FFCP PHASE1:Hg19::chr6:86159253..86159279,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding|HGNC=NA|TSSclassifier=S|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr6:86159253..86159279,-|id=chr6:86159253..86159279,-|ontology_enrichment_celltype=CL:0000055!1.20e-26!180;CL:0000057!2.01e-19!75;CL:0002620!1.64e-14!23;CL:0002371!4.99e-12!591;CL:0000144!1.94e-11!625;CL:0000548!2.49e-10!679;CL:0000004!2.49e-10!679;CL:0000255!2.49e-10!679;CL:0000012!5.95e-10!682;CL:0000680!2.52e-08!57;CL:0000056!2.52e-08!57;CL:0000355!2.52e-08!57;CL:0000359!6.23e-08!32;CL:0000183!3.26e-07!59;CL:0000003!3.85e-07!722;CL:0000187!5.03e-07!54;CL:0000192!8.22e-07!42;CL:0000514!8.22e-07!42|ontology_enrichment_celltype_v019=CL:0000359;2.11e-11;32!CL:0002556;1.49e-09;6!CL:0002620;3.99e-09;23!CL:0002594;5.25e-09;4!CL:0000499;1.34e-08;28!CL:0000135;7.41e-08;3!CL:0000388;7.41e-08;3!CL:0000192;7.68e-08;43!CL:0002552;2.21e-07;5!CL:0002595;4.22e-07;5!CL:0000057;4.33e-07;73|ontology_enrichment_celltype_v019_2=CL:0000057,4.80e-18,76;CL:0000359,5.14e-12,32;CL:0000048,7.20e-11,427;CL:0000723,1.81e-10,433;CL:0000192,2.43e-10,43;CL:0000514,2.43e-10,43;CL:0000034,5.96e-10,441;CL:0002556,1.44e-09,6;CL:0002594,2.37e-09,4;CL:0002620,3.35e-09,23;CL:0000499,1.29e-08,28;CL:0000680,1.49e-08,58;CL:0000056,1.49e-08,58;CL:0000355,1.49e-08,58;CL:0000135,9.38e-08,3;CL:0000388,9.38e-08,3;CL:0002552,1.52e-07,5;CL:0000187,3.47e-07,55;CL:0002595,4.41e-07,5|ontology_enrichment_development_v019=CL:0000514;7.68e-08;43|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:0060072;7.38e-10;4!DOID:0060084;1.19e-07;3!DOID:127;1.19e-07;3|ontology_enrichment_disease_v019_2=DOID:0060072,5.35e-10,4;DOID:0060084,8.57e-08,3;DOID:127,8.57e-08,3|ontology_enrichment_uberon=UBERON:0000914!3.06e-14!83;UBERON:0002329!3.06e-14!83;UBERON:0003077!3.06e-14!83;UBERON:0003059!3.06e-14!83;UBERON:0007282!3.06e-14!83;UBERON:0009618!3.06e-14!83;UBERON:0007285!3.06e-14!83;UBERON:0003102!1.96e-13!95;UBERON:0000486!3.60e-11!82;UBERON:0002199!1.37e-10!45;UBERON:0002416!1.37e-10!45;UBERON:0004290!4.32e-10!70;UBERON:0002097!5.33e-10!40;UBERON:0005256!1.72e-07!143;UBERON:0001134!1.81e-07!61;UBERON:0002036!1.81e-07!61;UBERON:0003082!1.81e-07!61;UBERON:0002385!2.30e-07!63;UBERON:0001015!2.30e-07!63;UBERON:0000383!2.30e-07!63;UBERON:0000475!2.53e-07!365|ontology_enrichment_uberon_v019=UBERON:0001758;1.49e-09;6!UBERON:0003672;1.49e-09;6!UBERON:0001310;5.25e-09;4!UBERON:0004573;3.17e-08;33!UBERON:0004571;3.17e-08;33!UBERON:0003129;4.07e-08;7!UBERON:0007846;7.41e-08;3!UBERON:0000043;7.41e-08;3!UBERON:0007845;7.41e-08;3!UBERON:0001637;3.13e-07;42!UBERON:0003509;3.13e-07;42!UBERON:0004572;3.13e-07;42!UBERON:0003834;4.22e-07;5!UBERON:0001533;4.22e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0001637,2.73e-11,42;UBERON:0003509,2.73e-11,42;UBERON:0004572,2.73e-11,42;UBERON:0002329,2.90e-11,71;UBERON:0003059,2.90e-11,71;UBERON:0007282,2.90e-11,