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FF:92-27E5

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Name:uterus, adult
Species:Mouse (Mus musculus)
Library ID:CNhs10509
Sample type:developmental
Genomic View: UCSC
MicroRNAs:Including candidate novel miRNAs(CAGE samples)
Excluding candidate novel miRNAs(CAGE samples)
CAGEd-oPOSSUM:link
Additional information
Sample information
strainC57BL/6J
tissueuterus
dev stageadult
sexfemale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

Accession numbers
MethodSample accession id
CAGE  SAMD00004798
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10509 CAGE DRX009129 DRR010003
Accession ID Mm9

Library idBAMCTSS
CNhs10509 DRZ001428 DRZ002811
Accession ID Mm10

Library idBAMCTSS
CNhs10509 DRZ012778 DRZ014161
Download raw sequence, BAM & CTSS
Mm9
FastaBAMCTSS
downloaddownloaddonwload
Mm10
BAMCTSS
downloaddonwload


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

CNhs10509

MCL coexpression id Coexpression dpi cluster scores median value
0 0
1 0
10 0
100 0
1000 0.0564
1001 0.147
1002 --0.0624
1003 0.197
1004 0.737
1005 0.137
1006 0
1007 0.041
1008 0
1009 0.328
101 0.0583
1010 0
1011 0
1012 0
1013 0.0847
1014 --0.0874
1015 --0.0662
1016 0.038
1017 0
1018 0.19
1019 0
102 0
1020 0
1021 --0.0487
1022 0.0583
1023 0
1024 0.0847
1025 0.0294
1026 0.0436
1027 --0.0163
1028 0.073
1029 0.247
103 0.269
1030 0
1031 0.425
1032 --0.103
1033 0
1034 0.073
1035 0
1036 0.00733
1037 0
1038 0.0237
1039 --0.11
104 0
1040 0.108
1041 0.136



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs10509

Jaspar motif P-value
MA0002.2 0.234
MA0003.1 0.0525
MA0004.1 0.645
MA0006.1 0.0633
MA0007.1 0.494
MA0009.1 0.219
MA0014.1 0.898
MA0017.1 0.00572
MA0018.2 0.0301
MA0019.1 0.275
MA0024.1 3.88638e-4
MA0025.1 0.585
MA0027.1 0.109
MA0028.1 0.0317
MA0029.1 0.127
MA0030.1 0.234
MA0031.1 0.118
MA0035.2 2.18553e-4
MA0038.1 0.802
MA0039.2 0.0103
MA0040.1 0.561
MA0041.1 0.36
MA0042.1 0.429
MA0043.1 0.0297
MA0046.1 0.72
MA0047.2 0.344
MA0048.1 0.699
MA0050.1 2.59579e-15
MA0051.1 7.4444e-9
MA0052.1 0.476
MA0055.1 0.318
MA0057.1 0.645
MA0058.1 0.544
MA0059.1 0.134
MA0060.1 1.35348e-8
MA0061.1 0.0661
MA0062.2 0.11
MA0065.2 0.136
MA0066.1 0.116
MA0067.1 0.566
MA0068.1 0.779
MA0069.1 0.314
MA0070.1 0.614
MA0071.1 0.13
MA0072.1 0.919
MA0073.1 0.792
MA0074.1 0.674
MA0076.1 0.0305
MA0077.1 0.532
MA0078.1 0.0383
MA0079.2 0.0197
MA0080.2 1.87407e-6
MA0081.1 0.66
MA0083.1 3.30071e-4
MA0084.1 0.267
MA0087.1 0.293
MA0088.1 0.638
MA0090.1 0.0994
MA0091.1 0.128
MA0092.1 0.914
MA0093.1 0.657
MA0099.2 1.44974e-9
MA0100.1 0.15
MA0101.1 0.00784
MA0102.2 0.816
MA0103.1 0.18
MA0104.2 0.0431
MA0105.1 0.724
MA0106.1 0.584
MA0107.1 8.21536e-4
MA0108.2 0.811
MA0111.1 0.493
MA0112.2 0.0191
MA0113.1 0.975
MA0114.1 0.00115
MA0115.1 0.00109
MA0116.1 0.588
MA0117.1 0.462
MA0119.1 0.312
MA0122.1 0.712
MA0124.1 0.917
MA0125.1 0.00982
MA0131.1 0.17
MA0135.1 0.573
MA0136.1 1.09973e-4
MA0137.2 0.00138
MA0138.2 0.714
MA0139.1 0.566
MA0140.1 5.53801e-4
MA0141.1 2.97999e-5
MA0142.1 0.345
MA0143.1 0.251
MA0144.1 4.86885e-4
MA0145.1 0.00313
MA0146.1 0.802
MA0147.1 0.0272
MA0148.1 0.542
MA0149.1 0.175
MA0150.1 0.381
MA0152.1 0.128
MA0153.1 0.0599
MA0154.1 0.304
MA0155.1 0.8
MA0156.1 1.24072e-5
MA0157.1 0.0274
MA0159.1 0.176
MA0160.1 0.0146
MA0162.1 0.53
MA0163.1 0.681
MA0164.1 0.457
MA0258.1 0.265
MA0259.1 0.0962



