FFCP PHASE1:Hg19::chr12:54913159..54913160,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:54913159..54913160,+ | |||
|description=CAGE_peak_at_chr12:54913159..54913160,+ | |description=CAGE_peak_at_chr12:54913159..54913160,+ | ||
|id=chr12:54913159..54913160,+ | |id=chr12:54913159..54913160,+ | ||
|ontology_enrichment_celltype=CL:0000540!4.96e-11!6;CL:0000031!4.96e-11!6;CL:0000404!4.96e-11!6;CL:0000197!5.93e-11!6;CL:0000098!5.93e-11!6;CL:0002167!5.93e-11!6;CL:0002057!4.06e-10!42;CL:0000860!2.80e-09!45;CL:0000047!2.86e-08!8;CL:0000839!4.42e-07!70;CL:0000557!6.08e-07!71 | |ontology_enrichment_celltype=CL:0000540!4.96e-11!6;CL:0000031!4.96e-11!6;CL:0000404!4.96e-11!6;CL:0000197!5.93e-11!6;CL:0000098!5.93e-11!6;CL:0002167!5.93e-11!6;CL:0002057!4.06e-10!42;CL:0000860!2.80e-09!45;CL:0000047!2.86e-08!8;CL:0000839!4.42e-07!70;CL:0000557!6.08e-07!71 | ||
|ontology_enrichment_celltype_v019=CL:0000540;2.27e-19;6!CL:0000404;2.27e-19;6!CL:0000197;3.62e-19;6!CL:0000098;3.62e-19;6!CL:0002167;3.62e-19;6 | |ontology_enrichment_celltype_v019=CL:0000540;2.27e-19;6!CL:0000404;2.27e-19;6!CL:0000197;3.62e-19;6!CL:0000098;3.62e-19;6!CL:0002167;3.62e-19;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.07e-19,6;CL:0000031,2.07e-19,6;CL:0000404,2.07e-19,6;CL:0000197,4.95e-19,6;CL:0000098,4.95e-19,6;CL:0002167,4.95e-19,6;CL:0000047,1.01e-14,8;CL:0000133,5.39e-07,59 | |||
|ontology_enrichment_development_v019=CL:0000031;2.27e-19;6 | |ontology_enrichment_development_v019=CL:0000031;2.27e-19;6 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0000349;4.90e-11;5!UBERON:0002619;6.03e-09;22!UBERON:0003528;4.29e-08;34!UBERON:0002020;4.29e-08;34!UBERON:0000956;6.16e-08;25!UBERON:0000203;6.16e-08;25!UBERON:0001954;1.02e-07;2!UBERON:0003022;1.02e-07;2!UBERON:0002421;1.02e-07;2!UBERON:0002600;1.02e-07;2!UBERON:0001876;1.64e-07;2!UBERON:0002148;1.64e-07;2!UBERON:0006331;1.64e-07;2!UBERON:0009662;1.64e-07;2 | |ontology_enrichment_uberon_v019=UBERON:0000349;4.90e-11;5!UBERON:0002619;6.03e-09;22!UBERON:0003528;4.29e-08;34!UBERON:0002020;4.29e-08;34!UBERON:0000956;6.16e-08;25!UBERON:0000203;6.16e-08;25!UBERON:0001954;1.02e-07;2!UBERON:0003022;1.02e-07;2!UBERON:0002421;1.02e-07;2!UBERON:0002600;1.02e-07;2!UBERON:0001876;1.64e-07;2!UBERON:0002148;1.64e-07;2!UBERON:0006331;1.64e-07;2!UBERON:0009662;1.64e-07;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.37e-11,81;UBERON:0000349,3.54e-11,5;UBERON:0001016,5.32e-10,89;UBERON:0002619,4.74e-09,22;UBERON:0003528,6.73e-09,34;UBERON:0002020,6.73e-09,34;UBERON:0000956,4.99e-08,25;UBERON:0000203,4.99e-08,25;UBERON:0000073,5.11e-08,53;UBERON:0002616,5.11e-08,53;UBERON:0001954,9.87e-08,2;UBERON:0003022,9.87e-08,2;UBERON:0002421,9.87e-08,2;UBERON:0002600,9.87e-08,2;UBERON:0001876,1.12e-07,2;UBERON:0001049,1.41e-07,56;UBERON:0005068,1.41e-07,56;UBERON:0006241,1.41e-07,56;UBERON:0007135,1.41e-07,56;UBERON:0002148,2.40e-07,2;UBERON:0006331,2.40e-07,2;UBERON:0009662,2.40e-07,2 | |||
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| ||
|short_description=p@chr12:54913159..54913160,+ | |short_description=p@chr12:54913159..54913160,+ | ||
}} | }} |
Latest revision as of 10:05, 24 July 2015
Short description: | p@chr12:54913159..54913160, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:54913159..54913160, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.07e-19 | 6 |
neuroblast | 2.07e-19 | 6 |
electrically signaling cell | 2.07e-19 | 6 |
receptor cell | 4.95e-19 | 6 |
sensory epithelial cell | 4.95e-19 | 6 |
olfactory epithelial cell | 4.95e-19 | 6 |
neuronal stem cell | 1.01e-14 | 8 |
neurectodermal cell | 5.39e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.37e-11 | 81 |
limbic system | 3.54e-11 | 5 |
nervous system | 5.32e-10 | 89 |
regional part of cerebral cortex | 4.74e-09 | 22 |
brain grey matter | 6.73e-09 | 34 |
gray matter | 6.73e-09 | 34 |
cerebral cortex | 4.99e-08 | 25 |
pallium | 4.99e-08 | 25 |
regional part of nervous system | 5.11e-08 | 53 |
regional part of brain | 5.11e-08 | 53 |
Ammon's horn | 9.87e-08 | 2 |
lobe parts of cerebral cortex | 9.87e-08 | 2 |
hippocampal formation | 9.87e-08 | 2 |
limbic lobe | 9.87e-08 | 2 |
amygdala | 1.12e-07 | 2 |
neural tube | 1.41e-07 | 56 |
neural rod | 1.41e-07 | 56 |
future spinal cord | 1.41e-07 | 56 |
neural keel | 1.41e-07 | 56 |
locus ceruleus | 2.40e-07 | 2 |
brainstem nucleus | 2.40e-07 | 2 |
hindbrain nucleus | 2.40e-07 | 2 |