71;UBERON:0004290,2.90e-11,71;UBERON:0009618,2.90e-11,71;UBERON:0003077,5.08e-11,72;UBERON:0007285,5.08e-11,72;UBERON:0007524,8.75e-11,73;UBERON:0000486,1.09e-10,83;UBERON:0003102,5.99e-10,99;UBERON:0007503,1.07e-09,78;UBERON:0002199,1.28e-09,46;UBERON:0002416,1.28e-09,46;UBERON:0001758,1.44e-09,6;UBERON:0003672,1.44e-09,6;UBERON:0001310,2.37e-09,4;UBERON:0004573,1.11e-08,33;UBERON:0004571,1.11e-08,33;UBERON:0002097,1.66e-08,41;UBERON:0003129,3.95e-08,7;UBERON:0007846,9.38e-08,3;UBERON:0000043,9.38e-08,3;UBERON:0007845,9.38e-08,3;UBERON:0001134,1.05e-07,62;UBERON:0002036,1.05e-07,62;UBERON:0003082,1.05e-07,62;UBERON:0002385,2.51e-07,64;UBERON:0001015,2.51e-07,64;UBERON:0000383,2.51e-07,64;UBERON:0003834,4.41e-07,5;UBERON:0001533,4.41e-07,5;UBERON:0007500,8.16e-07,59;UBERON:0001981,8.16e-07,59;UBERON:0004537,8.16e-07,59;UBERON:0006965,8.16e-07,59|phase1_expression=0.181678379270557,0.214100523890983,0,0,0,0,0,0,0.522371256399677,0.737201809504527,0,0.655324116390517,0.527533956456907,0.247532705920093,0,1.34465029290355,0,0,0,0.861847406537515,0.816002764977012,0.626909442956176,0,0,0.125542639594803,0.687720651731561,0.492603536699674,0.550975469195755,0,0,0,0,0.6024118375565,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0.289648807765598,0,0,0,1.0843174571537,2.00535164254356,0.289693037921647,1.5905718941022,0,0.850813354476611,1.10864698731282,0.263504357079378,0.130979075497713,0.728590576585084,0.370784442784429,0,0,0,0,0,0,0,1.72046919021225,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0.25326102332916,11.2547803691236,2.29469296599051,0.709336764396714,0,0,0,0,0.134710672069688,0,0.605429710579726,0,0.234321431833797,0.936480230490962,0.570471821544449,1.79338416662161,1.40921398372518,1.94247533241758,4.3539750077697,1.22492502752936,2.8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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |||
|TSSclassifier=S | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr6:86159253..86159279,- | |||
|id=chr6:86159253..86159279,- | |||
|ontology_enrichment_celltype=CL:0000055!1.20e-26!180;CL:0000057!2.01e-19!75;CL:0002620!1.64e-14!23;CL:0002371!4.99e-12!591;CL:0000144!1.94e-11!625;CL:0000548!2.49e-10!679;CL:0000004!2.49e-10!679;CL:0000255!2.49e-10!679;CL:0000012!5.95e-10!682;CL:0000680!2.52e-08!57;CL:0000056!2.52e-08!57;CL:0000355!2.52e-08!57;CL:0000359!6.23e-08!32;CL:0000183!3.26e-07!59;CL:0000003!3.85e-07!722;CL:0000187!5.03e-07!54;CL:0000192!8.22e-07!42;CL:0000514!8.22e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0000359;2.11e-11;32!CL:0002556;1.49e-09;6!CL:0002620;3.99e-09;23!CL:0002594;5.25e-09;4!CL:0000499;1.34e-08;28!CL:0000135;7.41e-08;3!CL:0000388;7.41e-08;3!CL:0000192;7.68e-08;43!CL:0002552;2.21e-07;5!CL:0002595;4.22e-07;5!CL:0000057;4.33e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.80e-18,76;CL:0000359,5.14e-12,32;CL:0000048,7.20e-11,427;CL:0000723,1.81e-10,433;CL