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FF:782-15G1

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Name:heart, neonate N16
Species:Mouse (Mus musculus)
Library ID:CNhs11209
Sample type:developmental
Genomic View: UCSC
MicroRNAs:Including candidate novel miRNAs(CAGE samples)
Excluding candidate novel miRNAs(CAGE samples)
CAGEd-oPOSSUM:link
Additional information
Sample information
strainC57BL/6J
tissueheart
dev stage16 days neonate
sexmixture
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

Accession numbers
MethodSample accession id
CAGE  SAMD00006014
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11209 CAGE DRX008982 DRR009856
Accession ID Mm9

Library idBAMCTSS
CNhs11209 DRZ001281 DRZ002664
Accession ID Mm10

Library idBAMCTSS
CNhs11209 DRZ012631 DRZ014014
Download raw sequence, BAM & CTSS
Mm9
FastaBAMCTSS
downloaddownloaddonwload
Mm10
BAMCTSS
downloaddonwload


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

CNhs11209

MCL coexpression id Coexpression dpi cluster scores median value
0 0
1 0
10 0.797
100 0
1000 0.652
1001 0.751
1002 0.0945
1003 0.129
1004 0
1005 0
1006 0.575
1007 0.0114
1008 0
1009 0.242
101 --0.104
1010 0
1011 0
1012 0.0945
1013 --0.0701
1014 0
1015 --0.133
1016 0.159
1017 0
1018 0
1019 0
102 0
1020 0
1021 0
1022 0.95
1023 0
1024 0.586
1025 0
1026 0.0653
1027 0.00517
1028 0.0339
1029 0.0695
103 0.0653
1030 0
1031 0.147
1032 0.0761
1033 --0.00996
1034 0
1035 0.419
1036 --0.383
1037 0
1038 0.297
1039 0.509
104 0
1040 0.252
1041 0.0653



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11209

Jaspar motif P-value
MA0002.2 0.0814
MA0003.1 0.437
MA0004.1 0.0221
MA0006.1 0.121
MA0007.1 0.861
MA0009.1 0.792
MA0014.1 0.587
MA0017.1 0.526
MA0018.2 0.231
MA0019.1 0.167
MA0024.1 1.72232e-5
MA0025.1 0.201
MA0027.1 0.813
MA0028.1 0.00237
MA0029.1 0.857
MA0030.1 0.88
MA0031.1 0.594
MA0035.2 2.47125e-5
MA0038.1 0.336
MA0039.2 0.929
MA0040.1 0.441
MA0041.1 0.596
MA0042.1 0.678
MA0043.1 0.569
MA0046.1 1.08999e-17
MA0047.2 0.839
MA0048.1 0.568
MA0050.1 0.497
MA0051.1 0.585
MA0052.1 1.97195e-60
MA0055.1 0.421
MA0057.1 0.855
MA0058.1 0.007
MA0059.1 0.00269
MA0060.1 1.89579e-10
MA0061.1 0.336
MA0062.2 3.68804e-7
MA0065.2 0.0901
MA0066.1 0.982
MA0067.1 0.592
MA0068.1 0.738
MA0069.1 0.305
MA0070.1 0.465
MA0071.1 0.00142
MA0072.1 0.603
MA0073.1 0.746
MA0074.1 0.136
MA0076.1 4.07035e-4
MA0077.1 0.446
MA0078.1 0.989
MA0079.2 0.0397
MA0080.2 0.00299
MA0081.1 0.725
MA0083.1 6.50686e-14
MA0084.1 0.74
MA0087.1 0.286
MA0088.1 0.212
MA0090.1 6.10271e-5
MA0091.1 0.882
MA0092.1 0.355
MA0093.1 0.0185
MA0099.2 0.0259
MA0100.1 0.0324
MA0101.1 0.509
MA0102.2 0.049
MA0103.1 1.87865e-4
MA0104.2 0.00333
MA0105.1 0.0998
MA0106.1 0.424
MA0107.1 0.83
MA0108.2 0.807
MA0111.1 0.982
MA0112.2 0.00101
MA0113.1 0.12
MA0114.1 0.184
MA0115.1 0.284
MA0116.1 0.0176
MA0117.1 0.805
MA0119.1 0.157
MA0122.1 0.0451
MA0124.1 0.638
MA0125.1 0.492
MA0131.1 0.387
MA0135.1 0.594
MA0136.1 7.78767e-5
MA0137.2 0.187
MA0138.2 0.0307
MA0139.1 0.61
MA0140.1 0.00475
MA0141.1 2.67834e-10
MA0142.1 0.0887
MA0143.1 0.424
MA0144.1 0.606
MA0145.1 0.0783
MA0146.1 0.0309
MA0147.1 0.00349
MA0148.1 0.851
MA0149.1 0.763
MA0150.1 0.177
MA0152.1 0.396
MA0153.1 6.04034e-12
MA0154.1 0.126
MA0155.1 0.339
MA0156.1 0.00201
MA0157.1 0.278
MA0159.1 3.02891e-5
MA0160.1 2.93141e-6
MA0162.1 0.247
MA0163.1 0.243
MA0164.1 0.124
MA0258.1 0.0089
MA0259.1 0.134



