Template:EntrezGene: Difference between revisions
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<tr><th scope="row" align="right">transcription factor:</th><td>[[transcription_factor::{{{transcription_factor}}}]]</td></tr> | <tr><th scope="row" align="right">transcription factor:</th><td>[[transcription_factor::{{{transcription_factor}}}]]</td></tr> | ||
</table> | </table> | ||
== ENCODE TF ChIP-seq peak enrichment analysis == | |||
{{#info: Method: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <nowiki><=</nowiki> 0.05) after Benjamini-Hochberg correction were retained. <br>Analyst: Erick Arner}} | |||
{{#ifexpr: {{#ask:[[tf_chipseq_enrich_entregeneid::{{{GeneID}}}]]|format=count}} > 0 | | |||
<html> | |||
<script type="text/javascript"> | |||
$(document).ready(function() { | |||
$('#tf_chipseq_enrich').dataTable({ | |||
"sScrollY": "300px", | |||
"bPaginate": false, | |||
"bScrollCollapse": true, | |||
"iDisplayLength": -1, | |||
"aaSorting": [[2,'desc']], | |||
"aoColumnDefs": [{ "sWidth": "150px", "sType": "numeric", "aTargets": [3] },{ "sWidth": "150px", "sType": "numeric", "aTargets": [4] }] | |||
}); | |||
}); | |||
</script> | |||
</html> | |||
{{#ask:[[tf_chipseq_enrich_entregeneid::{{{GeneID}}}]]|?Tf_chipseq_enrich_values|intro=<table id="tf_chipseq_enrich"><html><thead></html><tr><th>Coexpression cluster</th><th>#promoters</th><th>Enrichment</th><th>p-value</th><th>q-value</th></tr><html></thead><tbody></html>|outro=<html></tbody></html></table>|link=none|format=template|template=Tf_chipseq_enrichlist_in_entregene|searchlabel=}} | |||
|No analysis results for this cluster | |||
}} | |||
Revision as of 11:00, 5 September 2012
| Symbol: | {{{Symbol}}} |
|---|---|
| Description: | {{{description}}} |
| Synonyms: | |
| Species: | |
| External refs: | EntrezGene:{{{GeneID}}} |
| Associated motifs: | |
| TSS regions: |
View on UCSC genome browser OSC local mirror
Mouse over to see Genome browser image, Click image to go to Genome browser
{{#ucsc_link:{{#entre_id_pos:{{{GeneID}}}}}|https://fantom5-collaboration.gsc.riken.jp/ucsc/}}
TSS expression
Details
| GeneID: | {{{GeneID}}} |
|---|---|
| LocusTag: | {{{LocusTag}}} |
| chromosome: | {{{chromosome}}} |
| map location: | |
| type of gene: | {{{type_of_gene}}} |
| Symbol from nomenclature authority: | {{{Symbol_from_nomenclature_authority}}} |
| Full name from nomenclature authority: | {{{Full_name_from_nomenclature_authority}}} |
| Nomenclature status: | {{{Nomenclature_status}}} |
| Other designations: | |
| Modification date: | {{{Modification_date}}} |
| transcription factor: | {{{transcription_factor}}} |
ENCODE TF ChIP-seq peak enrichment analysis
Method: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br>Analyst: Erick Arner
No analysis results for this cluster
