Template:EntrezGene: Difference between revisions
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<h2>View on UCSC genome browser OSC local mirror</h2> | <h2>View on UCSC genome browser OSC local mirror</h2> | ||
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{{#ucsc_link:{{#entre_id_pos:{{{GeneID}}}}}|https://fantom5-collaboration.gsc.riken.jp/ucsc/}} | {{#ucsc_link:{{#entre_id_pos:{{{GeneID}}}}}|https://fantom5-collaboration.gsc.riken.jp/ucsc/}} | ||
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== TSS expression == | == TSS expression == | ||
{{#ifexpr: {{#ask:[[Category:FFCP]][[EntrezGene::{{{GeneID}}}]]|format=count}} > 0 | | {{#ifexpr: {{#ask:[[Category:FFCP]][[EntrezGene::{{{GeneID}}}]]|format=count}} > 0 | | ||
Revision as of 13:54, 25 October 2012
| Symbol: | {{{Symbol}}} |
|---|---|
| Description: | {{{description}}} |
| Synonyms: | |
| Species: | |
| External refs: | EntrezGene:{{{GeneID}}} |
| Associated motifs: | |
| TSS regions: |
TSS expression
Details
| GeneID: | {{{GeneID}}} |
|---|---|
| LocusTag: | {{{LocusTag}}} |
| chromosome: | {{{chromosome}}} |
| map location: | |
| type of gene: | {{{type_of_gene}}} |
| Symbol from nomenclature authority: | {{{Symbol_from_nomenclature_authority}}} |
| Full name from nomenclature authority: | {{{Full_name_from_nomenclature_authority}}} |
| Nomenclature status: | {{{Nomenclature_status}}} |
| Other designations: | |
| Modification date: | {{{Modification_date}}} |
| transcription factor: | {{{transcription_factor}}} |
ENCODE TF ChIP-seq peak enrichment analysis
Method: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br>Analyst: Erick Arner No analysis results for this cluster