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11209

Novel motif P-value
1 0.272
10 0.32
100 0.781
101 0.498
102 0.91
103 0.825
104 0.662
105 0.0688
106 0.266
107 0.128
108 0.93
109 0.654
11 0.695
110 0.329
111 0.129
112 0.752
113 0.973
114 0.146
115 0.883
116 0.516
117 0.345
118 0.756
119 0.259
12 0.649
120 0.0701
121 0.108
122 0.556
123 0.52
124 0.33
125 0.752
126 0.555
127 0.297
128 0.818
129 0.154
13 0.00252
130 0.405
131 0.924
132 0.842
133 0.513
134 0.493
135 0.95
136 0.739
137 0.191
138 0.118
139 0.242
14 0.105
140 0.546
141 0.876
142 0.862
143 0.332
144 0.378
145 0.586
146 0.425
147 0.659
148 0.486
149 0.00177
15 0.433
150 0.535
151 0.373
152 0.0604
153 0.779
154 0.967
155 0.0197
156 0.269
157 0.771
158 0.0571
159 0.0471
160 0.321
161 0.546
162 0.715
163 0.126
164 0.721
165 0.00264
166 0.245
167 0.742
168 0.152
169 5.20431e-4
17 0.306
18 0.0509
19 0.0297
2 0.263
20 0.733
21 0.174
22 0.0312
23 0.538
24 0.922
25 0.924
26 0.199
27 0.798
28 0.921
29 0.113
3 0.685
30 0.624
31 0.627
32 0.7
33 0.986
34 0.158
35 0.573
36 0.117
37 0.0288
38 0.763
39 0.462
4 0.414
40 0.104
41 0.699
42 0.699
43 0.246
44 0.58
45 0.354
46 0.987
47 0.706
48 0.711
49 0.242
5 0.274
50 0.81
51 0.653
52 0.27
53 0.557
54 0.4
55 0.69
56 0.79
57 0.71
58 0.546
59 0.0638
6 0.0507
60 0.14
61 0.839
62 0.682
63 0.131
64 0.967
65 0.827
66 0.12
67 0.436
68 0.553
69 0.079
7 0.131
70 0.856
71 0.455
72 0.323
73 0.0565
74 0.698
75 0.462
76 0.805
77 0.326
78 0.0427
79 0.503
8 0.745
80 0.31
81 0.943
82 0.328
83 0.547
84 0.159
85 0.00756
86 0.813
87 0.0548
88 0.482
89 0.0789
9 0.0878
90 0.679
91 0.395
92 0.302
93 0.505
94 0.927
95 0.283
96 0.785
97 0.947
98 0.524
99 0.803



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs11209


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000306 (mouse neonate N16 sample)
0011424 (mouse heart- neonate N16 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0004872 (splanchnic layer of lateral plate mesoderm)
UBERON:0004140 (primary heart field)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)