MCL coexpression mm9:1035

Phase1 CAGE Peaks

	Short description
Mm9::chr10:62991132..62991135,+	p@chr10:62991132..62991135 +
Mm9::chr10:63321598..63321602,+	p@chr10:63321598..63321602 +
Mm9::chr10:63480516..63480520,+	p@chr10:63480516..63480520 +
Mm9::chr10:63553671..63553676,+	p@chr10:63553671..63553676 +
Mm9::chr10:63777271..63777275,+	p@chr10:63777271..63777275 +
Mm9::chr12:55963956..55963984,+	p1@uc007nny.1
Mm9::chr2:30851191..30851242,+	p3@Usp20

Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

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GO ID	GO name	FDR corrected p-value
GO:0004221	ubiquitin thiolesterase activity	0.0229606092149236
GO:0004843	ubiquitin-specific protease activity	0.0229606092149236
GO:0019783	small conjugating protein-specific protease activity	0.0229606092149236
GO:0004197	cysteine-type endopeptidase activity	0.0229606092149236
GO:0016790	thiolester hydrolase activity	0.0229606092149236
GO:0006511	ubiquitin-dependent protein catabolic process	0.0229606092149236
GO:0043632	modification-dependent macromolecule catabolic process	0.0229606092149236
GO:0019941	modification-dependent protein catabolic process	0.0229606092149236
GO:0051603	proteolysis involved in cellular protein catabolic process	0.0229606092149236
GO:0044257	cellular protein catabolic process	0.0229606092149236
GO:0008234	cysteine-type peptidase activity	0.0253109077959788
GO:0030163	protein catabolic process	0.0263655289541445
GO:0044265	cellular macromolecule catabolic process	0.0298307127595464
GO:0043285	biopolymer catabolic process	0.0298307127595464
GO:0009057	macromolecule catabolic process	0.0351942146496466
GO:0044248	cellular catabolic process	0.0438923282017568
GO:0004175	endopeptidase activity	0.0438923282017568
GO:0006512	ubiquitin cycle	0.0438923282017568

Relative expression of the co-expression cluster over median <br>Analyst:

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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

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Cell Type

Ontology term	p-value	n

Uber Anatomy

Ontology term	p-value	n

Disease

Ontology term	p-value	n

TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

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Novel motifs

JASPAR motifs

Motifs	-log10(p-value)
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