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs10509

Novel motif P-value
1 0.399
10 0.184
100 0.0372
101 0.73
102 0.364
103 0.712
104 0.163
105 0.391
106 0.00157
107 0.0181
108 0.619
109 0.334
11 0.309
110 0.718
111 0.52
112 0.222
113 0.524
114 0.258
115 0.634
116 0.939
117 0.00702
118 0.0505
119 0.612
12 0.98
120 0.258
121 0.221
122 0.737
123 0.222
124 0.692
125 0.447
126 0.355
127 0.139
128 0.0611
129 0.291
13 0.107
130 0.0639
131 0.605
132 0.842
133 0.31
134 0.419
135 0.895
136 0.458
137 0.12
138 0.0665
139 0.729
14 0.715
140 0.0538
141 0.984
142 0.441
143 0.373
144 0.936
145 0.356
146 0.273
147 0.0865
148 0.171
149 0.139
15 0.283
150 0.524
151 0.909
152 0.0192
153 0.341
154 0.798
155 0.484
156 3.97782e-4
157 0.727
158 0.623
159 0.166
160 0.434
161 0.564
162 0.87
163 0.963
164 0.911
165 0.961
166 0.00112
167 0.201
168 0.382
169 0.0261
17 0.386
18 0.0797
19 0.00676
2 0.00759
20 0.203
21 0.497
22 0.194
23 0.373
24 0.175
25 0.281
26 0.0688
27 0.347
28 0.751
29 0.406
3 0.855
30 0.178
31 0.805
32 0.589
33 0.614
34 0.769
35 0.0648
36 0.0404
37 0.385
38 0.731
39 0.467
4 0.903
40 0.445
41 0.175
42 0.807
43 0.764
44 0.26
45 0.0867
46 0.459
47 0.867
48 0.671
49 0.923
5 0.704
50 0.264
51 0.867
52 0.0686
53 0.102
54 0.962
55 0.757
56 0.969
57 0.179
58 0.817
59 0.393
6 0.303
60 0.184
61 0.22
62 0.622
63 0.493
64 0.303
65 0.96
66 0.292
67 0.718
68 0.862
69 0.243
7 0.945
70 0.939
71 0.541
72 0.623
73 0.297
74 0.462
75 0.317
76 0.0928
77 0.608
78 0.391
79 0.733
8 0.0707
80 0.0608
81 0.936
82 0.696
83 0.958
84 0.742
85 0.491
86 0.641
87 0.562
88 0.834
89 0.537
9 0.24
90 0.0461
91 0.459
92 0.383
93 0.274
94 0.398
95 0.436
96 0.0467
97 0.464
98 0.884
99 0.32



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs10509


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000995 (uterus)
0003134 (female reproductive organ)
0000479 (tissue)
0005156 (reproductive structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011440 (mouse uterus- adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005795 (embryonic uterus)
UBERON:0010316 (germ layer / neural crest)