:0000192,2.43e-10,43;CL:0000514,2.43e-10,43;CL:0000034,5.96e-10,441;CL:0002556,1.44e-09,6;CL:0002594,2.37e-09,4;CL:0002620,3.35e-09,23;CL:0000499,1.29e-08,28;CL:0000680,1.49e-08,58;CL:0000056,1.49e-08,58;CL:0000355,1.49e-08,58;CL:0000135,9.38e-08,3;CL:0000388,9.38e-08,3;CL:0002552,1.52e-07,5;CL:0000187,3.47e-07,55;CL:0002595,4.41e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000514;7.68e-08;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060072;7.38e-10;4!DOID:0060084;1.19e-07;3!DOID:127;1.19e-07;3 | |||
|ontology_enrichment_disease_v019_2=DOID:0060072,5.35e-10,4;DOID:0060084,8.57e-08,3;DOID:127,8.57e-08,3 | |||
|ontology_enrichment_uberon=UBERON:0000914!3.06e-14!83;UBERON:0002329!3.06e-14!83;UBERON:0003077!3.06e-14!83;UBERON:0003059!3.06e-14!83;UBERON:0007282!3.06e-14!83;UBERON:0009618!3.06e-14!83;UBERON:0007285!3.06e-14!83;UBERON:0003102!1.96e-13!95;UBERON:0000486!3.60e-11!82;UBERON:0002199!1.37e-10!45;UBERON:0002416!1.37e-10!45;UBERON:0004290!4.32e-10!70;UBERON:0002097!5.33e-10!40;UBERON:0005256!1.72e-07!143;UBERON:0001134!1.81e-07!61;UBERON:0002036!1.81e-07!61;UBERON:0003082!1.81e-07!61;UBERON:0002385!2.30e-07!63;UBERON:0001015!2.30e-07!63;UBERON:0000383!2.30e-07!63;UBERON:0000475!2.53e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0001758;1.49e-09;6!UBERON:0003672;1.49e-09;6!UBERON:0001310;5.25e-09;4!UBERON:0004573;3.17e-08;33!UBERON:0004571;3.17e-08;33!UBERON:0003129;4.07e-08;7!UBERON:0007846;7.41e-08;3!UBERON:0000043;7.41e-08;3!UBERON:0007845;7.41e-08;3!UBERON:0001637;3.13e-07;42!UBERON:0003509;3.13e-07;42!UBERON:0004572;3.13e-07;42!UBERON:0003834;4.22e-07;5!UBERON:0001533;4.22e-07;5 | |||
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| |||
|short_description=p@chr6:86159253..86159279,- | |||
}} |
Revision as of 22:01, 13 September 2013
Short description: | p@chr6:86159253..86159279, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr6:86159253..86159279, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.80e-18 | 76 |
vascular associated smooth muscle cell | 5.14e-12 | 32 |
multi fate stem cell | 7.20e-11 | 427 |
somatic stem cell | 1.81e-10 | 433 |
smooth muscle cell | 2.43e-10 | 43 |
smooth muscle myoblast | 2.43e-10 | 43 |
stem cell | 5.96e-10 | 441 |
fibroblast of periodontium | 1.44e-09 | 6 |
smooth muscle cell of the umbilical artery | 2.37e-09 | 4 |
skin fibroblast | 3.35e-09 | 23 |
stromal cell | 1.29e-08 | 28 |
muscle precursor cell | 1.49e-08 | 58 |
myoblast | 1.49e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.49e-08 | 58 |
fibrocyte | 9.38e-08 | 3 |
tendon cell | 9.38e-08 | 3 |
fibroblast of gingiva | 1.52e-07 | 5 |
muscle cell | 3.47e-07 | 55 |
smooth muscle cell of the subclavian artery | 4.41e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
benign neoplasm | 5.35e-10 | 4 |
cell type benign neoplasm | 8.57e-08 | 3 |
leiomyoma | 8.57e-08 | 3 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.