.238
18 0.261
19 0.015
2 0.859
20 0.924
21 0.551
22 0.0897
23 0.879
24 0.7
25 0.853
26 0.019
27 0.602
28 0.765
29 0.942
3 0.185
30 0.19
31 0.496
32 0.687
33 0.612
34 0.309
35 0.751
36 0.224
37 0.0117
38 0.843
39 0.406
4 0.331
40 0.0856
41 0.807
42 0.762
43 0.136
44 0.95
45 0.836
46 0.411
47 0.475
48 0.374
49 0.104
5 0.108
50 0.725
51 0.536
52 0.434
53 0.985
54 0.652
55 0.311
56 0.538
57 0.182
58 0.413
59 0.0584
6 0.161
60 0.195
61 0.562
62 0.431
63 0.165
64 0.857
65 0.935
66 0.146
67 0.705
68 0.823
69 0.248
7 0.0684
70 0.872
71 0.0457
72 0.399
73 0.124
74 0.341
75 0.706
76 0.497
77 0.422
78 0.0562
79 0.886
8 0.416
80 0.0589
81 0.969
82 0.173
83 0.668
84 0.81
85 0.0256
86 0.861
87 7.75832e-6
88 0.54
89 0.0804
9 0.112
90 0.489
91 0.143
92 0.207
93 0.665
94 0.309
95 0.433
96 0.333
97 0.318
98 0.563
99 0.741



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs11118


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000305 (mouse neonate N10 sample)
0011414 (mouse heart- neonate N10 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

NA